BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471748 Length=1404 Score E Sequences producing significant alignments: (Bits) Value AT1G15470.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2122 0.0 > AT1G15470.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:5315507-5317863 FORWARD LENGTH=1416 Length=1416 Score = 2122 bits (1149), Expect = 0.0 Identities = 1323/1402 (94%), Gaps = 31/1402 (2%) Strand=Plus/Plus Query 1 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAG-------A--AAA--G 49 |||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 4 ACCATCGTCGTCTCCGCGAGTTCTTCTCTGCGTTTAAGCCATAGATAACAAACCAAACTA 63 Query 50 aaaaaaaaaaGTGTCTCCTTTTATCATTCCCTCTTTTCTCTT-TAATAGGTGTGATCCTC 108 |||||||||||| ||||||||||||||||| ||| ||| ||| | ||||||||||||||| Sbjct 64 AAAAAAAAAAGTTTCTCCTTTTATCATTCCTTCTCTTCCCTTGT-ATAGGTGTGATCCTC 122 Query 109 TTCAAGGGGATTTCTCTGGCTGGTCATACATTCGCACCGATCAAACTCGGATTGGTCTTT 168 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 123 TTCAAGGGGATTTCTCTGGCGGGTCATACATTCGCACCGATCAAAGTCGGATTGGTCTTT 182 Query 169 CTTAACGCAATCCTGTCGCGATTCAAAAACGA-TTCTGGGTTTGTTAGTGAATAGACGAG 227 |||||||||||| || | ||||||||||| | ||||||||||||||||||||||| || Sbjct 183 CTTAACGCAATCTTGACCCGATTCAAAAA--ATTTCTGGGTTTGTTAGTGAATAGATAAG 240 Query 228 aaaaaaaGATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 287 || | || |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 AAGATAA-ATGGGAGCTCCGTTAGTGTGCCACGGGCATTCTCGTCCCGTCGTCGATGTGG 299 Query 288 CTTATAGTCCGGTGACTCCAGATGGGTTCTTCCTCATTAGCGCCAGCAAAGATTCGAATC 347 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 300 CTTATAGTCCGGTGACTCCAGATGGGTTCTTTCTCATTAGCGCCAGCAAAGATTCGAATC 359 Query 348 CGATGTTGAGGAATGGGGAGACTGGTGACTGGATTGGAACTTTTGAAGGACATAAGGGAG 407 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 360 CGATGTTGAGGAATGGAGAGACTGGTGACTGGATTGGGACTTTTGAAGGACATAAGGGAG 419 Query 408 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCAGATT 467 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 420 CAGTTTGGAGTTGCAGCCTTGATAAAAATGCTATTCGTGCTGCCTCAGCTTCTGCTGATT 479 Query 468 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TCACTGCGAAAATATGGAATGCATTGACAGGAGATGAATTGCACTCCTTTGAACACAAGC 539 Query 528 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGCTTACTCACTGGTGGAATGG 587 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 540 ACATTGTTCGTGCATGTGCCTTTTCTGAGGACACTCACCGTTTACTCACTGGTGGAATGG 599 Query 588 AGAAAATTCTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGAA 647 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 600 AGAAAATACTTCGGATATTCGATTTGAATCGGCCAGACGCACCTCCAAAAGAAGTCGGGA 659 Query 648 ATTCCGCTGGTTCAATTAGAACCGTTGAATGGCTTCATAGTGATAATACAATCTTAAGCT 707 ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 660 ATTCCCCTGGTTCAATTAGAACTGTCGAATGGCTTCATAGTGATAATACAATCTTAAGCT 719 Query 708 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 CTTGCACAGATACCGGTGACATTAGGTTATGGGACATAAGAAGTGACAAGATTGTTCATA 779 Query 768 CATTAGAAACAAAATCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 827 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CATTAGAAACAAAGTCCCCAGTTACTAGTGCTGAAGTAAGTCAGGATGGGCGATACATCA 839 Query 828 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 887 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 840 CTACTGCTGATGGATCTAGTGTTAAGTTTTGGGACGCTAAAAATTTTGGATTGCTGAAGA 899 Query 888 GCTATGACATGCCTTGCAATGTTGAATCGGCATCTTTGGAACCGAAACACGGCAACACTT 947 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 900 GCTATGACATGCCTTGCAATGTTGAATCGGCATCGTTGGAACCGAAACACGGTAACACTT 959 Query 948 TCATTGCTGGAGGAGAAGATATGTGGGTGCATAGGTTTGATTTCCAGACTGGAGAGGAGA 1007 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 960 TCATTGCTGGAGGAGAAGATATGTGGGTGCACAGGTTTGATTTCCAGACTGGAGAAGAGA 1019 Query 1008 TTGGGTGTAACAAGGGTCACCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1067 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1020 TTGGGTGTAACAAGGGTCATCACGGGCCAGTGCACTGCGTGAGGTATGCGCCAGGAGGGG 1079 Query 1068 AATCATACACATCAGGCTCAGAAGACGGAACAGTCAGAATATGGGTGGTGGGTTCAGTGA 1127 | |||||||| |||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 1080 AGTCATACACCTCAGGCTCAGAAGACGGAACGGTCAGAATATGGGTGGTGGGTTCGGTAA 1139 Query 1128 ACCATCAC-GAGGAGAGCAATCCGAGCGGTCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1186 |||||| | ||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 1140 ACCATC-CTGAGGAGAGCAATCTAAGCGGCCACGTGAAGCTTGTGGCAGAGGAGGTTGTG 1198 Query 1187 CGTAAAGCGGAAAGTCTGCGTATCAATGAGAAAGCTGCAGAAGCTAAATGAAACATCATC 1246 |||||||| |||||||| ||||||| ||||||||| ||||||||||||||||||| |||| Sbjct 1199 CGTAAAGCTGAAAGTCTCCGTATCAGTGAGAAAGCCGCAGAAGCTAAATGAAACACCATC 1258 Query 1247 GTTAGCTTATGATATGGCATAGATTCATAGTTTGtttttttGCATCATTATAAGATGTGA 1306 ||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| Sbjct 1259 GTTAGCTTATGATATCACATAGATTCATAGTT-GTTTTT--GCATCATTATAAGATGTGA 1315 Query 1307 CAGAGGG-TTTTGCCTTTTAAAAGTCTCTCAAGACGGAATAAAACGAACATAAATAATAT 1365 || |||| ||||||||||||||||||||||| ||| |||||||||||| |||| | Sbjct 1316 CAAAGGGGTTTTGCCTTTTAAAAGTCTCTCA-GACCGAATAAAACGAA-ATAA-T----- 1367 Query 1366 CTTCAACTATATTTGAGTGAAT 1387 ||||||||||| |||||||||| Sbjct 1368 CTTCAACTATACTTGAGTGAAT 1389 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69176351010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5