BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471702
Length=2771
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15130.1 | Symbols: | Endosomal targeting BRO1-like domain-... 4351 0.0
> AT1G15130.1 | Symbols: | Endosomal targeting BRO1-like domain-containing
protein | chr1:5206002-5209915 REVERSE LENGTH=2823
Length=2823
Score = 4351 bits (2356), Expect = 0.0
Identities = 2667/2811 (95%), Gaps = 45/2811 (2%)
Strand=Plus/Plus
Query 1 AAGGAAACCAAGAATCGAAGAAAATTAGAAAAATCGGAAGAGCGATC------------- 47
||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 AAGGAAACCAAAAATCGAAGAAAATTAGAAAAATCGGAAGAGCGATCGAAGAGGATTTTG 60
Query 48 AACCGCCATGGCTTCTTCTTCGCTCTCTAATCTGATGCTCGCCATTCATGAGAAGAAGAC 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACCGCCATGGCTTCTTCTTCGCTCTCTAATCTGATGCTCGCCATTCATGAGAAGAAGAC 120
Query 108 AAACTCCGTTGATCTCTACCGTCCTCTCCGCAACTACGTTACTTTCACCTACTCTGAGCG 167
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAGCTCCGTTGATCTCTACCGTCCTCTCCGCAACTACGTTACTTTCACCTACTCTGAGCG 180
Query 168 CGAGGCTCAGCTTATAGACGACGATCTCGAGACCCTGAAGCAGCTCCGATCCGATTTAGA 227
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 181 CGAGGCTCAGCTTATAGACGACGATCTCGAGACCTTGAAGCAGCTCCGATCCGATATAGA 240
Query 228 ACGCG-TTCCTGATCCCTCTCC-GTCCGCTCGGCGAGACCTTCTCATCTCCTATTACAAA 285
||||| |||| ||||| ||||| | | |||||||||||||||||||||||||||||||||
Sbjct 241 ACGCGTTTCC-GATCCTTCTCCAG-CTGCTCGGCGAGACCTTCTCATCTCCTATTACAAA 298
Query 286 GTTCTTTGTCTTGTGGAGACGCGATTTCCAATTTCCCCTGACAAGGATCATGTCAACGCC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 GTTCTTTGTCTTGTGGAGACGCGATTTCCAATTTCCCCTGACAAGGATCATGTCAACGCC 358
Query 346 GTCTCTTTCTTATGGTACGATGCTTTCAAGCAAAAGCACAAAGCTACTCAGCAGAACATT 405
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 GTCTCTTTCGTATGGTACGATGCTTTCAAGCAAAAGCATAAAGCTACTCAGCAGAACATT 418
Query 406 CATCTT-GAGAAAGCCGCTGTTCTCTTCAATCTTGGTGCTACCTACAGCCAGATTGGACT 464
||| || |||||||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 419 CAT-TTGGAGAAAGCAGCTGTTCTATTCAATCTTGGTGCTAGCTACAGCCAGATTGGACT 477
Query 465 CGGTCATGATCGAACCACCGTGGATGGGCGTCGTCAGGCCTCACATGCGTTCATCGCTGC 524
||||||||| || |||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 478 CGGTCATGACCGCACCACCGTCGATGGGCGTCGTCAGGCTTCACATGCGTTCATGGCTGC 537
Query 525 AGCAGGGGCGTTCGCTTACTTGAAGGAGAACGAGTCCACTAAGGCGACGATCGGGCAGAG 584
|||||||||||||||| |||||| ||| |||||||||| ||||||||||||||||| |||
Sbjct 538 AGCAGGGGCGTTCGCTCACTTGAGGGATAACGAGTCCATTAAGGCGACGATCGGGCCGAG 597
Query 585 CGCCACCGTGGATGTGTCGGTGGAGTGCGTGGGAATGTTGGAACGGTTGATGCTGGCGCA 644
| | ||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||
Sbjct 598 CACTACCGTGGATGTGTCGGTTGAGTGTGTTGGAATGTTGGAACGGTTGATGGTGGCGCA 657
Query 645 GGCTCAGGAATGTGTCTTTGAAAATACCATTGCTAAAGGAAGCACTCCTGGTGTTTGTGC 704
||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 658 GGCGCAGGAATGTGTCTTTGAAAATACCATTGCTAAAGGAAGTACTCCTGGTGTCTCTGC 717
Query 705 TAAAATTGCTAGGCAGGTTGGCATATATTATGAGGAAGCTTTAGCTGCGCTAATCACTTC 764
|||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |||
Sbjct 718 TAAAATTGCTAGGCAGGTTGGCATATTTTATGAGGAGGCTTTATCTGCGCTAATCATTTC 777
Query 765 GCCATTGAAGGATCATTTCGACAAAGGCTGGATTTCTCATGTGCAGCTCAAAGCAGCACT 824
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 778 GCCATTGAAGGATCATTTCGACAAAGGCTGGATTTCTCATGTGCAGCTGAAAGCAGCACT 837
Query 825 CTTCTATAGTGAAGCTTGCTTTAGGTATGGAAAAGAGTTGCACGAGAAAGAGGAAATTGC 884
