BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471741
Length=2248
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15410.1 | Symbols: | aspartate-glutamate racemase family |... 3149 0.0
AT1G15415.1 | Symbols: | The protein encoded by this gene was ... 226 8e-58
> AT1G15410.1 | Symbols: | aspartate-glutamate racemase family
| chr1:5298324-5300927 FORWARD LENGTH=2306
Length=2306
Score = 3149 bits (1705), Expect = 0.0
Identities = 2120/2308 (92%), Gaps = 77/2308 (3%)
Strand=Plus/Plus
Query 1 GATCCCTCATTTCAGGTAAAAACGTCGTCTGGGTTC-TTCCCATTTTCCCGAATGTGGAA 59
|||||| |||||||||||||||| ||||||||| || || ||||||| |||||||||||
Sbjct 2 GATCCCACATTTCAGGTAAAAACATCGTCTGGGCTCTTTGCCATTTTAGCGAATGTGGAA 61
Query 60 AGAAAGGGAGGAGCTCTTCTCAGACCTTGAAGCCTATTCCTTTATTGAAACGCTTCTTGT 119
|| ||||||||||||||||||||||| ||| ||||| ||||| || || |||||| ||
Sbjct 62 AG--TGGGAGGAGCTCTTCTCAGACCTT-AAGACTATTGCTTTAGTGGAATGCTTCTCGT 118
Query 120 AGTTGTATAAGTGAGACAAAGAAACTCCATTCGTATCTATCTA-T--TCTAAGCTGTTTA 176
| |||||||||||| |||||||||||||||||||||||||| | |||||| |||||
Sbjct 119 AAATGTATAAGTGAG-GAAAGAAACTCCATTCGTATCTATCTACTACCCTAAGCCGTTTA 177
Query 177 TGCATTTTCTGTCCATCAGAAGATCAACACCTGTTTCTGGAGGATTCCATTGA-TTGAGG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 178 TGCATTTTCTGTCCATCAGAAGATCAACACCTGTTTCTGGAGGATTCCATTGATTTAAGG 237
Query 236 GATTAGATGGGTGATGGACCATGTGGGATTCAGTAGAGGACAAGAACACAAAGGAATCCA 295
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 GATTAGATGGATGATGGACCATGTGGGATTCAGTAGATGACAAGAACACAAAGGAATCCA 297
Query 296 CCAAACAGAGACAACCCACATGTTGCAGGAAAATATATATAA-AATATCACAAGAAACGG 354
|| |||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||
Sbjct 298 CCTAACAGAGACAACCCACATGTTGCAGG-AAATACATATAATAATATCACAAGAAACGG 356
Query 355 AAAAAGAACCAGACAGGGACTCATCTTCTTGAATTTAACGCCTTACATTGTGGTATCTTC 414
|||||||| ||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 357 AAAAAGAAGCAGACAGAGACACCTCTTCTTGAATTTAACGCCTTACATTGTGGTATCTTC 416
Query 415 CATCTTCTTTACTGCCTCTTGGTGAAATCCAGTGAAAATATGATTATTTATCTGAGGCGA 474
|||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||
Sbjct 417 CATCTTCTTTACTGCCTCATGGTGAAATCCAGTGCATATATGATTATTTATCTGAGGCGA 476
Query 475 CGATTCCTCACTTCAAC-T--T--GACTCCTACTGGTCCAGCTTTCATAGGATCGGTTGA 529
||||||| |||||| | | | |||| ||||||||||| ||||||| |||||||||||
Sbjct 477 AGATTCCTTACTTCATCTTGATGCGACTACTACTGGTCCAACTTTCATTGGATCGGTTGA 536
Query 530 TTTCAGGCCGTTG---TT-C----TGGTGTCCCACCTGTTCTTTTAGTACTG-TTTCCTT 580
||| ||||||||| || | |||||||||||||||||||||||||||| |||||||
Sbjct 537 TTTGAGGCCGTTGTTCTTACATTTTGGTGTCCCACCTGTTCTTTTAGTACTGTTTTCCTT 596
Query 581 TTTG--T-T-----T-------C-T---GGCAATCAGTCATCCTGCTCAATAACTTACAA 621
|||| | | | | | |||||||||||||||| ||||||||| |||||
Sbjct 597 TTTGTTTCTGGCAATCAGAAAACATAAAGGCAATCAGTCATCCTTCTCAATAACATACAA 656
Query 622 AGATTTTGTTTTCAAGAGAATCTTCTATAGTAAGCTAGACGTTTACTTCTGTCTTATTAA 681
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 AGATTTGGTTTTCAAGAGAATCTTCTATAGAAAGCTAGACGTTTACTTCTGTCTTATTAA 716
Query 682 GGAGAAGTACTGG--------------T-TTGGCTGGTTTGGGAATTGCATCCAAATTTC 726
||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 717 GGAGAAGTACTGGTTCTTTCATTTATATCTTGGCTGGTTTGGGAATTGCATCCAAATTTC 776
Query 727 TTGCAGTGTGGGTTTCACCCAGGAGCTGCAGAAAAGTGAGTTCATGTTAGAGATTGTAGG 786
