BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471678
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14890.1 | Symbols: | Plant invertase/pectin methylesterase... 1160 0.0
AT2G01610.1 | Symbols: | Plant invertase/pectin methylesterase... 137 1e-31
> AT1G14890.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:5137014-5137957 FORWARD
LENGTH=944
Length=944
Score = 1160 bits (628), Expect = 0.0
Identities = 797/875 (91%), Gaps = 25/875 (3%)
Strand=Plus/Plus
Query 1 CTCAATGCCTACATAAACCTTCCAATCTCACATGTAAACTCGTAAC----AAGAAATAAA 56
||||||| ||||||||||| ||||||||||||||| |||||| ||| ||||||||||
Sbjct 1 CTCAATGTCTACATAAACCCTCCAATCTCACATGTTAACTCGAAACAAAGAAGAAATAAA 60
Query 57 CAGAGTTAAAAACTTTAAA-CTTTAAAATGGGAAGTAAGCTTTATACGACGACGTTTCTC 115
|||||| |||||| ||||| | |||||||||| || ||||||||||||||||| |||||
Sbjct 61 CAGAGTAAAAAAC-TTAAAGC-TTAAAATGGGGAGGCAGCTTTATACGACGACGGTTCTC 118
Query 116 TACTTAGTCACCTTACTCTTCATTTTCCGGACAATCTCAGCCGTCCGTTTCCCTCCGGCA 175
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 119 TACTTAGTCACCCTACTCTTCATTTGCCGGACAATCTCAGCCGTCCGTTTCCCTCCGGAA 178
Query 176 CAGCCAACAACCGACGACCTAGATTTCATCCGTACTAGCTGCAACGCAACGCTTTATCCA 235
|| ||||||||||| || ||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 179 CAACCAACAACCGATGATCTAGATTTCATCCGTACGAGCTGCAACACAACGCTGTATCCA 238
Query 236 GACGTATGTTTCACGTCTCTAGCTGGATACGCCTCCGCCGTCCAAGATAATCCGGCGAGA 295
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 239 GACGTATGTTACACGTCTCTAGCTGGATACGCCTCCGCCGTCCAAGATAATCCGGCAAGG 298
Query 296 CTAGCTAAACTGGCAATCGGCGTTTCCCTCTCCCGCGCAAAATACACGGCGGCTTACCTC 355
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 299 CTAGCTAAACTCGCAATCGGCGTTTCTCTCTCCCGCGCAAAATACACGGCGGCTTACCTC 358
Query 356 TCCAAACTCTCACGTCGCGCTGCCTCAGCCGCCGTCCACGACTGCGTTTCGAACGTTGGA 415
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 359 TCCAAACTCTCACGTCGCGCTGCCTCAGCTGCTGTCCACGACTGCGTTTCGAACGTGGGA 418
Query 416 GACGCCGTAGATCAGATGCGTGGCTCCCTAAGGCAGCTTCGAGAGATGAACCATCGTCGT 475
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 419 GATGCCGTGGATCAGATGCGTGGCTCCCTAAGGCAGCTCCGAGAGATGAACCACCGTCGT 478
Query 476 CCCGGAGCGCCGGCTTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCTGCG 535
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 479 CCCGGAGATCCGGCGTTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCGGCG 538
Query 536 TTgacggacgaggagacgtgtacggatgggatcacggaggagatggaggacggagagacg 595
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 539 TTGACGGACGAGGAGACGTGTACGGATGGGGTCACGGAGGAGATGGAAGACGGAGAGACG 598
Query 596 aagacggCGATTTGCGATAGAGTCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTTGCT 655
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 AAGACGGCTATTTGCGATAGAGTCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTCGCT 658
Query 656 CTCGTTAACACATATGCCAATAATGGAGCCTAAGCAAAGCTAAGCTAGGTCTTGAAAC-C 714
|||||||| || || ||||| |||||||||||| | || |||||||||||||||||| |
Sbjct 659 CTCGTTAATACCTACGCCAACAATGGAGCCTAA-CTAA-CTAAGCTAGGTCTTGAAATTC 716
Query 715 CTAAAGTTATAAAAATACTTGTATATATA---GTGT---GCT-TA-G-TT--TTT-TA-T 761
||||||||||||||| ||||||||||||| |||| | | | | || ||| || |
Sbjct 717 CTAAAGTTATAAAAACACTTGTATATATATATGTGTTAAGTTGTGTGCTTAGTTTATAAT 776
Query 762 GTGTATTCGAGGCTTTGAAACCGAGTTAGAACTCTGAGTTTTGTGTATTCAAATTATACA 821
||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 777 GTGTATTCGAGGCTTTGAAACCGAGTTAGAACTCTGAGTTTGG-GTGTTCAAATTATACA 835
Query 822 TAAATCTATGTTTGGTTGTATTAGTATTT-TATAT 855
| |||||||||||| |||||||| |||| |||||
Sbjct 836 TTAATCTATGTTTGATTGTATTAATATTAATATAT 870
> AT2G01610.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:273917-274820 REVERSE
LENGTH=904
Length=904
Score = 137 bits (74), Expect = 1e-31
Identities = 159/199 (80%), Gaps = 10/199 (5%)
Strand=Plus/Plus
Query 491 TTTAGGTTTCAGATGAGTAACGTGCAGACGTGGATGAGCGCTGCGTTgacggacgaggag 550
|||||||| ||||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct 497 TTTAGGTTCCAGATGAGTAACGTGCAGACGTGGATGAGTGCAGCATTGACGGATGAGGAC 556
Query 551 acgtgtacggatgggatcacggaggagatggaggacggag-a--gacgaagacggC-GAT 606
|||||||||||||| || | || | ||||| || |||| | || |||||| | | |
Sbjct 557 ACGTGTACGGATGG-ATTT-GAAG-ATATGGACGAAGGAGGATTGATTAAGACGACCG-T 612
Query 607 TTGCGATAGAG-TCGCCGACGTCAAGAGGTTCACGAGTAATGCGCTTGCTCTCGTTAACA 665
||| ||| | | ||| || || |||||| | ||||||||||| ||||| || || ||||
Sbjct 613 TTGTGATCG-GCTCGAGGAAGTGAAGAGGCTAACGAGTAATGCTCTTGCCCTTGTCAACA 671
Query 666 CATATGCCAATAATGGAGC 684
| || ||||| ||||||||
Sbjct 672 CTTACGCCAACAATGGAGC 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5