BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471499
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13440.1 | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phospha... 1914 0.0
AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-p... 1312 0.0
> AT1G13440.1 | Symbols: GAPC-2, GAPC2 | glyceraldehyde-3-phosphate
dehydrogenase C2 | chr1:4608196-4610647 REVERSE LENGTH=1439
Length=1439
Score = 1914 bits (1036), Expect = 0.0
Identities = 1152/1206 (96%), Gaps = 16/1206 (1%)
Strand=Plus/Plus
Query 1 TTTCATCATCACGTTCTTCTTCTCTTTTAAATAACCCTAAAGCCT---C--A-CCAAACC 54
||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||
Sbjct 23 TTTCATCATCACGTTCTTCTTCTCTTTTAAATAACCCTAAATCCTCACCAAACCCAAACC 82
Query 55 CTCACTCACTAATTTCACA-T-TCTTCTCTCTCGATATCATCGAAA--TCTCTCGATCTC 110
||||||||||| ||||||| | |||||||||||||||||||| ||| ||||||||||||
Sbjct 83 CTCACTCACTATTTTCACATTCTCTTCTCTCTCGATATCATCTAAATCTCTCTCGATCTC 142
Query 111 AAATTTCG-AAAATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATC 169
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 -AATTTCGCAAAATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATC 201
Query 170 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTCAAC 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 202 GGTCGTTTGGTTGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTTAAC 261
Query 230 GATCCTTTCATCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGT 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GATCCTTTCATCACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGT 321
Query 290 CAGTGGAAGCACCATGAACTTAAGGTCAAGGATGATAAAACTCTTCTCTTCGGTGAGAAG 349
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 322 CAGTGGAAGCACCATGAGCTTAAGGTGAAGGATGACAAAACTCTTCTCTTCGGTGAGAAG 381
Query 350 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGAGATCCCATGGGGTGAGGCTGGAGCT 409
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 382 CCAGTCACTGTTTTCGGCATCAGGAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCT 441
Query 410 GACTTTGTTGTTGAGTCTACTGGTGTCTTCACTGACAAGGACAAGGCAGCTGCTCACTTG 469
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 442 GACTTTGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTG 501
Query 470 AAGGGTGGTGCTAAAAAGGTTGTCATCTCTGCGCCAAGCAAAGATGCTCCCATGTTTGTC 529
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 502 AAGGGTGGTGCTAAAAAGGTTGTCATCTCTGCCCCAAGCAAAGATGCGCCCATGTTCGTT 561
Query 530 GTTGGTGTCAATGAGCATGAATACAAGTCTGATCTTGACATTGTTTCCAATGCTAGTTGC 589
||||||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 562 GTTGGTGTCAACGAGCACGAGTACAAGTCTGACCTTGACATTGTTTCCAACGCTAGTTGC 621
Query 590 ACCACTAACTGCCTTGCTCCTCTTGCCAAGGTTATTAACGACAGATTTGGGATTGTTGAG 649
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 622 ACCACTAACTGCCTTGCTCCTCTTGCCAAGGTTATTAATGACAGGTTTGGCATTGTTGAG 681
Query 650 GGACTCATGACCACTGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCA 709
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 682 GGACTCATGACCACTGTCCACTCTATCACTGCTACTCAGAAGACAGTTGATGGTCCATCA 741
Query 710 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGT 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 742 ATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGT 801
