BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471691
Length=1898
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15020.2 | Symbols: ATQSOX1, QSO2, QSOX1 | quiescin-sulfhydr... 3011 0.0
> AT1G15020.2 | Symbols: ATQSOX1, QSO2, QSOX1 | quiescin-sulfhydryl
oxidase 1 | chr1:5173125-5176223 REVERSE LENGTH=1921
Length=1921
Score = 3011 bits (1630), Expect = 0.0
Identities = 1816/1905 (95%), Gaps = 16/1905 (1%)
Strand=Plus/Plus
Query 1 GTCGTAATAAACACCAGAGACCTTCGCTTCTCAACGGAACAAGGAGGGAAGCTCTTTTTG 60
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||
Sbjct 1 GTCGTAATAAACACCAGAGACCTTTGTTTCTCAACGG---AAGGAGGGAAGCTCTTTTTG 57
Query 61 CTCTTAGATCTTCCCTCTCATTCGGATCAAGCTTC-AATTTTGTATGCTTTACTCGATTT 119
||||||||||||||||||||| ||||||||||||| || ||||||||||||| |||||||
Sbjct 58 CTCTTAGATCTTCCCTCTCATCCGGATCAAGCTTCAAAATTTGTATGCTTTATTCGATTT 117
Query 120 AATGGCGTTGATTCACTTGTTTTTGTTCG-TGGGTCTGGTGAGCCTTGAAGCTGCGGCGT 178
|||| | ||||| |||||||| ||||| | |||||||| |||||||||||||||||||||
Sbjct 118 AATGTCTTTGATACACTTGTTCTTGTT-GTTGGGTCTGCTGAGCCTTGAAGCTGCGGCGT 176
Query 179 CGTTTTCACCGGGATCGCGCTCGATTCTCCGGGACATCGGCAGCAACAACGCCGATCAGA 238
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 177 CGTTTTCACCGGGATCGCGCTCGATTCTCCGGGACATCGGCAGTAACGTCGCCGATCAGA 236
Query 239 AAGACAACGCTCTCGAATTAAACGCTACCAACTTTGATTCAGTTTTTCAAGATTCACCCG 298
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 237 AAGACAACGCTATCGAATTGAACGCTACCAACTTTGATTCAGTTTTCCAAGATTCCCCCG 296
Query 299 CCAAATATGCCGTTTTAGAGTTCTTCGCTCACTGGTGTCCTGCATGTAGAAACTACAAGC 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 297 CCAAATATGCCGTTTTAGAGTTCTTCGCTCACTGGTGCCCTGCATGTAGAAACTACAAGC 356
Query 359 CACATTATGAAAAAGTTGCAAGACTCTTCAATGGGGCAGACGCAGTACATCCTGGTGTTG 418
|||||||||||||||||||||| || |||||||| |||||||||||| |||||||||| |
Sbjct 357 CACATTATGAAAAAGTTGCAAGGCTATTCAATGGAGCAGACGCAGTATATCCTGGTGTCG 416
Query 419 TTTTGATGACCAGAGTTGATTGTGCAATAAAGATGAATGTAAAGCTTTGTGACAAGTTCT 478
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 417 TTTTGATGACCAGAGTTGATTGTGCGATAAAGATGAATGTAAAGCTTTGTGACAAGTTCT 476
Query 479 CCATCAATCATTATCCAATGCTCTTTTGGGCTCCTCCTAAAAAGTTCGTTGGTGGCAGCT 538
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 477 CTATCAATCATTATCCAATGCTCTTTTGGGCTCCTCCTAAAAGGTTCGTTGGTGGCAGCT 536
Query 539 GGGGACCTAAACAAGAGAAAAGTGAGATAAGCGTAGTCGATGAATGGCGCACTGCTGATC 598
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 537 GGGGACCTAAACAAGAGAAAAATGAGATAAGCGTAGTCAATGAATGGCGCACTGCTGATC 596
Query 599 TTTTGTTAAACTGGATCAACAAGCAGATAGGCAGCTCTTACGGCTTAGATGATCAGAAAT 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TTTTGTTGAACTGGATCAACAAGCAGATAGGCAGCTCTTACGGCTTAGATGATCAGAAAT 656
Query 659 TTGGAAATC-TCTTGACAAATATATCTGACCAGGAACAGATTTCTCAGGCCATATTTGAC 717
| ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TAGGAAATCTTC-TGTCAAATATATCTGACCAGGAACAGATTTCTCAGGCCATATTTGAC 715
Query 718 ATTGAGGAGGCAACTGAAGAAGCTTTTGATATCATTTTGTCACATAAGGCAATCAAGTCA 777
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 716 ATTGAGGAGGCAACTGAAGAAGCTTTTGATATCATTTTGGCACATAAGGCAATCAAGTCA 775
Query 778 TCTGAAACCAGTGCTTCGTTTATTAGATTTCTGCAGCTTTTAGTGGCACATCATCCTTCA 837
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 776 TCTGAAACCAGTGCTTCGTTTATTAGGTTTCTGCAGCTTTTAGTGGCACATCATCCATCA 835
Query 838 AGAAGGTGCCGTACGGGAAGCGCTGAAATTCTTGTGAATTTTGATGATTTATGCCCGTCG 897
|||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 836 AGAAGGTGCCGTACCGGAAGTGCTGAAATTCTTGTGAATTTTGATGATATATGCCCGTCA 895
Query 898 GGCGAATGCTCGTATGACCAGGAATCTGGAGGGAGAGATACCCTACGAAACTTCCATATA 957
