BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471402 Length=989 Score E Sequences producing significant alignments: (Bits) Value AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 |... 1478 0.0 > AT1G12520.1 | Symbols: ATCCS, CCS | copper chaperone for SOD1 | chr1:4267106-4268926 REVERSE LENGTH=1160 Length=1160 Score = 1478 bits (800), Expect = 0.0 Identities = 933/997 (94%), Gaps = 10/997 (1%) Strand=Plus/Plus Query 1 GCCGCAAAAGTTGAAGAAGCAAGAAAATGGCATCAATTCTCAGGTCAGTGGCAACGACTT 60 ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GCCGCAAAAACTGAAGAAGCAAGATAATGGCATCAATTCTCAGGTCAGTGGCAACGACTT 60 Query 61 CAGCCGTCGTAGCCGCTGCGTCTGCGATTCCCATCGCAATCG----C-cttc-tcttctt 114 |||||||||||||||| || ||||||||||||||||| |||| | |||| ||||||| Sbjct 61 CAGCCGTCGTAGCCGCCGCCTCTGCGATTCCCATCGCGATCGCCTTCTCTTCTTCTTCTT 120 Query 115 cttcttcctctaccaaccccaaatctcaatatctcaatttctctttcctctcCCGATCAT 174 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | Sbjct 121 CTTCTTCCTCTACCAACCCCAAATCTCAATCTCTCAATTTCTCCTTCCTCTCCCGATCGT 180 Query 175 CTCCACGTCGCTTGGGACTTACACGAAGCTTCGCTAGCTCTCCGATGACGACCGTTCTCA 234 ||||||||| |||||||||| |||||||||||| ||||||||||||| |||| | ||||| Sbjct 181 CTCCACGTCTCTTGGGACTTTCACGAAGCTTCGTTAGCTCTCCGATGGCGACTGCTCTCA 240 Query 235 CTTCTGATCGTAATCTCCCTCAGGAGGATCGTGTCATACCTCAGCTCCTTACTGAGTTTA 294 |||||||||||||||||| |||||||||||| | ||| |||||||| ||||||||||||| Sbjct 241 CTTCTGATCGTAATCTCCATCAGGAGGATCGAGCCATGCCTCAGCTTCTTACTGAGTTTA 300 Query 295 TGGTTGATATGAAATGTGAGGGTTGTGTTAATGCCGTGAAGAACAAATTAGAAACCATTG 354 |||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 301 TGGTGGATATGACATGTGAGGGTTGTGTTAATGCTGTGAAGAACAAATTAGAAACCATTG 360 Query 355 AAGGGATTGA-AAACGTGGAGGTGGATTTGTCCAACCAAGTTGTGAGGATACTTGGATCT 413 |||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 361 AAGGTATTGAGAAA-GTGGAGGTGGATTTGTCCAATCAAGTTGTGAGGATACTTGGATCT 419 Query 414 TCCCCTGTTAAGGCTATGACCCAAGCTTTGGAGCAAACCGGTCGAAAAGCTCGATTAATT 473 |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| Sbjct 420 TCCCCTGTTAAGGCTATGACTCAAGCTTTGGAGCAAACTGGTCGAAAAGCTCGCTTAATT 479 Query 474 GGACAAGGTGTTCCTCAAGATTTCTTAGTCTCAGCTGCAGTAGCGGAATTCAAAGGCCCT 533 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 480 GGACAAGGTGTTCCTCAAGATTTCTTAGTCTCAGCTGCAGTAGCAGAATTCAAAGGCCCT 539 Query 534 GACATATTCGGGGTGGTCAGATTTGCTCAGGTCAGTATGGAACTTGCAAGAATCGAAGCC 593 ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 540 GACATTTTCGGGGTAGTCCGATTTGCTCAGGTCAGTATGGAACTTGCAAGAATCGAAGCC 599 Query 594 AACTTCACCGGTTTGTCACCCGGAATCCACAGCTGGTGTATTAACGAGTATGGAGATCTC 653 ||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 600 AACTTTACCGGTTTGTCACCCGGAACCCACAGCTGGTGTATCAACGAGTATGGAGATCTC 659 Query 654 ACAAACGGAGCAGCCAGCACAGGGAACTTGTACAATCCATTGCAAGAT-AATACCAACAC 712 ||||||||||||||||||||||||| ||||||||||||||| |||||| || || ||| Sbjct 660 ACAAACGGAGCAGCCAGCACAGGGAGCTTGTACAATCCATTTCAAGATCAA-ACTGGCAC 718 Query 713 AGAGCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTTATAC 772 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 719 AGAGCCATTGGGAGACCTGGGAACACTAGAGGCAGACAAAAACGGAGAGGCCTTTTATTC 778 Query 773 GGGAAAGAAAGAGAAACTCAAGGTTGCGGATCTTATCGGGCGAGCCGTTGTGGTGTACAA 832 ||||||||||||||||||||||||||| || ||||||||| ||||||| ||||||||||| Sbjct 779 GGGAAAGAAAGAGAAACTCAAGGTTGCAGACCTTATCGGGAGAGCCGTCGTGGTGTACAA 838 Query 833 GACCGAGGATAATAAGTCAGGCCCCGGATTGACCGCTGCTGTGATAGCTAGAAGCGCAGG 892 |||||| ||||||||||||||||||||||||||||| || ||||| |||||||||||||| Sbjct 839 GACCGATGATAATAAGTCAGGCCCCGGATTGACCGCCGCAGTGATTGCTAGAAGCGCAGG 898 Query 893 AGTTGGAGAAAACTACAAAAAGCTTTGTTCTTGTGATGGTACTGTCATATGGGAAGCAAC 952 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 899 GGTTGGAGAAAACTACAAAAAACTTTGTTCTTGTGATGGTACTGTCATATGGGAAGCTAC 958 Query 953 AAACAGCGATTTCGTGACCAGTAAGGTATAATAACAA 989 |||||||||||||||| |||||||||| ||||||||| Sbjct 959 AAACAGCGATTTCGTGGCCAGTAAGGTTTAATAACAA 995 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48425717708 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5