BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471712 Length=1440 Score E Sequences producing significant alignments: (Bits) Value AT1G15200.3 | Symbols: | protein-protein interaction regulator... 1349 0.0 > AT1G15200.3 | Symbols: | protein-protein interaction regulator family protein | chr1:5228300-5231184 REVERSE LENGTH=1757 Length=1757 Score = 1349 bits (730), Expect = 0.0 Identities = 794/826 (96%), Gaps = 0/826 (0%) Strand=Plus/Plus Query 1 CTTCTTCTAAGGGTTTCGAGCGAAATTTCTGAGCAGCGGCGACGATGGGAGACACCGCCT 60 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| Sbjct 124 CTTCTTCTAAGGGTTTCGAGCAAAATTTCTGAGCAACGGCGACGATGGGAGACACCGCCT 183 Query 61 TAGAGAAGACAGCCGAAGAGCTACGGCATGAGATCGATGAGCTTCACCGTCAACAGCGCG 120 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 184 TGGAGAAGACAGCGGAAGAGCTACGGCATGAGATCGATGAGCTTCACCGTCAACAGCGTG 243 Query 121 AGATTACGGAGAGGCTTCGTGACCCTCGTGGACTCCGCCGTGGAGGCTTCTCAAGCGTCG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 244 AGATTACGGAGAGGCTTCGTGACCCTCGTGGACTCCGCCGTGGAGGCTTCTCAAACGTCG 303 Query 181 TTCCTCGCAACCAAGGCCGTAGAGGCTTTCCTCGACCTGCGGAGAGGAATGACGCAGAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 304 CTCCTCGCAACCAAGGCCGTAGAGGCTTTCCTCGACCTGCGGAGAGGAATGACGTAGAAG 363 Query 241 ACGAGCCTCCTGCTAAACGGAGATTGTCTTCCGCCGTTGTTAAGGTCGACGGTGAAGATG 300 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 364 ACGAGCCTCCTGCTAAAAGGAGATTGTCTTCCGCCGTTGTTAAGGTCGACGGTGAAGATG 423 Query 301 TTAGTAAGGATGGAGAATTGCCAGTTGATGGCAATGGAACCCAGGTTTTAGTTGGTGAGA 360 ||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||| Sbjct 424 TTAGTAAAGATGGAGAATTTCCAGTTGATGGTAATGGAACCCAGGTTAAAGTTGGTGAGA 483 Query 361 ACGGGACTTCTGATCAAAGTGACAAGAAGCTATCTGGTCATCATCGTGGAAGTTGGTCCC 420 | |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 484 ATGGGACTTCTGATCAAAGTGACAAGAAGCAATCTGGTCTTCATCGTGGAAGTTGGTCCC 543 Query 421 AGAGAGATGCAGAACAACGAGGGACCAAGAAGGGTTACGAAGCTTTTGCATTGCCGGAGC 480 |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct 544 AGAGAGATGCAGAACAACGACGGACCAATAAGCGTTACGAAGCTTTTGCATTGCCGGAGC 603 Query 481 CTTCACCAAGGGTTTTACCTAAGAATGAGGATCCTAAACTGGTTAATAGGAACAGAAGAA 540 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 604 CTGCACCAAGGGTTTTACCTAAGAATGAGGATCCTAAACTGGTTAATAGGAACAGAAGAA 663 Query 541 TGCTGGGGAATCTTCTAGGAACTTTGGAGAAGTTCAGAAAAGAAGATAAGCAGCGTTCTG 600 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 664 TGCTAGGGAATCTTCTAGGGACTTTGGAGAAGTTCAGAAAAGAAGATAAGCAGCGTTCTG 723 Query 601 GAACAGATGCATACGCCCGACGGACTGCAACTCTACAAAGGGCTGAGGAAAAGGCTCGTG 660 |||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||| Sbjct 724 GAACAGATGCATACGCCCGACGAACTGCAGCTCTACAAAGGGCGGAGGAAAAGGCTCGTG 783 Query 661 AAGAAAGTGAACGACTGAGGTTGCAGGAGCGTGAAAATCTGACTGAAAAGAGGAGAAGAG 720 |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 784 AAGAAAGTGAACGACTGAGGCTGCAGGAGCGTGAAAATTTGACTGAAAAGAGGAGAAGAG 843 Query 721 ATCTTACTCTTCGAGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAGTTGGAATTGCTTT 780 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 844 ATCTTACTCTTCGGGCTCGTGTTGCTGCTAAAGCAGAACAAAAGAAATTGGAATTGCTTT 903 Query 781 TCCTTCAGTGGAGTGAGCACCAAAAGAAACTTACCAATTTTATAAG 826 ||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 904 TCCTTCAATGGAGTGAGCACCAAAAGAAACTTAGCAATTTTATAAG 949 Score = 902 bits (488), Expect = 0.0 Identities = 586/630 (93%), Gaps = 19/630 (3%) Strand=Plus/Plus Query 821 TATAAGGACTAAAGCAGAGCCACGGATATACTATGCACTAGTGAAACCTTTGGAAGAAGA 880 ||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| Sbjct 1086 TAT-AGGACTAAAGCAGAGCCACGGATATACTATGCACCAGTGAAGCCTTTGGAAGAAGA 1144 Query 881 TACAAGTGAGGTAGAGCAACAGAAAGAGCAGACATTCTTAGAATGGAAGGCGGCAAGGAG 940 ||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 1145 TACAAGTGAGGTAGAACAACAGAAAGAGCGGACATTCTTAGAATGGAAGGCAGCAAGGAG 1204 Query 941 ACAAGAAGTGAGTGAGTATCAAAAGGAGATAGAAGAGCAGTGTCTGGGAAATGTTGAGAA 1000 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1205 ACAAGAAGTGAGTGAGTATCAAAAGGAGATAGAAGAGCAGTGTCTGGGTAATGTTGAGAA 1264 Query 1001 AGAGCTGGAGAGGTGGCAAAACGCAAGGAAGGCGAGGAAAGCAAACAACGAGGGTATTAA 1060 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 1265 AGAGCTGGAGAGGTGGCAAAACGCAAGGAAGGCAAGGAAAGCAAACAACGAGGGTATGAA 1324 Query 1061 TTTGCAGGAAACAATGGACAAGGAATTAGAGACACATAGGATGGAGCACGGGCCAAAGAA 1120 |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1325 TTTGCAGGAAACGATGGACAAGGAATTAGAGACTCATAGGATGGAGCATGGGCCAAAGAA 1384 Query 1121 GAGAAAGATTCCAGGAGGAG-A-T-G-A-A-GA-G--GAAGAAGATGAAGTGGAGGATAT 1171 ||||||||| || ||||||| | | | | | || | |||||||||||||| |||||||| Sbjct 1385 GAGAAAGATACCTGGAGGAGGAGTAGGAGATGAAGATGAAGAAGATGAAGTAGAGGATAT 1444 Query 1172 CAATGGTGGAGAGGATGAAATGATAATGGATGATTTGCTAGAGGAGGGAGGAGATGGAAA 1231 |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 1445 CAATGGTGGAGAGGATGAAATGATAATGGATGATTTACTGGAGGAGGGAGGAGATGGAAC 1504 Query 1232 CATCAAGGAGGAAGTGGCTACTGATACAGTAAAAGCAGAAGCAGTGGAGGAAGACATTAA 1291 |||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1505 CATCAAGGAGGAAGTGGCAACTGATACAGTTAAAGCAGAAGCAGTGGAGGAAGATATTAA 1564 Query 1292 ACATGAGGTTGTCTAAGTCATATAGTTTGTTTGTTCTTGAAATGTGGTGGAGTTACTTTG 1351 |||||||||| |||||||||||||||||||||||||||||||| |||||||||| | | Sbjct 1565 ACATGAGGTTCTCTAAGTCATATAGTTTGTTTGTTCTTGAAATTTGGTGGAGTT--T--G 1620 Query 1352 CGAGTTAGAAAACTGGTCAAATCTATTTTGGAGCTGT-GTAAGGTGGAATTTTATGGTAA 1410 |||||||||||||||||||||||||||||||||| || |||| ||| |||| ||||||| Sbjct 1621 CGAGTTAGAAAACTGGTCAAATCTATTTTGGAGC-GTTGTAACGTG-AATT--ATGGTAA 1676 Query 1411 TTTGTAGGAAAGATTTGCCTTTCTGCTATA 1440 ||| |||||||||||||||||| ||||||| Sbjct 1677 TTTCTAGGAAAGATTTGCCTTTGTGCTATA 1706 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70983570630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5