BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471419
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT1G12680.1 | Symbols: PEPKR2 | phosphoenolpyruvate carboxylase... 3142 0.0
> AT1G12680.1 | Symbols: PEPKR2 | phosphoenolpyruvate carboxylase-related
kinase 2 | chr1:4319886-4322945 REVERSE LENGTH=1933
Length=1933
Score = 3142 bits (1701), Expect = 0.0
Identities = 1859/1934 (96%), Gaps = 16/1934 (1%)
Strand=Plus/Plus
Query 1 TCTATCTGCATGATTTGGGCGTAGCTTTTTCTTCCCCAAATA-T-CGCTTCATCGAGATT 58
|||||||||||||||||||| |||||||||| |||||||||| | |||||||||||||||
Sbjct 10 TCTATCTGCATGATTTGGGCTTAGCTTTTTCGTCCCCAAATATTGCGCTTCATCGAGATT 69
Query 59 GCTAGGGTTTCTCCTCTTCGATCTTCGCTGCGCATCAACATCTATTGGTTCGA-TTTCGT 117
||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||
Sbjct 70 GCTAGGGTTTCTCCTCTTCGATCTTCGCTGCTCATCAACATCTATTGATTCAATTTTCGT 129
Query 118 GCTGTTATTTCCCTCTCTGATTTATTGATCGGAAATTTCGTCTCGATTCGATTCATTAGG 177
||| || |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 130 GCTATTGTTTCCCTCTCTGATTTCTTAATCGGAAATTTCGTCTCGATTCGATTCATTAGG 189
Query 178 TTCCATCACTCTTCTCTGATCGGTGAAAGGAGGAGAAGATCC-GTTATTTTCTTATGTAA 236
||||||||||||| ||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 190 TTCCATCACTCTTTTCTGATCGGTGAAAGGAGGAGAAGA-CCTGTTGTTTTCTTATGTAA 248
Query 237 GTGAGTCTGATATTCGTTATCTGTTGGCTGGTTTGATGAGGAAGAAGCGGAAAGGTAGTG 296
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GTGATTCTGATATTCGTTATCTGTTGGCTGGTTTGATGAGGAAGAAGCGGAAAGGTAGTG 308
Query 297 AAACTGAGGGTTGGGAGAATTTACCAGAGGATTTATTATGTTCAACTGCATCACGATCAT 356
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 309 AAACTGAGGGTTGGGAGAATTTACCAGATGATTTATCATGTTCAACTGCATCACGATCAT 368
Query 357 CCAACTTTAGGTCGCACTTTTCACTAGAGGGTTATGCTAGACTTAAGAAGCGGTGTAAGG 416
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 369 CCAACTTCAGGTCGCACTTTTCACTAGAGGGTTATGCTAGACTTAAGAAACGGTGTAAGG 428
Query 417 AGACTGAAGCTGTCGAGTCTGTTGGTTCCTTTAAGAGACGAATTGCTGGTGTTGCTACTG 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AGACTGAAGCTGTCGAGTCTGTTGGTTCCTTTAAGAGACGAATTGCTGGTGTTGCTACTG 488
Query 477 CACCTCCTTGTGGTGCATCATCTTTGGTTTCATCAGGAAGAGGTTTGAAGAGGAAGATAG 536
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 489 CACCTCCTTGTGGTGCATCATCTTTGGTTTCGTCAGGAAGAGGTTTGAAGAGGAAGATAG 548
Query 537 GGTGCATAGATGTTTCCACGCAGACTGGTAGGAAGAATAAGATAGGCGATGACTATGTTT 596
||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 549 GGTGCATAGATGTTTCCACACAGACTGGTAGGAAGAATAAAATAGACGATGACTATGTTT 608
Query 597 TTGGTCGAAATATTGGGAAAGGGAAATTTGGGTCAGTCAGGATCTGTAAGTCTAGGAAGA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TTGGTCGAAATATTGGGAAAGGGAAATTTGGGTCAGTCAGGATCTGTAAGTCTAGGAAGA 668
Query 657 ATGGGACTGAGTTTGCTTGTAAAACTCTGAAGAAGGGGGAGGAGACTGTTCACCGGGAAG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATGGGACTGAGTTTGCTTGTAAAACTCTGAAGAAGGGGGAGGAGACTGTTCACCGGGAAG 728
Query 717 TTGAGATAATGCAACATTTATCTGGTCATCCTCGGGTTGTCACGTTGCATGCTGTATATG 776
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 729 TTGAGATAATGCAACATTTGTCTGGTCATCCTCGGGTTGTCACATTGCATGCTGTGTATG 788
Query 777 AAGAGTCAGACTCTTTCCATCTTGTGATGGAGCTGTGTTCAGGGGGACGTTTGATTGATC 836
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AAGAGTCAGACTGTTTCCATCTTGTGATGGAGCTGTGTTCAGGGGGACGTTTGATTGATC 848
Query 837 AGATGGTAAAGGTGGGCAGGTATTCTGAGCAGCGAGCAGCTAATATATTCAAGGACCTCA 896
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 849 AGATGGTAAAGGTGGGCAGGTATTCTGAGCAACGAGCAGCTAATATATTCAAGGACCTTA 908
Query 897 TGCTAGTCATCAATTATTGCCACGAGATGGGAGTTGTGCACAGAGACATAAAACCAGAGA 956
