BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471392 Length=1805 Score E Sequences producing significant alignments: (Bits) Value AT1G12420.1 | Symbols: ACR8 | ACT domain repeat 8 | chr1:422636... 2723 0.0 > AT1G12420.1 | Symbols: ACR8 | ACT domain repeat 8 | chr1:4226362-4229138 REVERSE LENGTH=1858 Length=1858 Score = 2723 bits (1474), Expect = 0.0 Identities = 1731/1847 (94%), Gaps = 50/1847 (3%) Strand=Plus/Plus Query 1 TGGAAGGATTATGTGAAAGCGTGCTTTGTCTATCA-TCT----agagagagagagag--a 53 ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | Sbjct 1 TGGAAGGATTATGTGAAAGCGTGCTTTGTCTATCATTCTAGAGAGAGAGAGAGAGAGAAA 60 Query 54 AAAAGTAACAGTTTTTCGGAGCAATAAAAACGGCACCGTTCATTTAGAGAGAAACGCTGG 113 |||||||||||||| || || ||||||||||||||||||||||||||| ||||||||||| Sbjct 61 AAAAGTAACAGTTTCTCAGACCAATAAAAACGGCACCGTTCATTTAGACAGAAACGCTGG 120 Query 114 TG-A-ATAGATTTT--A---G---A---TG-T-G------TT---AGAAGACGAAGAAGA 149 || | | ||||||| | | | || | | || |||||| |||||||| Sbjct 121 TGAAGAGAGATTTTAGATGTGTTAATTTTGCTGGAATTCTTTAGAAGAAGAAGAAGAAGA 180 Query 150 ACCAGAGGTTGAAAACGACGGCGTATTAGTTTGTATTAGAGATGGCGATGAAGGGTTATT 209 | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 181 AACAGAGGTTGAAAACGACGGCGTATTAGTTTGTATCAGAGATGGCGATGAAGGGTTATT 240 Query 210 TGGATGAGTATGAAAAGCTTGTTATTAGGATGAACACTCCGAGGGTCGTTATCGACAATG 269 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 241 TGGATGAGTATGAAAAGCTTGTTATTAGGATGAACACTCCAAGGGTCGTTATCGACAATG 300 Query 270 GTGTTTGTTCTTCAGCGACAATCGTCAAGGTTGATAGTTCAAGAAGAAATGGGATACTGT 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 301 GTGTTTGTTCTTCAGCGACAATCGTCAAGGTTGATAGTTCAAGAAGAAATGGGATATTGT 360 Query 330 TAGAAGCTGTACAAATTCTCACAGATTTGAATCTCTCCATTAAAAAAGCTTACATTTCTT 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TAGAAGCTGTACAAATTCTCACAGATTTGAATCTCTCCATTAAAAAAGCTTACATTTCTT 420 Query 390 CTGATGGAAGATGGAACATGGATGTTTTTCATGTGACTGACTTAAACGGAAACAAATTGA 449 ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 421 CTGATGGAACATGGAACATGGATGTTTTTCATGTCACTGACTTAAACGGAAACAAATTGA 480 Query 450 ATGACCAGAGCGTCTTGAGATACATTGAACAGTCGATTGAGACGGTTTACTATGGAGAAA 509 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 481 ATGACCAGAGCGTCTTGAGATACATTGAACAGTCGATCGAGACGGTTTACTATGGAGAAA 540 Query 510 ACATTGAAGTAAACTGTTTAACAGCTTTAGAGTTAACCGGAACAGACCGAATCGGTTTAC 569 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 541 ACATTGAAGTAAACGGTTTAACAGCTTTGGAGTTAACCGGAACAGACCGAATCGGTTTAC 600 Query 570 TGTCTGAGATGTTTGCGGTTCTCTCTGATCTCAACTGTGATGTGGTTGACGCTAAGCTAT 629 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 TATCTGAGATGTTTGCGGTTCTCTCTGATCTCAACTGTGATGTGGTTGACGCTAAGCTAT 660 Query 630 GGACACATAATGGTAGAGTTGCTTCTGTGATCTATCTCAGAGATGGTAGCTCTGGAGCTC 689 |||||||||| |||||||||||||||||||||||||||| |||| ||| ||| ||||||| Sbjct 661 GGACACATAACGGTAGAGTTGCTTCTGTGATCTATCTCAAAGATTGTATCTCAGGAGCTC 720 Query 690 CGATTCTTGATTCTCAACGGATATCAAAGATCGAGGGACGGTTAAAGAACGTTTTGAATG 749 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 721 CGATTCTCGATTCTCACCGGATATCAAAGATCGAAGGACGGTTAAAGAACGTTTTGAATG 780 Query 750 GTGATAACGATGTTAACTCTGCTGCAAAGACTTGTGTTTCTGTGGATTCGATGATGCACA 809 | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 781 GCGATAACGATGTTAACTCTGCTGCAAAGACTTGTGTTACTGTGGATTCGATGATGCATA 840 Query 810 TAGAACGTAGACTTCATCAGCTAATGTTTGAAGATAGAGACTATGAGAGGAGATCCAATA 869 | |||||||||||||||||||| |||||||||||||||||||| ||||||||||| || | Sbjct 841 TCGAACGTAGACTTCATCAGCTTATGTTTGAAGATAGAGACTACGAGAGGAGATCTAAGA 