BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471680
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription fa... 2772 0.0
> AT1G14920.1 | Symbols: GAI, RGA2 | GRAS family transcription
factor family protein | chr1:5149226-5151354 FORWARD LENGTH=2129
Length=2129
Score = 2772 bits (1501), Expect = 0.0
Identities = 1798/1936 (93%), Gaps = 42/1936 (2%)
Strand=Plus/Plus
Query 59 TCCCAACCAATCCCCGAAGCTAAAGATTCTTCACCTTCCCAAATAAAGCTAAACCTAGAT 118
||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 78 TCCTAACCGATCCCCGAAGCTAAAGATTCTTCACCTTCCCAAATAAAGCAAAACCTAGAT 137
Query 119 CCGACATTGAAGG-AAAACCTTTTAGATCCATCTCTTG----AAACCCAACCATGAAGAG 173
||||||||||||| ||||||||||||||||||||| || ||| ||||||||||||||
Sbjct 138 CCGACATTGAAGGAAAAACCTTTTAGATCCATCTC-TGAAAAAAAACCAACCATGAAGAG 196
Query 174 AGATCATC--C-TCAACATCATCAAGATAAGAAGACGATGATGATGATGAATGAAGAAGA 230
|||||||| | ||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 197 AGATCATCATCATCATCATCATCAAGATAAGAAGAC--T-ATGATGATGAATGAAGAAGA 253
Query 231 CGACGCTAACGGCATGGATGAGCTTTTAGCCGTTCTTGGTTACAAGGTGAGGTCATCGGA 290
||||| ||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||
Sbjct 254 CGACGGTAACGGCATGGATGAGCTTCTAGCTGTTCTTGGTTACAAGGTTAGGTCATCCGA 313
Query 291 AATGGCGGATGTTGCTCAGAAACTCGAGCAGCTTGAAGTTATGATGTCAAATGTTCAAGA 350
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 314 AATGGCTGATGTTGCTCAGAAACTCGAGCAGCTTGAAGTTATGATGTCTAATGTTCAAGA 373
Query 351 AGACGATCTTTCTCAACTCGCTACTGAGACCGTTCACTACAATCCGGCGGAGCTTTACAC 410
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 374 AGACGATCTTTCTCAACTCGCTACTGAGACTGTTCACTATAATCCGGCGGAGCTTTACAC 433
Query 411 GTGGCTTGATTCTATGCTTTCTGACCTCAATCCTCCGTCGTCTAACGCCGAGTACGATCT 470
|||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||
Sbjct 434 GTGGCTTGATTCTATGCTCACCGACCTTAATCCTCCGTCGTCTAACGCCGAGTACGATCT 493
Query 471 TAAAGCTATTCCCGGTGACGCGATTCTGAATCAGTTCGCTATCGATTCGTCTTCTTCGTC 530
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 494 TAAAGCTATTCCCGGTGACGCGATTCTCAATCAGTTCGCTATCGATTCGGCTTCTTCGTC 553
Query 531 GAACCAAGGCGGCGGAG-A--TACGAATACTACAAACAAGCGTTTGAAATACTCTAACGG 587
|||||||||||||||| | |||| |||||||||||||||| ||||||| ||| |||||
Sbjct 554 TAACCAAGGCGGCGGAGGAGATACGTATACTACAAACAAGCGGTTGAAATGCTCAAACGG 613
Query 588 CGTCGTGGCAACAACAACAACGACGGCTGAGTCAATTCGGCCTGTAGTCCTGGTTGACTC 647
|||||||| ||| || ||| ||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 614 CGTCGTGGAAACCACTACAGCGACGGCTGAGTCAACTCGGCATGTTGTCCTGGTTGACTC 673
Query 648 GCAGGAGAACGGTGTGCGTCTTGTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTGCAGAA 707
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 674 GCAGGAGAACGGTGTGCGTCTCGTTCACGCGCTTTTGGCTTGCGCTGAAGCTGTTCAGAA 733
Query 708 GGAGAATCTGACTCTAGCAGAAGCTCTGGTGAAGCAGATCGGATTCTTAGCTGTTTCTCA 767
|||||||||||| |||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 734 AGAGAATCTGACTGTAGCGGAAGCTCTGGTGAAGCAAATCGGATTCTTAGCCGTTTCTCA 793
Query 768 AATCGGAGCAATGAGAAAAGTCGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATCTA 827
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 794 AATCGGAGCGATGAGAAAAGTCGCTACTTACTTCGCCGAAGCTCTCGCGCGGCGGATTTA 853
Query 828 TCGTCTCTCTCCGTCGCAGAGTCCGATTGACCACTCTCTCTCCGATACTCTCCAGATGCA 887
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 854 CCGTCTCTCTCCGTCGCAGAGTCCAATCGACCACTCTCTCTCCGATACTCTTCAGATGCA 913
Query 888 CTTCTACGAGACTTGTCCTTATCTCAAGTTCGCTCATTTCACGGCGAATCAAGCGATTCT 947
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 914 CTTCTACGAGACTTGTCCTTATCTCAAGTTCGCTCACTTCACGGCGAATCAAGCGATTCT 973
Query 948 CGAAGCTTTTCAAGGGAAGAAAAGAGTTCACGTCATTGATTTCTCTATGAGTCAAGGTCT 1007
