BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471698 Length=662 Score E Sequences producing significant alignments: (Bits) Value AT1G15100.1 | Symbols: RHA2A | RING-H2 finger A2A | chr1:519342... 848 0.0 > AT1G15100.1 | Symbols: RHA2A | RING-H2 finger A2A | chr1:5193426-5194203 REVERSE LENGTH=778 Length=778 Score = 848 bits (459), Expect = 0.0 Identities = 628/701 (90%), Gaps = 45/701 (6%) Strand=Plus/Plus Query 1 AAGATGGGGCTACAAGGTCAGCTAAGTGACGTCTCTTCCGATTCAATCCCTCTTATGCTA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 31 AAGATGGGGCTACAAGGTCAGCTAAGTGACGTCTCTTCCGATTCAATCCCTCTTATGCTC 90 Query 61 ATCTCTCTCCTCGCCGTCTTCATCAACCATGTCCGATCTTTCCTTCTCCGTCTCACCGCT 120 ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| || Sbjct 91 CTCTCTCTCCTCGCCGTCTTCATCAACCATCTCCGATCTTTCCTCCTCCGTCTCACCTCT 150 Query 121 AAATCAAATCCTAATCTCCCCGTCGACGATGTCTCTATAGCATCGGGACTAGCCAACATA 180 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 151 AAATCAAATCCTAATCTCCCCGTAGACGATGTCTCTATAGCATCGGGACTAGCCAACATA 210 Query 181 ATCGTGCTCGCCGATCAGCTGAGCTTGAATCGGTTATTCTCGTACCGGTGCGGTGACGGA 240 ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 211 ATCGTTCTCGCCGATCAGCTTAGTTTGAATCGGTTATTCTCGTACCGGTGCGGTGACGGA 270 Query 241 GGAGG-G-----TCCGATTGTGTGGTGTGTTTGTCGAAGCTTAA-GGAAGGTGAAGAGGT 293 || || | ||||||||||| ||||||||||||||| |||| ||||||||||||||| Sbjct 271 GGTGGTGGCGGCTCCGATTGTGTTGTGTGTTTGTCGAAG-TTAAAGGAAGGTGAAGAGGT 329 Query 294 GAGGAAGCTGGAATGTCGACACGTGTACCACAAGAAGTGTTTAGAAGGATGGCTTCATCA 353 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 330 GAGGAAGCTGGAATGTCGACACGTGTTCCACAAGAAGTGTTTGGAAGGATGGCTTCATCA 389 Query 354 ACTCAATTTCACTTGTCCTCTTTGTAGATCTGCTTTGGTCTCCGATGATTGCGTCTCTAA 413 | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 390 ATTCAATTTCACTTGTCCTCTTTGTAGATCTGCTTTGGTTTCCGATGATTGCGTCTCTAA 449 Query 414 AACGCAGCGCCGCGTTGGAAGGGATTTGATCTCGTGTTTCTCTCTCCACTGAGT------ 467 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 450 AACGCAGCGTAGCGTTGGGAGGGATTTGATCTCGTGTTTCTCTCTCCACTGAGTAAAAGA 509 Query 468 T-------TGA------TCCGACGGCATCCGAGAGATCTACGGTGGCTGGCTGGTTCGGT 514 | ||| ||||| || ||| |||||||||||||||||||||||||||||| Sbjct 510 TCGGAAGATGAAGAAGATCCGATGGTATCTGAGAGATCTACGGTGGCTGGCTGGTTCGGT 569 Query 515 TTGACCACGCG--TGC-CCC-TTCTTTTCTCGGtttttttttttGAGGTCTCTCTCTTCT 570 ||||||||||| ||| ||| |||||||||||| |||||||| ||||||||| |||||| Sbjct 570 TTGACCACGCGCGTGCGCCCCTTCTTTTCTCGGATTTTTTTT--GAGGTCTCTTTCTTCT 627 Query 571 GTGAGAGGAGAGGACCtttt-t--gtttg-ttttttc----acttctcgatttcgttt-t 621 ||||||||||| ||||||| | ||||| |||||| |||| ||||||| | | | Sbjct 628 GTGAGAGGAGA--ACCTTTTGTTTGTTTGGTTTTTTTTTTTACTTTTCGATTTGGAATAT 685 Query 622 gtaaattttgaaatatacaaattttcACCGTTTGTATCTTT 662 |||||||||||| |||||||||||||||||||||||||||| Sbjct 686 GTAAATTTTGAA-TATACAAATTTTCACCGTTTGTATCTTT 725 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31999151639 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5