||||||||||||||||||||||||||||||| || |||| |||| |||||||||||||||
Sbjct 896 GGCGAATGCTCGTATGACCAGGAATCTGGAGCGAAAGATTCCCTTCGAAACTTCCATATA 955
Query 958 TGTGGAAAGGATGTTCCGCGCGGATACTACAGGTTTTGCCGTGGCAGCAAAAACGAAACC 1017
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGTGGAAAGGATGTTCCGCGTGGATACTACAGGTTTTGCCGTGGCAGCAAAAACGAAACG 1015
Query 1018 AGGGGATTCAGCTGCGGATTATGGGTTTTAATGCATTCGCTTTCAGTGAGGATTGAGGAT 1077
||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 1016 AGGGGATTCAGCTGCGGATTATGGGTTTTGATGCATTCACTTTCCGTGAGGATTGAGGAT 1075
Query 1078 GGAGAAAGTCAGTTTGCATTCACGGCCATTTGTGAGTTCATAAACAACTTCTTCATGTGT 1137
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1076 GGAGAAAGTCAGTTTGCATTCACGGCCATTTGTGATTTCATCAACAACTTCTTCATGTGT 1135
Query 1138 GATGATTGCCGTCGGCATTTTCACGACATGTGCTTAAGCGTCAAAACTCCATTTAAAAAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GATGATTGCCGTCGGCATTTTCACGACATGTGCTTAAGCGTCAAAACTCCATTTAAAAAG 1195
Query 1198 GCCCGTGATA-T-CGTCTTGTGGCTGTGGAGCACACACAACAAGGTCAATGAGAGACTCA 1255
|| ||||||| | || | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 GCACGTGATATTGCG-C-TGTGGCTGTGGAGCACACACAATAAGGTCAATGAGAGACTCA 1253
Query 1256 AGAAGGACGAAGATTCTCTGGGAACAGGAGACCCCAAGTTCCCAAAGATGATATGGCCAC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AGAAGGACGAAGATTCTCTGGGAACAGGAGACCCCAAGTTCCCAAAGATGATATGGCCAC 1313
Query 1316 CAAAGAAGCTTTGCCCGTCGTGTTATCTTTCGAGCACCGAGAAAAACATTGACTGGGATC 1375
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 CAAAGCAGCTTTGCCCGTCGTGTTATCTTTCGAGCACCGAGAAAAACATTGACTGGGATC 1373
Query 1376 ATGATGAAGTCTACAAATTCTTGAAGAAGTACTATGGACAGAAACTGGTGTCCGTTTACA 1435
||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1374 ATGATCAAGTCTACAAGTTCTTGAAGAAGTACTATGGACAGAAACTGGTGTCTGTTTACA 1433
Query 1436 AGAAAAATGGTGACAGTGTGAGCAAGGAGGAGGTGGTTGCAGCTGCAGAAGAGATGGCAG 1495
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1434 AGAAAAATGGTGAGAGTGTGAGCAAGGAGGAGGTTATTGCAGCTGCAGAAGAGATGGCAG 1493
Query 1496 TACCGACCAACGCTCTGGTTGTGCCAGTGGGAGCTGCATTGGCCATAGCACTTGCAAGCT 1555
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TACCGACCAATGCTCTGGTTGTGCCAGTGGGAGCTGCATTGGCCATAGCACTTGCAAGCT 1553
Query 1556 GCGCATTTGGGGCGCTCGCTTGCTACTGGAGGACGCAGCAAAAGAACCGGAAGTATTACC 1615
||||||||||||| || || |||||||||||||||||||| ||||||||||||||| |
Sbjct 1554 GCGCATTTGGGGCACTAGCCTGCTACTGGAGGACGCAGCAGAAGAACCGGAAGTATAATT 1613
Query 1616 ACAATCCACACTATTTAAAGAGATATAATAGTAACTATATGGTTATGAACACATTCAGTA 1675
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1614 ACAATCCGCACTATTTAAAGAGATATAATAGTAATTATATGGTTATGAACACATTCAGTA 1673
Query 1676 ACACTGAAAGTGAAAGGGAAAAGGAGAGATGAGTTAACTTAAA--GAAAAAGCTCACATG 1733
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1674 ACACTGAAAGTGAAAGGGAAAAGGAGAGATGAGTTAACTTAAAAAGAAAAAGCTCACATG 1733
Query 1734 GTTTAACATTCTGAAACTGAGCTTTGTTTTTGTTGTAACTTACAGACAACAGACACAAAG 1793
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1734 GTTTAACATTCTGAAACTGAGCTTTGTTTTTGTTGTAACTTACAGACAACAGATACAAAG 1793
Query 1794 ACGTTGAGGTTGAGATGCCAAAGTCGCCTGCTTCAGGTCTCTTTTCTCTCTTCTCCTCTT 1853
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct 1794 ACGTTGAGGTTGAGATGCCAAAGTCGCCTGCTTCAGGTCCCTTT-C-CTCTTCTCCTCTT 1851
Query 1854 ACAGATTGTATAGATTCTTCTCTTCGAATTTTTGGAATATTCAAT 1898
|| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1852 ACGGATTGTATAGATTCTTCTCTTCAAATTTTTGGAAAATTCAAT 1896
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93975420240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5