||||| |||||| ||| || ||||||||||||||||||||| |||||||||||||||||
Sbjct 777 TTGCA--GTGGGTGTCAGCCTGGAGCTGCAGAAAAGTGAGTTGATGTTAGAGATTGTAGG 834
Query 787 ATCTTACTCCTAAAAGCTAGAAAAGGTCCTTGCGACTTTATAACTTAG-AAGTTGCTTCC 845
|||||||||| |||||| ||||||||||||||||||| | |||||| | |||||| ||||
Sbjct 835 ATCTTACTCCAAAAAGCCAGAAAAGGTCCTTGCGACTCTCTAACTT-GAAAGTTGTTTCC 893
Query 846 TTTTTCTGAATCTCAGCTGGATTTGGAACTTTGGTGTCAAGATTTGGAGTTTGAACTCTG 905
||||| ||||||| |||||| ||||||| ||||||||||||||||||| |||||| ||||
Sbjct 894 TTTTTTTGAATCTGAGCTGGTTTTGGAATTTTGGTGTCAAGATTTGGAATTTGAA-TCTG 952
Query 906 AAGTAAGATTCAGG-TTAGTGGGGGAGGGAACAAGTTGGAAACTTTTGCTAGTTTTGTCA 964
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 953 TAGTAAGATTCAGGTTTAGTGGGGGAGGGAACAAGTTGGAAGCTTTTGCTAGTTTTGTCA 1012
Query 965 AAGGTGTCTCTGAAGTACTAACTATCAGAAAGCATTTTCAGGACAGAAGCTTGGTGATGT 1024
|||||||| || ||||||||||||||||||| |||||||| | |||||||||||||||||
Sbjct 1013 AAGGTGTCACTAAAGTACTAACTATCAGAAAACATTTTCA-GCCAGAAGCTTGGTGATGT 1071
Query 1025 ATCTTCAGATTTTCAACAACCCATCTCATGGCTTAGCTCATGTAAGCTACTCTAGTCGGG 1084
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1072 ATCTTCAGATTTTCAACAACCCATCTCATGGCTTAGCTCATTTATGCTACTCTAGTCGGG 1131
Query 1085 TTTCGTGTAAGGTAAGACTGAGTCGTGTCCTTGCCATGCCACCGTCTTCAATCCTCTTGC 1144
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1132 TTTCGTGTAGGGTAAGACTGAGTCGTGTCCTTGCCATGCCACCGTCTTCAGTCCTCTTGC 1191
Query 1145 ATATGGACGAAAGCAATGATCTTCCCAAGCCCAAGAAGGGTTTTTGTCTAAGTGAAGATT 1204
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1192 ATATGGACGAAAGCAATGATCTTCCCAAGCCCAAGAAGGGTTTTTGTCTGAGTGAAGATT 1251
Query 1205 CGAGAAACAGTTTAAACAGTCTTTCTGCAGATTCTTTGCTTAGGCAGGCTAACACAGTGG 1264
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1252 CGAGAAACAGTTTAAACAGTCTTCCTGCAGATTCTTTGCTTAGGCAGGCCAACACAGTGG 1311
Query 1265 GGATAATTGGAGGCGTTTCAACTGATTCCACTCTGAAATTTGTGAAGAAACTCGTGGATT 1324
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 GGATTATCGGAGGCGTTTCAACTGATTCCACTCTGAAATTTGTGAAGAAACTCGTGGATT 1371
Query 1325 GGAGCTCAAAAGATGGTAAAAGCTCGTTACCCTTTGTGCTTTGCTCGGATCCTGCACTCA 1384
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1372 GGAGCTCAAATGATGGTAAAAGCTCGTTACCTTTTGTGCTTTGCTCGGATCCTGCTCTCA 1431
Query 1385 ACAAGGAGCTTTTCTTATACGAGGAAAACTCGTATCCTTCTCTTTACCATAGAGCAGAGA 1444
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1432 ACAAGGAGCTTCTCTTATACGAGGAAAACTCGTATCCTTCTCTTTACCATAGAGAAGAGA 1491
Query 1445 GTACTCCGGTGGATCCAAAGCTAATTGTGGGGAATCTAAGGAATAAGAGGAGATATCTTG 1504
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1492 GTACTCCGGTTGATCCAAAGCTAATTGTGGAAAATCTAAGGAATAAGAGGAGATATCTTG 1551
Query 1505 AGAAATGTGGAGCTAAATTAATCTTAATGCCCTGTCATATTGCACATATATGGTATGAAG 1564
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 AGAGGTGTGGAGCTAAATTAATCTTAATGCCCTGTCATATTGCACATATATGGTATGAAG 1611
Query 1565 AGGTTTGTGAAGGGAGTTCAGTTCCTCTGCTTCACATGGGTGAATGCATTGCTAAAGAGC 1624
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1612 AGGTATGTGAAGGGAGTTTAGTTCCTCTGCTTCACATGGGTGAATGCATTGCTAAAGAAC 1671
Query 1625 TGCAAGAGGCAAAAATGAAGCCCCTTGAAGCTGGGAATCCTCTGCGTGTGGGTGTGATGG 1684
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1672 TGCAAGAGGCAAAAATGAAGCCCCTTGAAGCTGGGAATCCTCTGCGTGTAGGTGTGATGG 1731