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 838 CTTCTATGGTGAAGCTTGCTTTAGATATGGAAAAGAGTTGCACGAGAAAGAGGAAATTGC 897
Query 885 AGAAGAAATCGCACGGCTGAGGAGCGGAGCCAGTCGTTTGGCAGAAGCAAAGAAGTCTTC 944
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 898 AGAAGAAATTGCACGGCTGAGGAGTGGAGCCAGCCGTTTGGCAGAAGCAAAGAAGTCTTC 957
Query 945 AAGGGGAGCTCCTGCTCAGCTTATAGAAGCGATGAACACACTAGAATCGAGCATTAATGC 1004
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 958 AAGGGGAGCTCCTGCTCAGCTTATAGAAGCGATGAACACACTAGAGTCTAGCATTAATGG 1017
Query 1005 CAATTTGGATAGGGCTGTCAAGGAAAACGACAGAGTGTACCTCATGAGAGTTCCTTCTCC 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 CAATTTGGATAGGGCTGTCAAGGAAAACGACAGAGTGTACCTCATGAGAGTTCCTTCTCC 1077
Query 1065 TTCTTCTTTGTCTCCACTTCCCACCTTCTCAATGGTTAAGCCAATGAACATGACTGAGAT 1124
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1078 TTCTTCTTTGTCTCCACTTCCCGCCTTCTCAATGGTTAAGCCAATGAACATGACTGATAT 1137
Query 1125 ATTGGATGCAAGCAAGGAAAAGATGTTTGCAATCCTTGTTCCAGACAGCAGTGCAAAGGC 1184
|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 1138 TTTGGATGCAAGCAAGGAAAAAATGTTTTCAATCCTTGTTCCAGACAGCAGTGCAAAGGC 1197
Query 1185 TCTCTCTAGATACACTGAGATGGTCGATGATGTAATTAGAACTCAGGCGGAGAGATTACA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCTCTCTAGATACACTGAGATGGTCGATGATGTAATTAGAACTCAGGCGGAGAGATTACA 1257
Query 1245 GCAAGCTAGTGAACTAACTCGAGTTAGGCTCAAAGAGATGGATCTTCCAGATTCTATTCT 1304
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 GCAAGCTAGCGAACTAACTCGAGTTAGGCTCAAAGAGATGGATCTTCCAGATTCTATTCT 1317
Query 1305 TGCTGTGGATGGTAATTCAGCTCTTCCTGTTGATCTTAAAGAAGATGTAGAAGCTGTTCA 1364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CGCTGTGGATGGTAATTCAGCTCTTCCTGTTGATCTTAAAGAAGATGTAGAAGCTGTTCA 1377
Query 1365 GATCAGTGGTGGTCCAGCTGGCTTGGAAGCTGAACTGCAGCAACTTCGAGATTTGAAGAG 1424
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1378 GATCAGTGGTGGTCCAGCTGGCTTGGAAGCTGAACTGCAGCAACTTAGAGATTTGAAGAG 1437
Query 1425 GGTTAATCAGGAACTGTTGGTGCACACCGAAGAGCTTTTGCAGAAAGAAGCAACTGAAGA 1484
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1438 GGTTAATCAGGAACTGTTGGTGCACACTGAAGAGCTTTTGCAGAAAGAAGCAACTGAAGA 1497
Query 1485 CTCTCAGTTCAGAAGTCAATTTGGGACTCGGTGGACTAGGCCTCAATCTAGCACACTGAC 1544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TTCTCAGTTCAGAAGTCAATTTGGGACTCGGTGGACTAGGCCTCAATCTAGCACACTGAC 1557
Query 1545 AAAGAACTTGCAGGATAGGCTAAATCGGTTTGCAGCCAATTTGAAACAAGCTGGAGAAAG 1604
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1558 AAAGAACTTGCAGGATAGGCTAAATCGGTTTGCAGCCAATTTGAAACAAGCTGGCGAAAG 1617
Query 1605 TGATGTGAAGATTGAGCGATCAGTGAGAGATAATTCCGCCCTCATGTCTATTCTTGATCG 1664
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1618 TGATGTTAAGATTGAGCGATCAGTGAGAGATAACTCCGCCCTCATGTCTATTCTTGATCG 1677
Query 1665 ACGGCCAATAGAGTCTGCTGTCCCAACTCTAGCTAGGCCAATAATGTCTCTGGACGCAAC 1724
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1678 ACGGCCGATAGAGTCTGCTGTCCCAACTCTTGCTAGGCCAATAATGTCTCTGGACGCAAC 1737
Query 1725 AGAGGATGCAATTGTGGGAACTCTGAAGCAGAGTCTGAGGCAACTGGAAAATCTTGGTGC 1784
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1738 AGAGGATGCTATTGTGGGAACTTTGAAGCAGAGTCTGAGGCAACTGGAAAATCTTGGTGC 1797
Query 1785 TCAGCGGGCTGGTCTTGAAGACATGCTCAAAGAGATGAAAAGAAAAGATGACATACTGCC 1844
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1798 TCAGCGGGCAGGTCTTGAAGACATGCTCAAAGAGATGAAGAGAAAGGATGACATACTGCC 1857
