BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471592 Length=1254 Score E Sequences producing significant alignments: (Bits) Value AT1G14260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily... 1332 0.0 > AT1G14260.1 | Symbols: | RING/FYVE/PHD zinc finger superfamily protein | chr1:4872856-4874907 FORWARD LENGTH=1378 Length=1378 Score = 1332 bits (721), Expect = 0.0 Identities = 904/987 (92%), Gaps = 33/987 (3%) Strand=Plus/Plus Query 299 GAGTGTCGTATTTGTCAAGAGGAATGTGATATTAAGAATCTTGAGAGTCCATGTTCTTGC 358 |||||||| |||||||| || ||||||||||||||||||||||||||||| ||| ||||| Sbjct 373 GAGTGTCGGATTTGTCAGGATGAATGTGATATTAAGAATCTTGAGAGTCCTTGTGCTTGC 432 Query 359 AATGGCAGCTTAAAGTATGCTCACAGAAAATGTGTTCAACGTTGGTGCAATGAAAAGGGA 418 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 433 AATGGCAGCTTAAAGTATGCTCACAGAAAATGTGTTCAACGTTGGTGTAATGAAAAGGGA 492 Query 419 AACACTACATGCGAAATCTGTCATCAGCCATACCAAGCTGGATATACCTCACCACCACCT 478 ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 493 AACACTATATGCGAAATCTGTCATCAGCCATACCAAGCTGGATATACCTCTCCACCACCA 552 Query 479 CCACCCCAATCAGAAGAAACTACTATTGACATTGGTGGAGGATGGAGAATCTCAGGTTTG 538 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 553 CCACCACAATCTGAAGAAACTACTATTGACATTGGTGGAGGATGGAGAATCTCGGGTTTG 612 Query 539 GATTTAGATGATCCACGTCTCTTGGCAATAGCAGAAGCCGAACGTCAGATTTTAGAATCG 598 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 613 GATTTAGATGATCCACGTCTCTTGGCAATAGCAGAAGCTGAACGTCAGATTTTAGAATCA 672 Query 599 GAGTATGATGATTATACAGCTTCAGATACCAATGGAGCTGCATTTTTCCGCTCAGCTGCT 658 || |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 673 GAATATGATGATTATACAGCTTCAGATACCAGTGGAGCTGCATTTTTCCGCTCTGCTGCT 732 Query 659 CTAATATTGATGACTCTTCTTCTATTGCGACATGCACTGACTATACCAGATTATGCAGAT 718 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 733 TTAATATTGATGACTCTTCTTCTATTGCGACATGCACTGACTATACCAGATTATTCAGAT 792 Query 719 GGTG-A-A-GATGACCCTTCTTCAATACTTTCTCTTTTCTTACTCCGAGCTGCCAGTTTT 775 ||| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 793 AGTGAAGATGATGATCCTTCTTCAATACTTTCTCTTTTCTTACTCCGAGCTGCCAGTTTT 852 Query 776 CTTCTTCCTTGCTACATCATGGCATCAGCCATCAGTATCCTGCATCGCCGTAGACAAAGA 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 853 CTTCTTCCTTGCTACATCATGGCATCAGCCATCAGTATCCTGCATCGCCGTAGACAGAGA 912 Query 836 CAGGAAGCAGCGGCCTTAGCCACTCGGTTTGCGTTGGTGCTCAGCTCGCGGCAACCCAGA 895 ||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| ||| Sbjct 913 CAGGAAGCAGCGGACTTGGCCACTCGGTTTGCGTTGGTGCTCAGCTCGCGCCAACCTAGA 972 Query 896 GCCGTGATTAATTATTTGTCAATGGAGCCGTGATTT-A-A-T---A------G--T---A 938 |||||||||||||||||||||||||||| |||||| | | | | | | | Sbjct 973 CCCGTGATTAATTATTTGTCAATGGAGCCATGATTTTATAGTTCCACTCTAAGAGTTTCA 1032 Query 939 --T--AT--GCTTTTCAA-TGATTTCATCAGCAAAT-GATTCATGAACTGCTGTTATAAG 990 | || ||||||||| | |||||||||| ||| ||||||||||||||||||| ||| Sbjct 1033 GGTGTATATGCTTTTCAAAT-ATTTCATCAGAAAAAAGATTCATGAACTGCTGTTAAAAG 1091 Query 991 AGTGGTTTGCAATTTGATATCAACAAGGACCATCAAAAGATCTACATGATGGTCCTTCTG 1050 |||||||| ||||||| || ||||||| ||||||| |||||||||||||||||||||||| Sbjct 1092 AGTGGTTTACAATTTGGTAGCAACAAGAACCATCACAAGATCTACATGATGGTCCTTCTG 1151 Query 1051 AATCGGCTTTCTTACAAACAAGGAATGTCCTAACTTAGTGCAGAGTTTTTTCTTATA-A- 1108 |||| ||||||||||||||||||| |||||||||||||||||||||||||| || || | Sbjct 1152 AATCAGCTTTCTTACAAACAAGGAGTGTCCTAACTTAGTGCAGAGTTTTTTTTTTTACAA 1211 Query 1109 GTATTCGATTCTAAGAAAGTTTGTGTATGTAGATTAAA-AGTTTCTGATTCTGTGGCATT 1167 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||| Sbjct 1212 GTATTCGATTCTAAGAAAGATTGTGTATGTAGATTAAAGAGTTTCTGATTCTGTAGCATT 1271 Query 1168 AAGTTTTTCAATAACACTCGTTTGGGAGATGAGCATTTCACTTTTTTAAGaaaaaaaaaa 1227 ||| |||||||||||||| | ||| ||||||||||||||||||||| | | ||| ||||| Sbjct 1272 AAGATTTTCAATAACACTTGATTGAGAGATGAGCATTTCACTTTTT-AGGTAAAGAAAAA 1330 Query 1228 CGAGACACATAATTTGTAACCTGTGTA 1254 ||||||||||||||||||| ||||||| Sbjct 1331 CGAGACACATAATTTGTAATCTGTGTA 1357 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61646269260 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5