||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| ||||
Sbjct 909 TGCTAGTGATCAATTATTGCCATGAGATGGGAGTTGTGCATAGAGATATAAAACCTGAGA 968
Query 957 ATATTCTACTAACAGCTGCTGGGAAGATACAGCTAGCTGATTTTGGCCTCGCCATGAGAA 1016
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 969 ATATTCTCCTAACAGCTGCTGGGAAGATACAGCTGGCTGATTTTGGCCTCGCCATGAGAA 1028
Query 1017 TTGCAAAAGGTCAAACACTGTCAGGATTGGCAGGAAGTCCTGCTTATGTTGCACCTGAAG 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 TTGCAAAAGGTCAAACACTGTCAGGATTGGCAGGAAGTCCTGCTTATGTTGCACCTGAAG 1088
Query 1077 TTCTTTCTGAAAATTATTCAGAGAAGGTCGACATTTGGAGTGCAGGTGTCCTATTATATG 1136
||||||| |||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
Sbjct 1089 TTCTTTCCGAAAATTATTCAGAGAAGGTTGACGTTTGGAGTGCAGGTGTCCTCTTATACG 1148
Query 1137 CTCTCTTGTCTGGTGTACTCCCTTTTAAGGGAGACTCATTGGACGCTATTTTCGAAGCAA 1196
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1149 CTCTCTTGTCTGGTGTACTCCCTTTTAAGGGAGACTCATTGGATGCTATTTTCGAAGCAA 1208
Query 1197 TCAAAAACGTGAAGCTTGATTTCAACTCGGGAGTGTGGGAGTCTGTGTCCAAACCTGCCC 1256
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1209 TCAAAAACGTGAAGCTTGATTTCAACACGGGAGTGTGGGAGTCTGTGTCCAAACCTGCCC 1268
Query 1257 GTGATCTCTTGGCGAGAATGCTAACAAGGGAAGAATCTGCCAGAATCACAGCGGATGAAG 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GTGATCTCTTGGCGAGAATGCTAACAAGGGAAGAATCTGCCAGAATCACAGCGGATGAAG 1328
Query 1317 TGCTAAGGCATCCATGGATACTCTTTTACACAGACCGGACACTCAAGACCATGTGTATCA 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TGCTAAGGCATCCATGGATACTCTTTTACACAGACCGGACACTCAAGACCATGTGTATCA 1388
Query 1377 AGTCGAAGCACAAGAGTCAAGCAGCATCT-CTTCCGTGCCTCCAGAATCGCAGTCCCACA 1435
|||||||||||||||||||||||| |||| || | ||| |||||||||||||||||||||
Sbjct 1389 AGTCGAAGCACAAGAGTCAAGCAGGATCTTCTAC-GTGTCTCCAGAATCGCAGTCCCACA 1447
Query 1436 GAGAAAACTGACCTAAACAGAGCTAACAGAGAAAAGAAGATACCATCTGATTCACCGACT 1495
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1448 GAGAAAACTGACCTAAACAGAGCTGACAGGGAAAAGAAGATACCATCTGATTCACCGACT 1507
Query 1496 GATTCATTCTCCAACACAGAGGAGGAAGAAGATGAGAGCGGTGTGGTCGATGTGCTTGTT 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1508 GATTCATTCTCCAACACAGAGGAGGAAGAAGATGAGAGCGGTGTGGTCGATGTGCTTGTT 1567
Query 1556 GTTGCAATCTCCAACGTGAGGATCTCAGAACCAAAGAGAAGCAGAGTCTGTAGTCCCACC 1615
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 GTTGCAATCGCCAACGTGAGGATCTCAGAACCAAAGAGAAGCAGAGTCTGTAGTCCCACC 1627
Query 1616 AATAACCCCATTGAGCAGCAACACTCTTCTAACTTGACCTCGACTAATACACTCTGTCGA 1675
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1628 AATAACCCCATTGAGCAGCAACACTCTTCTAACTTGACCTCGACTAGTACACTCTGTCGA 1687
Query 1676 GCGTTCTGACAAAACCAGACCACACACGCACATGGGCATTGTCCAAGCCACAAGCTACGG 1735
|| |||||||||||||| | | | ||||| ||||||||||||||||| |||||||| ||
Sbjct 1688 GCTTTCTGACAAAACCA--C-A-A-ACGCAGATGGGCATTGTCCAAGCGACAAGCTATGG 1742
Query 1736 TTTCTCCACGATCTTAGTGACTTTTCTGTCATAATAGTTGGATTTGATATGATTCTGGGC 1795
||||||||||||||||||||| ||||||| ||||||||||| | |||||||||||| |
Sbjct 1743 TTTCTCCACGATCTTAGTGACCTTTCTGTTATAATAGTTGG-T--GATATGATTCTGTGT 1799
Query 1796 TTTTTCCTCTTCTACATCTCTGACTATGACCATGTACAGATCATGTAAATAGAATATGCT 1855
|||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1800 TTTTTCCTCTTCTATATCTCTTACTTTGACCATGTACAGATCATGTAAATAGAATATGCT 1859
Query 1856 AAACAAATGATTGATCCGATTTTGGATCGGAGTTATAAGGTGTTGTTTCTAGCCCCTTCA 1915
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1860 AAACAAATGATTGATCCGATTT-GGATCGGAGTTATAAGGTGTTGTTTCTAGTCCCTTCA 1918
Query 1916 TAAAATTTTGGAAG 1929
||||||||||||||
Sbjct 1919 TAAAATTTTGGAAG 1932
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5