BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471620
Length=525
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14450.1 | Symbols: | NADH dehydrogenase (ubiquinone)s | ch... 758 0.0
> AT1G14450.1 | Symbols: | NADH dehydrogenase (ubiquinone)s |
chr1:4946218-4947576 REVERSE LENGTH=535
Length=535
Score = 758 bits (410), Expect = 0.0
Identities = 491/529 (93%), Gaps = 9/529 (2%)
Strand=Plus/Plus
Query 1 AATCGAACACCGGCGAAAATGGCGAAGCCTTTGGGAACTACCGGCGAATTTTTCCGGCGA 60
||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 AATCGAATACCTGAGAAAATGGCGAAGCCTTTGGGAACAACCGGCGAATTTTTCCGGCGA 60
Query 61 AGAGATGAATGGAGGAAGCATCCAATGCTTTCGAATCAAATGAGACACGCTCTTCCCGGA 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AGAGATGAATGGAGGAAGCATCCGATGCTTTCGAATCAAATGAGACACGCTCTTCCCGGA 120
Query 121 CTTGGCATCGGAGTCGCCGCCTTCTGCGTTTACCTCGTTGGTGAGCAGATCTACAACAAA 180
||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 121 CTTGGAATCGGCGTCGCCGCCTTCTGCGTTTATCTCGTCGGTGAGCAGATCTACAACAAA 180
Query 181 GCTTTGGCTCCTTCCAAATCATCTCACCACCACCAGGAACAGACTGCTCCGTCTCACTGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTTTGGCTCCTTCCAAATCATCTCACCACCACCAGGAACAGACTGCTCCGTCTCACTGA 240
Query 241 AGACCATCGATGTTCTTGGATGAGATGCTTGAAACAGTGGCACAAGGCTGAACTCAAGG- 299
||| |||| | ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 241 AGAGCATCTTTCTTCTTCGATGAGATGCTTGAAACAGTGGCACAAGGCTGAACTCAGGGT 300
Query 300 CTTCTTCTTGGTTACTAGCTTTTCATGGGATTGTCTTAATAATCATGTTTAAATCAAACA 359
|| ||||||||||||||| ||||| | |||||||||||||||||||||||||||| || |
Sbjct 301 CT-CTTCTTGGTTACTAG-TTTTCGTTGGATTGTCTTAATAATCATGTTTAAATCGAATA 358
Query 360 CAAAGAATTTGATTTCTCTGTTTGAATTGTAAAGCTTGTTGGCGCAAAGGTTCTCTTTGT 419
||||||||||||| ||| | |||||| |||||||||||||||| ||||||||||||||||
Sbjct 359 CAAAGAATTTGATATCTATATTTGAACTGTAAAGCTTGTTGGCTCAAAGGTTCTCTTTGT 418
Query 420 ATCCCACAAGTTAAGATTTTG-ATTATGTCTT-TCTAAGTTGATACTTGCTACTTAGCTA 477
||| |||||||||||||| || || || |||| ||| | |||||||||||||||||||||
Sbjct 419 ATCGCACAAGTTAAGATTCTGCAT-AT-TCTTATCTTATTTGATACTTGCTACTTAGCTA 476
Query 478 AACTGCGTCGTTTAAGAGATCGTA--TTTCAGGTTTATTATATAACTTT 524
||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 477 AACTGCGTCGTTTAAGAGATCGTTGCTTTCAGGTTTATTATATAACTTT 525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25117073500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5