Query 1845 TAAGCTGATGACAATTACAGGCTCCTATGAAGATATGTTCAGGAAAGAGATATCCAAGTA 1904
||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1858 AAAGCTGATGACCATAACAGGCTCCTATGAAGATATGTTCAGGAAAGAGATATCAAAGTA 1917
Query 1905 TGATCACATTTGTGAAGATATTTCCCAAAACATTGAAGTTCAAGAACAATTATTGATGCA 1964
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 TGACCACATTTGTGAAGATATTTCCCAAAACATTGAAGTTCAAGAACAATTATTGATGCA 1977
Query 1965 AATTCAGGCTCAAAATGAAGAGTTTTCAACTCTTTTCAATCTTGAAGATTATAAAGCATC 2024
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1978 AATTCAGGCTCAAAATGAAGAGTTTTCAACTATTTTCAATCTTGAAGATTATAAAGCATC 2037
Query 2025 CAAGGAGAAGTGCTACAAGCAGATTCAAGCTGCTATAATGAAGTATCGAGAGATCAAGGA 2084
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2038 CAAGGAGAAGTGCTACAAGCAGATTCAAGCTGCAATAATGAAGTATCGAGAGATCAAGGA 2097
Query 2085 GAACATCAATGAGGGCCTGAAGTTCTACGTCACTCTCCAAGATGCAATCACGAATGTGAA 2144
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2098 GAACATCAATGAGGGCCTGAAGTTCTATGTCACTCTCCAAGATGCAATCACGAATGTGAA 2157
Query 2145 GCAGCAGTGCAGTGATTTTGTAATGACAAGGAGTATCCAGTGCCGAGAAATGATTGAAGA 2204
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 2158 GCAGCAGTGCAGTGATTTTGTGATGACAAGGAGTATCCAGTGCCGAGATATGATTGAAGA 2217
Query 2205 TGTGCAACGACAGATGTCTGGTCTGAGTTTTCAGGATCATAGAAGCTCCGGCCCATACCC 2264
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2218 TGTGCAACGACAGATGTCTGGTTTGAGTTTTCAGGATCATAGAAGCTCCGGCCCATACCC 2277
Query 2265 ATCTGTGCATCAACCAGCTGCTTCAAGTCCGCCTCCTCCACCAGAAACTCAGAATCCATC 2324
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 ATCTGTGCATCAACCAACGGCTTCAAGTCCGCCTCCTCCACCAGAAACTCAGAATCCATC 2337
Query 2325 TCATCCTCACCCACATGCACCATACTATAGACCGCCTGAGCAAATGTCAAGGCCTGGCTA 2384
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2338 TCATCCTCACCCACATGCACCATACTATAGACCGCCTGAGCAGATGTCAAGGCCTGGCTA 2397
Query 2385 CACTATCCCACCCTACGGTCCACCTCCCCCGTACCATACTCCTCATGGCCAG-C-C-ACA 2441
| |||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||
Sbjct 2398 CTCTATCCCACCCTACGGTCCACCTCCCCCATACCATACTCCTCATGGCCAGGCGCCACA 2457
Query 2442 ACCATACCCTCCTCAGGCCCAGCAACAGCCTCATCCATCATGGCAACAAGGCTCGTACTA 2501
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 2458 ACCATACCCTCCTCAGGCACAGCAACAGCCTCATCCATCATGGCAACAAGGCTCTTACTA 2517
Query 2502 TGATCCGCAGGGACAACAGCCTCGGCCTCCTTATCCCGGCCAGAGCCCATACCCACCTCC 2561
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2518 TGATCCGCAGGGACAGCAGCCTCGGCCTCCTTATCCCGGCCAGAGCCCATACCAACCTCC 2577
Query 2562 TCACCAAGGTGGCGGATACTACAGGCAATGAGTTACCTTGGGAGCAATAAA-T------- 2613
|||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 2578 TCACCAAGGTGGAGGATACTACAGGCAATGAGTTACTTTGGGAGCAATAAAATTCTGGTG 2637
Query 2614 --AT-T-------GTTGTGTTTACTGTGAGTACTTGATGGGCGTGTATCTCTCTGACATG 2663
|| | ||||||||| |||||||||||||||| | || ||||||| |||||||
Sbjct 2638 TTATATATCTATTGTTGTGTTTCCTGTGAGTACTTGATGTGTGTCTATCTCTTTGACATG 2697
Query 2664 TTTCT-TGAATGAAATTAGAATCT-TG-TTTAATAGTGACTCAAATTCTTTATTCAAAGT 2720
||||| | | ||||||| |||| | || ||| ||||||||||||||||||||||||||||
Sbjct 2698 TTTCTGTCA-TGAAATT-GAATATCTGGTTTGATAGTGACTCAAATTCTTTATTCAAAGT 2755
Query 2721 AGAGACGATGTGATGGATGAAAGTTGTGTAAAGCACACTATTCATATATAG 2771
|||| ||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2756 AGAGCCGATGTGATGGATGAGAGTTGTGTAAAGCACGTTATTCATATATAG 2806
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137658091592
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5