Query 770 GCCGCCAAGGCTGTTGGCAAAGTGTTGCCATCCCTCAATGGAAAATTGACTGGAATGTCT 829
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 802 GCCGCCAAGGCTGTTGGGAAAGTGTTGCCATCCCTCAATGGAAAATTGACCGGAATGTCT 861
Query 830 TTCCGTGTTCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCT 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 TTCCGTGTTCCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCT 921
Query 890 GCAACATACGATGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAACTGAAGGGA 949
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 922 GCAACATACGACGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAAATGAAGGGA 981
Query 950 ATTTTGGGATACACCGAGGATGATGTTGTGTCTACTGACTTTGTCGGTGACAACAGGTCA 1009
|||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 982 ATTTTGGGATACACTGAGGATGATGTTGTGTCTACCGACTTTGTTGGTGACAACAGGTCA 1041
Query 1010 AGCATATTCGATGCTAAGGCAGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCA 1069
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1042 AGCATTTTCGATGCCAAGGCTGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCA 1101
Query 1070 TGGTACGACAACGAGTGGGGTTACAGTTCTCGTGTCGTCGACCTTATCGTTCACATGTCA 1129
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1102 TGGTACGACAACGAATGGGGTTACAGTTCTCGTGTCGTTGACCTTATCGTTCACATGTCA 1161
Query 1130 AAGGCCTAAGTTTACACCAGCAAGAGTTTGTGTGT--T-GAGT-CGTACTGTTCTGAATa 1185
|||||||||| ||||||| || ||||||||||||| | |||| ||||||||||||||||
Sbjct 1162 AAGGCCTAAGCTTACACCGGCGAGAGTTTGTGTGTGGTTGAGTTCGTACTGTTCTGAATA 1221
Query 1186 aaaaaa 1191
||||||
Sbjct 1222 AAAAAA 1227
Score = 198 bits (107), Expect = 1e-49
Identities = 156/177 (88%), Gaps = 13/177 (7%)
Strand=Plus/Plus
Query 1192 TTTCACTGATTCCATGCGCAGTCATGAGAGTTTGTAGCttttttttctttttGCTTTCTA 1251
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1259 TTTCACTGATTCCATGCGCAGTCATGAGAGTTTGTAGCTTTTGT--CTTTTTGCTTTCTC 1316
Query 1252 TTAATGTTTCCCTGCTTTGAA--AGTTGAAACCATTGGTTTGGTTTTT-ATGTTAATGA- 1307
|||||||||||||||||| | | | ||||||||||||||||||||| |||||||| |
Sbjct 1317 TTAATGTTTCCCTGCTTT-ATTTACT-GAAACCATTGGTTTGGTTTTTTATGTTAATTAA 1374
Query 1308 GTTT--AGTTCATTGA-TTT-TCGTGGTAACTCAAATCCAACTGGCAACTGCAACAT 1360
|||| |||||||| | ||| ||||| ||||||||| |||||||||||||| |||||
Sbjct 1375 GTTTTTAGTTCATT-ACTTTCTCGTGCTAACTCAAACCCAACTGGCAACTGGAACAT 1430
> AT3G04120.1 | Symbols: GAPC, GAPC-1, GAPC1 | glyceraldehyde-3-phosphate
dehydrogenase C subunit 1 | chr3:1080950-1083530
FORWARD LENGTH=1543
Length=1543
Score = 1312 bits (710), Expect = 0.0
Identities = 920/1023 (90%), Gaps = 8/1023 (1%)
Strand=Plus/Plus
Query 121 AATGGCTGACAAGAAGATCAGAATCGGAATCAACGGTTTCGGAAGAATCGGTCGTTTGGT 180
|||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||
Sbjct 127 AATGGCTGACAAGAAGATTAGGATCGGAATCAACGGATTCGGAAGAATTGGTCGTTTGGT 186
Query 181 TGCTAGAGTTGTTCTTCAGAGGGATGATGTTGAGCTCGTCGCTGTCAACGATCCTTTCAT 240
||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 187 TGCTAGAGTTGTTCTCCAGAGGGACGATGTTGAGCTCGTCGCTGTCAACGACCCCTTCAT 246
Query 241 CACCACCGAGTACATGACATACATGTTTAAGTATGACAGTGTTCACGGTCAGTGGAAGCA 300
||| || ||||||||||| |||||||| ||||| ||||||||||||||||| ||||| ||