900 Query 870 AACAGGAGAGATCTCCAACGGTGGTTGTGACGGTTCAGAATTGGGCTGAGAGGAGTTACT 929 |||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| Sbjct 901 AACATGAGAGATCTCCAATGGTGGTTGTGACGGTTCAGAATTGGGCTGAGAGGGGTTACT 960 Query 930 CTGTCGTTAATGTTCATTGTCGGGACCGGACCAAGCTTCTATTCGATGTGGTTTGTACGT 989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 CTGTCGTTAATGTTCATTGTCGGGACCGGACCAAGCTTCTATTCGATGTGGTTTGTACGT 1020 Query 990 TAACCGATATGGAATATGCCGTGTTCCACGCTACTATCAACACGGCTGAAGACCAAGCTC 1049 ||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||| Sbjct 1021 TAACCGATATGGAATATGCTGTGTTTCATGCTACTATCAACACAGCTGAAGACCAAGCTC 1080 Query 1050 ACTTGGAATTCTATATCCGGCATAAAGATGGATCACCGATAAGTTCGGAGGCAGAGAGGC 1109 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 1081 ACTTGGAATTCTATATCCGGCATAAGGATGGATCACCGATAAGTTCGGAAGCAGAGAGGC 1140 Query 1110 AACGAGTGATTTTATGCTTAGAAGCTGCAGTCGAAAGAAGAGCACTAGAGGGAGTGAGAT 1169 ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 1141 AACGAGTGATTCAATGCTTAGAGGCTGCAGTTGAAAGAAGAGCACTAGAGGGAGTGAGAT 1200 Query 1170 TAGAGCTGAGGCATCCGGACAAACAAGGCTTACTAGCTGAAGTAACTCGGACATTCAGAG 1229 |||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 1201 TAGAGCTGAGGCATCCGGACAAACAAGGTTTACTAGCGGAAGTAACGCGGACATTCAGAG 1260 Query 1230 AAAACGGTCTGAATGTTACAAGAACAGAGATATCAACGAGTAGCGAGATGGCTACAAACA 1289 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1261 AAAACGGTCTGAATGTTACAAGAACAGAGATATCAACGAGTAGCGACATGGCTACAAACA 1320 Query 1290 TATTCTATGTAACTGATGCAAATGGAGACGAACCAGACTTCAAATTGATTGAATCGGTTA 1349 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1321 TATTCTATGTAACTGATGCAAATGGAGACGAACCGGACTTCAAATTGATTGAATCGGTTA 1380 Query 1350 GGGAGAAAATCGGTTTGGAGTGTTTAAGAGTGAAGGAAATGCCAACAATGAATCATAAGA 1409 ||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| Sbjct 1381 GGGAGAAAATCGGTTTGGAGTGTTTGAGAGTGAAGGAGATGCCAACAATGTATCATAAGA 1440 Query 1410 AGGGAGATGGAGAAGAACAACAG-A--CCAAAGCAGTGTTGGTTTCACTTGGGAGTTTGG 1466 |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||| Sbjct 1441 AGGGAGATGGAGAAGAACAACAACAAACCAAAGCAGTGTTGGTTTCACTTGGAAGTTTGG 1500 Query 1467 TTTGGAGAAATCTATTCAACTTTGGTCTTATCAAATCATGTTCTTAAATCATTCAAATCT 1526 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1501 TTTGGAGAAATCTATTCAACTTTGGTCTTATCAAATCATGTTCTTAAATCTTTCAAATCT 1560 Query 1527 TTGGTTAACCGAACCAC-G-----ATGAAATTCATCCTTTGAGAGGCACGCGGACTTTGT 1580 | |||| |||||||||| | |||||||||||||||||||||||||||||| ||||| Sbjct 1561 TGGGTTGACCGAACCACCGGTTCGATGAAATTCATCCTTTGAGAGGCACGCGGATTTTGT 1620 Query 1581 TTAAGAAGTCTGCGTGCCTTAGAAAGGATAAACTTTTTTAT-CGGTGTGGTTGG-TAGGT 1638 ||||||||||||| |||||| |||||||||||| |||| || || ||||||| | ||||| Sbjct 1621 TTAAGAAGTCTGCTTGCCTTGGAAAGGATAAACCTTTTGATTCG-TGTGGTTTGATAGGT 1679 Query 1639 TAAATTTTAAGTTAGGTGATGGTTTGGTCATGTCATGTTATTGTAAATAGAGAAAAAGAG 1698 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1680 TAAATTTTAAGTTAGGTGATGGTTTGGTCATGTCATGTTATTGTAAATATAGAAAAAGAG 1739 Query 1699 GAGAGGGATGATTAGAAATTCAGAAATTGCTTACttttttttctttttttATTGTGGGGT 1758 |||||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 1740 GAGAGGGATGATTAGAAATTCAGAAATTGCTTACTTTTTTTT-T------ATTGTGGGGT 1792 Query 1759 TTTAGATGATAGAAGAGGTTGTACAAAAGTTTCTAAGATTAATTATT 1805 ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1793 TTTAGATGAAAGAAGAGGTTGTACAAAAGTTTCTAAGATTAATTATT 1839 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 89306769555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5