BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471614
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14400.1 | Symbols: UBC1, ATUBC1 | ubiquitin carrier protein... 1362 0.0
AT2G02760.1 | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating en... 608 3e-173
> AT1G14400.1 | Symbols: UBC1, ATUBC1 | ubiquitin carrier protein
1 | chr1:4927011-4928690 REVERSE LENGTH=995
Length=995
Score = 1362 bits (737), Expect = 0.0
Identities = 842/891 (95%), Gaps = 13/891 (1%)
Strand=Plus/Plus
Query 23 AtttttttttCCCATTTCTCTCATCGCACGGTGAAATAAATCGAGAATCGCCGACCTGAA 82
||||||||| ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 72 ATTTTTTTTACCCATTTCTCTCATCGCACGGTG--AT--ATTGAGAATCGCCGACCTGAA 127
Query 83 TCGATCGG-GTTC-TTCTCTGATCACCGGCGGTCAACGCCGC-GAACACAGATGTTTGTT 139
|||||||| | ||||||||| ||||||||||||| |||| ||||||| |||||||||
Sbjct 128 TCGATCGGAAAACTTTCTCTGATTACCGGCGGTCAACACCGCTGAACACATATGTTTGTT 187
Query 140 TGACGACCTCTTCTCGCCGTGATCTTTTTACCTCAACAACGAGATCTGTTTCCACGAAAG 199
||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 188 TGACGACCTCTTCTCTCCGCGATC--TTTACCTCAACAACGAGATCTGTTTCCACGAAAG 245
Query 200 AACGGAGGATGTCGACGCCAGCTAGGAAGAGGTTGATGAGGGATTTCAAGAGGTTGCAGC 259
|| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 246 AAAGGAGGATGTCGACGCCAGCAAGGAAGAGGTTAATGAGGGATTTCAAGAGGTTGCAGC 305
Query 260 AAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAATATCATGCTCTGGAATG 319
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 306 AAGACCCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAACATTATGCTCTGGAATG 365
Query 320 CTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGC 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 CTGTCATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGC 425
Query 380 AGTTCTCTGAAGATTATCCTAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTC 439
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AGTTCTCTGAAGATTATCCCAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTC 485
Query 440 ATCCAAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTC 499
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 ATCCTAATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTC 545
Query 500 CAATATATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATC 559
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CAATCTATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATC 605
Query 560 CGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGTGAGTACA 619
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 606 CGAATTCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGCGAGTACA 665
Query 620 ACAGAAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTAGTAGTTTGATG 679
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 666 ACAGGAGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTAGTAGTTTGTTG 725
Query 680 TAAGCGATGTAGCTCTGTCTCCTTTCTCACAATCACAATTCAGCAAAACAGCTTTCTTCT 739
|||||| ||||||||| ||| ||||||| ||||||| ||||||||| ||||||||||||
Sbjct 726 TAAGCGTTGTAGCTCTCTCTACTTTCTCTCAATCACGATTCAGCAA--CAGCTTTCTTCT 783
Query 740 CTTTTCATTCATGTCTTGTGTTTCCGAAACTATTTAAGTGATTCAATGCTTTGATGTAAC 799
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 784 CTTTTCATTCATGTCTTGTGTTTCCAAAACTATTTAAGTGATTCCATGCTTTGATGTAAC 843
Query 800 TCAACATCCTTTAAAAAACAACTTTGTACCAAACCAACTGAATTATTCACTTTTGTGTAT 859
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 844 CCAACATCCTTAAAAAAACAACTTTGTACCAAACCATCTGAATTATTCACTTTTGTGTAT 903
Query 860 ATATGTATTACGATTTTCTTGCTAGGTACCGAAAA-AACCTTTGTAACCAA 909
|||||||||||||||| |||||||| ||| |||| ||| |||||| ||||
Sbjct 904 ATATGTATTACGATTTACTTGCTAGCTACAAAAAACAAC-TTTGTACCCAA 953
> AT2G02760.1 | Symbols: ATUBC2, UBC2 | ubiquiting-conjugating
enzyme 2 | chr2:773684-775371 FORWARD LENGTH=934
Length=934
Score = 608 bits (329), Expect = 3e-173
Identities = 419/464 (90%), Gaps = 0/464 (0%)
Strand=Plus/Plus
Query 205 AGGATGTCGACGCCAGCTAGGAAGAGGTTGATGAGGGATTTCAAGAGGTTGCAGCAAGAC 264
||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 251 AGGATGTCGACTCCAGCGAGGAAGAGATTGATGAGGGATTTCAAGAGGTTGCAGCAAGAC 310
Query 265 CCACCTGCGGGTATTAGTGGTGCTCCACAGGACAACAATATCATGCTCTGGAATGCTGTC 324
|||||||| || ||||||||||||||||| ||||||||||||||| | |||||||||||
Sbjct 311 CCACCTGCAGGAATTAGTGGTGCTCCACAAGACAACAATATCATGTTGTGGAATGCTGTT 370
Query 325 ATATTTGGGCCTGATGACACACCATGGGATGGAGGTACTTTCAAACTCTCACTGCAGTTC 384
||||| ||||||||||| || || ||||||||||||||||||||| | |||||||||||
Sbjct 371 ATATTCGGGCCTGATGATACCCCTTGGGATGGAGGTACTTTCAAATTGTCACTGCAGTTT 430
Query 385 TCTGAAGATTATCCTAATAAACCACCAACAGTTCGGTTTGTGTCACGGATGTTTCATCCA 444
|| ||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 431 TCGGAAGATTATCCAAATAAACCACCAACAGTGCGGTTTGTTTCACGGATGTTCCATCCA 490
Query 445 AATATTTATGCAGATGGGAGTATCTGCTTGGACATTCTACAAAACCAGTGGAGTCCAATA 504
|| |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 491 AACATTTATGCTGATGGGAGTATATGCTTGGACATTCTCCAAAACCAATGGAGTCCAATA 550
Query 505 TATGATGTTGCTGCTATACTTACCTCCATCCAGTCCTTGCTCTGTGACCCTAATCCGAAT 564
|| ||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 551 TACGATGTCGCTGCTATACTAACCTCCATTCAGTCATTGCTATGTGATCCTAATCCGAAT 610
Query 565 TCTCCTGCAAACTCGGAAGCTGCTCGGATGTACAGCGAAAGCAAGCGTGAGTACAACAGA 624
||||||||||| ||||||||||| || |||| ||| ||||||||||| ||||||||||||
Sbjct 611 TCTCCTGCAAATTCGGAAGCTGCACGAATGTTCAGTGAAAGCAAGCGCGAGTACAACAGA 670
Query 625 AGAGTGCGTGATGTTGTTGAGCAAAGCTGGACTGCTGACTAGTA 668
||||| || || ||||| || |||||||||||||| ||||||||
Sbjct 671 AGAGTCCGCGAGGTTGTCGAACAAAGCTGGACTGCCGACTAGTA 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5