Sbjct 247 CACTACTGAGTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCAATGGAAACA 306
Query 301 CCATGAACTTAAGGTCAAGGATGATAAAACTCTTCTCTTCGGTGAGAAGCCAGTCACTGT 360
| ||||||| ||| |||||||||| || || |||||||||||||||||||||||||||||
Sbjct 307 CAATGAACTCAAGATCAAGGATGAGAAGACCCTTCTCTTCGGTGAGAAGCCAGTCACTGT 366
Query 361 TTTCGGCATCAGGAACCCTGAGGAGATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTGT 420
|||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 367 TTTCGGCATCAGGAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTACGTTGT 426
Query 421 TGAGTCTACTGGTGTCTTCACTGACAAGGACAAGGCAGCTGCTCACTTGAAGGGTGGTGC 480
||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct 427 TGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTGAAGGGTGGTGC 486
Query 481 TAAAAAGGTTGTCATCTCTGCGCCAAGCAAAGATGCTCCCATGTTTGTCGTTGGTGTCAA 540
|| |||||||| |||||||| || |||||||| ||||| |||||||| |||||||||||
Sbjct 487 CAAGAAGGTTGTTATCTCTGCCCCCAGCAAAGACGCTCCAATGTTTGTTGTTGGTGTCAA 546
Query 541 TGAGCATGAATACAAGTCTGATCTTGACATTGTTTCCAATGCTAGTTGCACCACTAACTG 600
||||| ||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||
Sbjct 547 CGAGCACGAATACAAGTCCGACCTTGACATTGTCTCCAACGCTAGCTGCACCACTAACTG 606
Query 601 CCTTGCTCCTCTTGCCAAGGTTATTAACGACAGATTTGGGATTGTTGAGGGACTCATGAC 660
||||||||| |||||||||||||| || ||||||||||| ||||||||||| || |||||
Sbjct 607 CCTTGCTCCCCTTGCCAAGGTTATCAATGACAGATTTGGAATTGTTGAGGGTCTTATGAC 666
Query 661 CACTGTCCACTCTATCACTGCTACTCAGAAGACTGTTGATGGTCCATCAATGAAGGACTG 720
|| |||||||| ||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 667 TACAGTCCACTCAATCACTGCTACTCAGAAGACTGTTGATGGGCCTTCAATGAAGGACTG 726
Query 721 GAGAGGTGGAAGAGCTGCTTCCTTCAACATTATTCCTAGCAGCACTGGTGCCGCCAAGGC 780
||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||
Sbjct 727 GAGAGGTGGAAGAGCTGCTTCATTCAACATTATTCCCAGCAGCACTGGAGCTGCCAAGGC 786
Query 781 TGTTGGCAAAG-TG-TTGCCATCCCTCAATGGAAAATTGACTGGAATGTCTTTCCGTGTT 838
||| || |||| || || ||| | || || ||||| |||||||||||||||||||||||
Sbjct 787 TGTCGG-AAAGGTGCTT-CCAGCTCTTAACGGAAAGTTGACTGGAATGTCTTTCCGTGTC 844
Query 839 CCAACCGTTGATGTCTCAGTTGTTGATCTCACCGTTAGACTTGAGAAAGCTGCAACATAC 898
|||||||||||||||||||||||||| || || || ||||| ||||||||||| || |||
Sbjct 845 CCAACCGTTGATGTCTCAGTTGTTGACCTTACTGTCAGACTCGAGAAAGCTGCTACCTAC 904
Query 899 GATGAAATCAAGAAGGCCATCAAGGAGGAATCTGAAGGCAAACTGAAGGGAATT-TTGGG 957
||||||||||| ||||| |||||||||||||| ||||||||||| |||||||| ||||
Sbjct 905 GATGAAATCAAAAAGGCTATCAAGGAGGAATCCGAAGGCAAACTCAAGGGAATCCTTGG- 963
Query 958 ATACACCGAGGATGATGTTGTGTCTACTGACTTTGTCGGTGACAACAGGTCAAGCATATT 1017
||||||||||||||||||||| || |||||||| || || ||||||||||| ||||| ||
Sbjct 964 ATACACCGAGGATGATGTTGTCTCAACTGACTTCGTTGGCGACAACAGGTCGAGCATTTT 1023
Query 1018 CGATGCTAAGGCAGGGATTGCATTGAGCGACAAGTTTGTGAAGTTGGTGTCATGGTACGA 1077
|| || ||||| || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1024 TGACGCCAAGGCTGGAATTGCATTGAGCGACAAGTTTGTGAAATTGGTGTCATGGTACGA 1083
Query 1078 CAACGAGTGGGGTTACAGTTCTCGTGTCGTCGACCTT-ATCGTTCACATGTCAAAGGCCT 1136
|||||| |||||||||||||| ||||| |||||| || ||||| ||||||||||||||||
Sbjct 1084 CAACGAATGGGGTTACAGTTCCCGTGTGGTCGAC-TTGATCGTCCACATGTCAAAGGCCT 1142
Query 1137 AAG 1139
|||
Sbjct 1143 AAG 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5