Query 1685 CCACTAGTGCCACGCTATCTGCAGGGTTCTACCAGGAGAAACTTCAAAGCAATGGATTTG 1744
||||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1732 CCACTAGCGCCACGTTATCAGCAGGGTTCTACCAGGAGAAACTCCAAAGCAATGGATTTG 1791
Query 1745 AGGCAGTGCTTCCAGACAAGGCGACAATGGAGCACACGGTAATCCCATCCATAGAAGCAA 1804
|||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1792 AGGCTGTGCTTCCAGACAAGGCAACAATGGAGCACACGGTGATCCCATCCATAGAAGCAA 1851
Query 1805 TGAAGAGAGAAGACATGGAAGGAGCACGGAACCTTCTGAGGATAGCGTTGCAGGTATTGC 1864
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1852 TGAAGAGAAAAGACATGGAAGGAGCACGGAACCTTCTGAGGATAGCGTTGCAGGTACTGC 1911
Query 1865 TAGTGCAGGCGGTAAACGTGGTGATGCTCGGGTCAGATGAGATGCGGGACCTCTTGCCAG 1924
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1912 TAGTGCAGGCGGTAAACGTGGTGATGCTCGGGTCAGATGAGATGCGGGACCTCTTGCCTG 1971
Query 1925 GGGATGAGCCTCTGCTAAAGAAGTGTGTTGATCCAATGGATGCACTCGCAAGGTCTGCCA 1984
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1972 GGGATGATCCTCTGCTAAAGAAGTGTGTTGATCCAATGGATGCACTAGCAAGGTCTGCCA 2031
Query 1985 TCAAATGGGCAGAGAATCA-ATGCTCTTAAGGGAGTTTGTGTGTATGTGTGTATATATGT 2043
||||||||||||||||| | |||||||||||||||||||||||| |||| ||| | |||
Sbjct 2032 TCAAATGGGCAGAGAAT-AGATGCTCTTAAGGGAGTTTGTGTGT--GTGTATAT-T-TGT 2086
Query 2044 GAATAGAAATATAGCTCGGCTGGGGTGAAATTACCAAAGTGTAAACCGGCGTTTGATAGA 2103
|||||||||||||||||||||||| |||||||| ||| ||||||||| | ||||||||||
Sbjct 2087 GAATAGAAATATAGCTCGGCTGGGATGAAATTATCAA-GTGTAAACCAGTGTTTGATAGA 2145
Query 2104 AAAATCAAAACCAAAGTCTCAACATGTGTTGGTCAACACAAGTGTGAACATGTCTAAAGC 2163
||| ||||||||||||||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 2146 AAACTCAAAACCAAAGTCTCAACATGTATTGGTCAAAACAAGTGTGAACATCTCCAAAGC 2205
Query 2164 aaaaaaaaGTTTGAACATGAGTTGGCTTGGATGCAATGTGTAATATCCCTTATTGTTA-- 2221
|||||| || |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2206 CAAAAAA-GTCTGAACATGTGTTGGCTTGGATGCAATGTGTAATATCCCTTATTATTAAT 2264
Query 2222 -CAGACATTTATTAGTGGAATAAAAAGA 2248
|||||| ||||||||||||||||||||
Sbjct 2265 ACAGACAATTATTAGTGGAATAAAAAGA 2292
> AT1G15415.1 | Symbols: | The protein encoded by this gene was
identified as a part of pollen proteome by mass spec analysis.
It has weak homology to LEA (late embryo abundant) proteins.
Encodes protein phosphatase 2A (PP2A) B'gamma subunit.
Targeted to nucleus and cytosol. | chr1:5300742-5301412
REVERSE LENGTH=480
Length=480
Score = 226 bits (122), Expect = 8e-58
Identities = 156/172 (91%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 2080 AAGTGTAAACCGGCGTTTGATAGAAAAATCAAAACCAAAGTCTCAACATGTGTTGGTCAA 2139
||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 479 AAGTGTAAACCAGTGTTTGATAGAAAACTCAAAACCAAAGTCTCAACATGTATTGGTCAA 420
Query 2140 CACAAGTGTGAACATGTCTAAAGCaaaaaaaaGTTTGAACATGAGTTGGCTTGGATGCAA 2199
|||||||||||||| || ||||| |||||||| |||||||| ||||||||||||||||
Sbjct 419 AACAAGTGTGAACATCTCCAAAGC-CAAAAAAGTCTGAACATGTGTTGGCTTGGATGCAA 361
Query 2200 TGTGTAATATCCCTTATTGTTA---CAGACATTTATTAGTGGAATAAAAAGA 2248
|||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 360 TGTGTAATATCCCTTATTATTAATACAGACAATTATTAGTGGAATAAAAAGA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111545610990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5