BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471532 Length=1730 Score E Sequences producing significant alignments: (Bits) Value AT1G13730.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 2209 0.0 > AT1G13730.1 | Symbols: | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr1:4709824-4712550 FORWARD LENGTH=1773 Length=1773 Score = 2209 bits (1196), Expect = 0.0 Identities = 1560/1725 (90%), Gaps = 67/1725 (4%) Strand=Plus/Plus Query 31 CAAAAATCCCAATTTCTTCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCA-T- 88 ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| | Sbjct 89 CAACAATCCCAATTTCTCCTCGTCGGAGATTTCTAAGTAAAACCCTAGAACTAACCATTA 148 Query 89 tatata-ta-aat----atatatTCA----TCCCTC-CCCTGTCTCCTACTTTGtcttct 137 |||||| || ||| ||||||||| |||||| |||||| || |||| |||||||| Sbjct 149 TATATATTATAATACAAATATATTCATCCCTCCCTCTCCCTGTGTCTTACTCTGTCTTCT 208 Query 138 cttcgaactcatctgagattcttgattctgcttctcttcttatcttctcCCTAGGTAGAG 197 ||||||||| |||||||||| ||||||||||||||||||| |||||||||| |||||||| Sbjct 209 CTTCGAACTGATCTGAGATTTTTGATTCTGCTTCTCTTCTCATCTTCTCCCAAGGTAGAG 268 Query 198 ATGGCACTTGAATCAAATGCTCCTGTGGTGGATCCAAACACTATTGGCAATTCGTTTGTT 257 ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| Sbjct 269 ATGGCACTTGAATCAAATGCTCCAGTGGTGGACCCAAACACTATTGGCAATTCTTTTGTT 328 Query 258 GAGCAGTACTACAACCTCTTGTATAAGTCACCAGCTG-TAGTGCATCAGTTTTATCTCGA 316 ||| | ||||||||||||||||||||||||||| | | ||||||||||||||||||||| Sbjct 329 GAGAAATACTACAACCTCTTGTATAAGTCACCATC-GCAAGTGCATCAGTTTTATCTCGA 387 Query 317 CGATAGTGTTTTGGGCCGCCCCGGTGCTGATGGAGAGATGGTTTCCGTCAAATCCTTAAA 376 |||||||||||| ||||| || ||| ||||||||||||||||||| ||||||||||| || Sbjct 388 CGATAGTGTTTTAGGCCGTCCTGGTTCTGATGGAGAGATGGTTTCTGTCAAATCCTTGAA 447 Query 377 AGCTATCAATGAGCAGATTATGTCCTTTGATTACAAAATCTCAAAGATTCAGATTTTGAC 436 ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 448 AGCTATCAATGAGCAGATTATGTCCTTCGATTACGAAATCTCAAAGATTCAGATTTTGAC 507 Query 437 TGCTGATTCCCAAGCATCTTACAAGAATGGAGTTGTGACTCTAGTCACGGGTTTACTGAC 496 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || Sbjct 508 TGCTGATTCCCAAGCATCTTACATGAATGGAGTTGTGACTCTAGTCACAGGTTTACTAAC 567 Query 497 CGTGAAAGAAGGGG-AGAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGCAT-AAT 554 |||||||| ||||| | ||||||||||||||||||||||||||||||||||||| | ||| Sbjct 568 CGTGAAAG-AGGGGCAAAGAATGAGATTTTCTCAATCGTTTTTCCTTGTGCCGC-TGAAT 625 Query 555 GGAAGCTACTTCGTGCTGAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 614 |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct 626 GGAAGCTATTTCGTTCTCAACGATGTCTTTAGGTATGTTGCTGATGAGATTGTTGAACCA 685 Query 615 GAAGCTAACAAGAAAGAGGTCGAGGAGGTGATTCCTCAAATGGTCCAATCAACAGTCACT 674 ||||||||||||||||| ||||||||||| ||||||||| |||||||| |||||| Sbjct 686 GAAGCTAACAAGAAAGAAGTCGAGGAGGTTATTCCTCAAGTGGTCCAACCAACAG----- 740 Query 675 ATTTTGGCAGAGCCGGCGAATGAAGTTGCAGAGCCAGTTACTATCCCTAGTCAACAACCC 734 | || || | | |||||||||||||||| ||||||||||||| ||||||||| Sbjct 741 A-----GC--AG--GTAG-ATGAAGTTGCAGAGCCGGTTACTATCCCTACCCAACAACCC 790 Query 735 GCGGCAAAACAGACTACTGAAAATATAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 794 | ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 791 GAGGCGAAACAGACAACCGAAAATACAGTGAAGAAACCAGAAAGAGCTGTAGCAAATGGA 850 Query 795 CACCCCAAAACCCAGGAGGAAAAAGTTGTGAACGATAAAAGCAATGCTGTGGATGCTCCC 854 || |||||||| |||||||| || |||||||||||||||||||||| ||| ||||||||| Sbjct 851 