BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471407 Length=1933 Score E Sequences producing significant alignments: (Bits) Value AT1G12580.1 | Symbols: PEPKR1 | phosphoenolpyruvate carboxylase... 2833 0.0 > AT1G12580.1 | Symbols: PEPKR1 | phosphoenolpyruvate carboxylase-related kinase 1 | chr1:4282899-4285829 FORWARD LENGTH=1972 Length=1972 Score = 2833 bits (1534), Expect = 0.0 Identities = 1834/1973 (93%), Gaps = 44/1973 (2%) Strand=Plus/Plus Query 1 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTGTTTTGCTCTTCGACGGG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4 AGAGGACTGGGTCTGGTCTCTTCGCTGCAACCTATAGCTGTTG-TTTGCTCTTCGACGGG 62 Query 61 ATTCTCACTACTCTTTTGCaaaaaaaaaaaGATCGGAGGTTCCGAAGGTGAATGCAGCTT 120 ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 63 ATTCTCACTACTCTTTTGCCAAAAAAAAGAGATCGGAGGTTCCGAAGGTGAATGCAGCTT 122 Query 121 GCGATTTCATCGAAGAGAAGATTCACCTGCCGGATTAGGCTTAATTGGGTATTATAACTG 180 |||||||||| ||| ||||||||| ||| |||||||||||| ||| |||| ||| || Sbjct 123 GCGATTTCATAGAAAAGAAGATTCGTTTGCTGGATTAGGCTTATTTGTGTATCATAGCTT 182 Query 181 TAAGATTGTACCTGAGA--T-TT-AT--T-G--C-TAGG---T-GA-A--CGT------T 217 | || || || |||||| | || || | | | |||| | || | || | Sbjct 183 TGAGGTTTTAACTGAGATTTATTGATAGTGGAACTTAGGTTTTCGAGAGGTGTGAACAGT 242 Query 218 TGGGTATATGGGTATGGACATAGCTGATAAAGAGAATACGAGCCCGCTTTTATTTGAATT 277 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 243 TGGGTATATGGGTATGGACATAGCTGATAAGGAGAATACGAGCCCGCTTTTATTTGAATT 302 Query 278 CTGCAATTGTTATAAAGTTGCTAGCCTTACTGAAACCATTCTAAACCCGGTAAATGTTTC 337 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 303 CTGCAATTGCTATAAAGTTGCAAGCCTTACTGAAACCATTCTAAACCCTGTAAATGTTTC 362 Query 338 CAACTTAAAAGATCGATATGTGCTTGGAGAACAGTTAGGTTGGGGTCAGTTTGGTGTGAT 397 ||||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||| Sbjct 363 CAACTTAAAAGATAGATATGTACTTGGAGAACAGTTAGGCTGGGGTCAGTTTGGTGTGAT 422 Query 398 AAGAGTATGTTCTGATAAGTTAACAGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 457 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 423 AAGAGTATGTTCTGATAAGTTAACTGGAGAGAGGCTTGCTTGTAAGTCTATATCTAAAGA 482 Query 458 CAGATTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATTATGGCCAA 517 |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 483 CAGACTGGTAACACAAGATGACATGAAGAGTATCAAACTCGAGATTGCGATAATGGCCAA 542 Query 518 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTATGAGGAGAAAGATTATGT 577 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 543 GTTAGCTGGGCACCCAAATGTGGTGAATCTCAAAGCAGTTTACGAGGAGAAAGATTCTGT 602 Query 578 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTTGAGAAATATGG 637 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 603 GCATCTTGTGATGGAACTATGCGCAGGCGGTGAGCTTTTTCACAAGCTCGAGAAATATGG 662 Query 638 AAGGTATTCAGAGTTTCGTGCTAGGGTACTCTTCAAGCATTTGATGCAAGTGGTCAAGTT 697 ||||||||| ||| ||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 663 AAGGTATTCTGAGGTTCGTGCTAGGGTGCTCTTCAAGCACTTGATGCAAGTGGTCAAGTT 722 Query 698 TTGTCACGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 757 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 TTGTCATGATAGCGGTATTGTTCACAGAGATTTGAAACCGGAAAACATTCTTATGGCCAC 782 Query 758 AATGTCTTCTTCATCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 817 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 AATGTCTTCTTCGTCTCCTATCAAATTGGCTGATTTTGGACTGGCAACCTATATAAAGCC 842 Query 818 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCTGAAGTGTTATC 877 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 843 TGGCGAAAAGCTGAGCGGAACAGTTGGTAGTCCGTTTTATATAGCCCCGGAAGTGTTAGC 902 Query 878 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTACATTCTTCT 937 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 903 AGGGGGATATAACCAAGCTGCTGATGTATGGAGTGCAGGGGTTATTTTGTATATTCTTCT 962 Query 938 CAGTGGAGTGCCTCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 997 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 963 CAGTGGAGCGCCGCCCTTTTGGGGAAAGACTAAGTCAAAGATTTTTGATGCTGTCAGGGC 1022 Query 998 TGCAGATTTGAGATTTTCTGCAGAGCCATGGGACCATATAACTTCATATGCTAAGGATTT 1057 ||| |||||||||||||||||||||||||||||| ||||||||||||| || |||||||| Sbjct 1023 TGCCGATTTGAGATTTTCTGCAGAGCCATGGGACAATATAACTTCATACGCCAAGGATTT 1082 Query 1058 GATCCGCGGGATGCTTTGTGTTGATCCTTCCCAAAGATTATCAGCTGATGAAGTTCTGGC 1117 ||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || Sbjct 1083 GATTCGCGGGATGCTTTGTGTGGATCCTTCCCAAAGGTTATCAGCTGACGAAGTTCTAGC 1142 Query 1118 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1177 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 TCACTCTTGGATGGAGCAGTTATCTGAATCAGGTCAAGAACAATATGATCAGGATGGGTT 1202 Query 1178 TGGTTGTGAAGGATTGGATAATGGGGGTTGTTCTTTTTCCACCCAATGCATTTCTCGCGA 1237 |||||||||||||||||| |||||||| |||||||| ||||| |||||| ||||||| || Sbjct 1203 TGGTTGTGAAGGATTGGAGAATGGGGGATGTTCTTTCTCCACACAATGCGTTTCTCGGGA 1262 Query 1238 ACAAGACTATAGCTTTAGTGTTGGTCAGTTAGAGCAATCAACAGATAACGAGTGTAAATC 1297 |||||||||||||||||| ||||| |||||||||||||||||||||||||| | |||||| Sbjct 1263 ACAAGACTATAGCTTTAGCGTTGGCCAGTTAGAGCAATCAACAGATAACGATTTTAAATC 1322 Query 1298 ATCGTTCTCGTCTTTCCTACCTGTGGATGATACACTGCCAAATTCCGGTTTTGGTGGGTT 1357 |||||||||| | |||||||||| |||| | |||||||||||||||||||||| |||||| Sbjct 1323 ATCGTTCTCGACATTCCTACCTGCGGATAACACACTGCCAAATTCCGGTTTTGATGGGTT 1382 Query 1358 TTCTTTTGATGGAAAACAACCGGAATCAACCTCAGCTTGCTTCACATCAACTGGAATTCC 1417 |||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct 1383 TTCTTTTGATGGGAAACAACCGGAATCAACCACAGCTGGCTTCTCATCAACTGGAATTCC 1442 Query 1418 CTCTATGCCAAGCTTTACCTTTTTTAGTCCAATCCCAGCGACGACACAGAACAACAACAT 1477 ||||||||||||||||||||||||| || ||| |||||| | ||||||||||||| |||| Sbjct 1443 CTCTATGCCAAGCTTTACCTTTTTTTGTACAAGCCCAGCAAGGACACAGAACAACGACAT 1502 Query 1478 AAGC-GAAACAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1536 || | |||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1503 AA-CTGAAATAGATGGAAAAGTTCGAGACTCAAGCCCAAAGAGGTTACTGCCTTCACCAG 1561 Query 1537 ATTCTTCTTCACAACTTGAGAGACGCGAGGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1596 |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||| Sbjct 1562 ATTCTTCTTCACAACTTGAGAGGCGTGATGAAGCAGGGGAGAATCAGACAGAAGCAGGAG 1621 Query 1597 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTCCACAGCA 1656 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1622 GAAAGTCAGAGACAAGAAGGGAAAGAGGAAACTGGTCAAGAATGTCAGGTCTACACAGCA 1681 Query 1657 AAAGAAACCGGACCATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1716 |||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1682 AAAGGAACAGAACAATAGGACTAGGCGAGCTAGACCAGTTGGTGGTGGATGTTGCAGTCA 1741 Query 1717 CAGCGTCGATAATCAGATGGGCATCTTGCACCCATATTCCCACGGCTCCATCCCTCAGAT 1776 ||| ||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||| Sbjct 1742 CAGAGTCGATAATCAGATGGGCATCTTGCACGCATATTCCCACCGCTCCATCTCTCAGAT 1801 Query 1777 TGTCGCTCGTCTGCTAGAA-A-GA---C-AA-----C---TGTTATCAGTATAATATA-T 1821 ||||||||||||||||||| | || | || | ||||||||||| ||||| | Sbjct 1802 TGTCGCTCGTCTGCTAGAAGAAGAAAACGAAGAAGACAACTGTTATCAGTAAAATATTGT 1861 Query 1822 -TGTACACATCTGATTTTGTTCGTGCAATGTCTTTGTTTTTGTAGTAAAACATTTCCATG 1880 ||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||| Sbjct 1862 ATGTACACATCTGATTTTGTCCCTGCAATGTCTTTGTTTTTGTAGTAAAACTTTTCCATG 1921 Query 1881 GAAACTGACCTCAACCTGTATAAACCAAGCGGAAATAGAGTGTGATTTTGATC 1933 ||||||||||||||| |||||||||||| |||||||||||||||||||||||| Sbjct 1922 GAAACTGACCTCAAC-TGTATAAACCAA-CGGAAATAGAGTGTGATTTTGATC 1972 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95732439315 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5