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 974 CGAAGCTTTTCAAGGGAAGAAAAGAGTTCATGTCATTGATTTCTCTATGAGTCAAGGTCT 1033
Query 1008 TCAATGGCCGGCGCTTATGCAGGCTCTCGCGCTTCGACCTGGTGGTCCTCCGGTTTTCCG 1067
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1034 TCAATGGCCGGCGCTTATGCAGGCTCTTGCGCTTCGACCTGGTGGTCCTCCTGTTTTCCG 1093
Query 1068 GTTAACCGGAATCGGTACACCGGCGCCGGATAATTTCGATTACCTTCACGAAGTTGGGTG 1127
|||||||||||| ||| ||||||| ||||||||||||||||| ||||| |||||||||||
Sbjct 1094 GTTAACCGGAATTGGTCCACCGGCACCGGATAATTTCGATTATCTTCATGAAGTTGGGTG 1153
Query 1128 TAAGCTGGCTCATTTAGCGGAGGCGATTCATGTGGAGTTTGAGTACAGAGGATTTGTGGC 1187
|||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||
Sbjct 1154 TAAGCTGGCTCATTTAGCTGAGGCGATTCACGTTGAGTTTGAGTACAGAGGATTTGTGGC 1213
Query 1188 TAACACTTTAGCTGATCTTGATGCGTCGATGCTTGAGCTTAGACCGAGTGAGATTGAATC 1247
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1214 TAACACTTTAGCTGATCTTGATGCTTCGATGCTTGAGCTTAGACCAAGTGAGATTGAATC 1273
Query 1248 TGTTGCGGTTAACTCTGTTTTCGAACTTCACAAGCTCTTAGGACAACCTGGTGCGATCGA 1307
|||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||
Sbjct 1274 TGTTGCGGTTAACTCTGTTTTCGAGCTTCACAAGCTCTTGGGACGACCTGGTGCGATCGA 1333
Query 1308 TAAGGTTCTTGAAGTGGTGAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGA 1367
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 TAAGGTTCTTGGTGTGGTGAATCAGATTAAACCGGAGATTTTCACTGTGGTTGAGCAGGA 1393
Query 1368 ATCGAACCACAATAGTCCGGTTTTCTTGGACCGGTTTACTGAGTCGCTGCATTATTACTC 1427
||||||||| ||||||||| ||||||| || ||||||||||||||| |||||||||||||
Sbjct 1394 ATCGAACCATAATAGTCCGATTTTCTTAGATCGGTTTACTGAGTCGTTGCATTATTACTC 1453
Query 1428 GTCGTTGTTTGACTCGTTGGAAGGAGTGCCGAGTGGTCAAGACAAGGTCATGTCGGAGGT 1487
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1454 GACGTTGTTTGACTCGTTGGAAGGTGTACCGAGTGGTCAAGACAAGGTCATGTCGGAGGT 1513
Query 1488 TTATTTGGGTAAACAGATCTGCAACGTTGTGGCTTGTGATGGACCTGACAGAGTTGAGCG 1547
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1514 TTACTTGGGTAAACAGATCTGCAACGTTGTGGCTTGTGATGGACCTGACCGAGTTGAGCG 1573
Query 1548 CCACGAAACGTTGAGTCAATGGAGGAACCGGTTCGGTTCTACTGGGTTTGCGGCGGCACA 1607
|| |||||||||||||| ||||||||||||||||| ||| ||||||||||||| |||||
Sbjct 1574 TCATGAAACGTTGAGTCAGTGGAGGAACCGGTTCGGGTCTGCTGGGTTTGCGGCTGCACA 1633
Query 1608 TATCGGTTCGAATGCGTTTAAGCAAGCAAGCATGCTCTTGGCTCTGTTCAACGGCGGTGA 1667
||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1634 TATTGGTTCGAATGCGTTTAAGCAAGCGAGTATGCTTTTGGCTCTGTTCAACGGCGGTGA 1693
Query 1668 GGGTTATCGGGTGGAAGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACTCGGCCGCT 1727
||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1694 GGGTTATCGGGTGGAGGAGAGTGACGGCTGTCTCATGTTGGGTTGGCACACACGACCGCT 1753
Query 1728 CATAGCCACCTCGGCTTGGAAACTCTCCACCAGTTAGATGGTGGCTCAATGAATTGATCA 1787
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1754 CATAGCCACCTCGGCTTGGAAACTCTCCACCAATTAGATGGTGGCTCAATGAATTGATCT 1813
Query 1788 GTTTA-CCGGTTATGATGATAGATGTTCCGACCGAA-CCAAAACTAAATCCTACTGTTTT 1845
||| | |||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 1814 GTTGAACCGGTTATGATGATAGAT-TTCCGACCGAAGCCAAA-CTAAATCCTACTGTTTT 1871
Query 1846 -CCTTTTGTCACTTGTTAAGATCTT-T-----A--AT-T--G--AA---AA---TTTTCA 1885
|| ||||||||||||||||||||| | | || | | || || |||| |
Sbjct 1872 TCCCTTTGTCACTTGTTAAGATCTTATCTTTCATTATATTAGGTAATTGAAAAATTTT-A 1930
Query 1886 ATCTCGCTTTCGAGAGttttttttGCAT--ATGTGACATTGGAGGGTAAATTGGATAGGC 1943
|||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1931 ATCTCGCTTTGGAGAGTTTTTTTTTTTTGCATGTGACATTGGAGGGTAAATTGGATAGGC 1990
Query 1944 AGAAATAGAATTATGT 1959
|||||||||| |||||
Sbjct 1991 AGAAATAGAAGTATGT 2006
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97037653485
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5