CATCCCAAAACACAGGAGGATAATGTTGTGAACGATAAAAGCAATGGTGTTGATGCTCCC 910 Query 855 AAGAAATCATATGCAGGA-ATTGTTCAATCTTTGGCTCAAAACGGTGCTACATTCAATGT 913 |||||||||| |||| | ||||| ||| ||||||||||||||||||||||||||||| Sbjct 911 AAGAAATCATTTGCA-CATATTGTCCAAGATTTGGCTCAAAACGGTGCTACATTCAATGC 969 Query 914 CAAAGCTCCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCCTGA 973 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 970 CAAAGCTTCTCCTGCAAAGCCTAAGTCTAAGCCTGTTACAAAGCCGAGTGCTGCTCGTGA 1029 Query 974 ATCCAAAGCTCCTTCGCCGGTTTCTGAACACTCTTCTGCTGAAACAGTCGACCAAC---C 1030 ||||||||||||| | || |||||||||||||||||||||| |||| ||||||||| | Sbjct 1030 ATCCAAAGCTCCTGCTCCTGTTTCTGAACACTCTTCTGCTGCAACAATCGACCAACAAGC 1089 Query 1031 --AGG-TTGTACGATATTTGTTGCCAACTTGCCCATGGACGCGACACCAGAGCAACTCAA 1087 ||| || ||||||||||||||||||||||| ||||||||| |||||||||||||| || Sbjct 1090 TGAGGGTTATACGATATTTGTTGCCAACTTGCTCATGGACGCTACACCAGAGCAACTAAA 1149 Query 1088 TGAAACCTTCAAAGGTTTTGGATCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1147 |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1150 TGAAACATTCAAAGGTTTTGGAGCTATTACGAAAGATGGTATCCAAGTGAGAAGTTACAG 1209 Query 1148 GCTGAAGGGAAACTGTTTCGGGTTTGTGACATTCGAATCGGCTGAAGCTGTGAAATTGGT 1207 ||| |||||||||||||| || ||||||||||||| ||| |||||||||||||||||||| Sbjct 1210 GCTCAAGGGAAACTGTTTTGGCTTTGTGACATTCGCATCTGCTGAAGCTGTGAAATTGGT 1269 Query 1208 CCTCCAGGCTCACAAAGGCTTAGCCATCAGAATCGGAAACCGCAA-AGTTTCAATAGAAG 1266 ||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||| Sbjct 1270 CCTCCAGGCTCACAAAGAATCAGCCATCAGAATCGGAAACCG-AAGAGTTTCAATAGAAG 1328 Query 1267 AGAAACGAGGCAACAACGATAATGGAAGACCCTCAACGCGAAATGGAGGTTATAGGAACG 1326 |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||| Sbjct 1329 AGAAACGAGGCAACAACGATAATGGAAGACCCGCAATGCGAAACGGAGGTTATAGGAACG 1388 Query 1327 AGAACGGTTACAGAAACGATGGGGT-TAGGCCTAGAGGCAACGGTTTCAATGGAGGTCGA 1385 | ||||||||||||||||||||| | ||||||| |||||||||||| ||||||||||||| Sbjct 1389 ACAACGGTTACAGAAACGATGGG-TATAGGCCTCGAGGCAACGGTTCCAATGGAGGTCGA 1447 Query 1386 GGCCATGGAAGAAATGGATCCGAGAGACGGGGTGAATCACGCAACGGTGAGGCTTACAAT 1445 ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| Sbjct 1448 GGCTATGGAAGAAATGGATCTGAGAGACGGGGTGAATCACGCAATGGTGAGGCTCACAAT 1507 Query 1446 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAAAAGCTGGCCGTGAAAATGCTCAATCC 1505 ||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||| Sbjct 1508 GGTGATGGCAAAGTTCATCAGAACGGTACGGTAGAAGCTAGCCGTTAAAATACTCAATCC 1567 Query 1506 AGAGGCTAAACAAGTTTGAAGTCATTTTCTTAAACTCTGATGTGTTCTTATTGTTCATTT 1565 ||||||||||||||||||||||||||| |||||||||| |||||| || |||||||||| Sbjct 1568 AGAGGCTAAACAAGTTTGAAGTCATTTG-TTAAACTCTGTTGTGTTATTGTTGTTCATTT 1626 Query 1566 GAAAATGAGAATCTGAAGTTTTATAGGAAGAGATAGTGAGAGGGACagagagagagagag 1625 |||| |||| | ||||||||||||||||||||||||||| |||||||||| Sbjct 1627 GAAATTGAG-----G---TTTTATAGGAAGAGATAGTGAGAGGGA--GAGAGAGAGA--- 1673 Query 1626 aTTAGAAGTTCTTTTGGAGTAGGTTTATCTCTTTAGGTGATAATCCCTTCTTTCATTTGA 1685 |||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct 1674 -TTAGAAGTTCTTTTGGAGTAGGTTTATCTCTT-AGGTGATAATCCCTTCTTT-----GA 1726 Query 1686 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACTTTC 1730 ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1727 GATTTTGTTTGGGATAACAAAAATTTGATGATTACTTTTACCTTC 1771 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85541728680 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5