BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471756 Length=1240 Score E Sequences producing significant alignments: (Bits) Value AT1G15550.1 | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-ox... 1857 0.0 > AT1G15550.1 | Symbols: GA4, ATGA3OX1, GA3OX1 | gibberellin 3-oxidase 1 | chr1:5344478-5346166 REVERSE LENGTH=1256 Length=1256 Score = 1857 bits (1005), Expect = 0.0 Identities = 1169/1247 (94%), Gaps = 15/1247 (1%) Strand=Plus/Plus Query 1 ATCACCAAACATCACACTTCTCATAAG-AAAAATACACAAACATCTATCAGATTTATAAA 59 ||||||||||| ||||||||||||||| ||||| |||||||||||||||| ||||| ||| Sbjct 1 ATCACCAAACACCACACTTCTCATAAGAAAAAAAACACAAACATCTATCAAATTTACAAA 60 Query 60 -TTTTTAAA--AA--CAAGATCAGCAAGATGCCTGCAATGTTAACAGATGTGTTTAGAGG 114 |||| ||| || || | |||||||||||||| ||||||||||||||||||||||| Sbjct 61 GTTTTAAAACTAATTAAAAAAGAGCAAGATGCCTGCTATGTTAACAGATGTGTTTAGAGG 120 Query 115 GCATCCCATTCACCTCCCACACTCTCACCA-ACCTGACTTCACTTCCCTTCGTGAGCTCC 173 |||||||||||||||||||||||||| || |||||||||||| || || || ||||||| Sbjct 121 CCATCCCATTCACCTCCCACACTCTCA-CATACCTGACTTCACATCTCTCCGGGAGCTCC 179 Query 174 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCGCCGCTGCTCCTTCTCCTC 233 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 180 CGGATTCTTACAAGTGGACCCCTAAAGACGATCTCCTCTTCTCCGCTGCTCCTTCTCCTC 239 Query 234 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTGGACCACCCGGACGCGGCCAACCAAA 293 |||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| Sbjct 240 CGGCCACCGGTGAAAACATCCCTCTCATCGACCTCGACCACCCGGACGCGACTAACCAAA 299 Query 294 TCGGCCATGCATGTAGAACTTGGGGTGCCTTCCAGATCGCAAACCACGGCGTGCCTTTGG 353 |||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 300 TCGGTCATGCATGTAGAACTTGGGGTGCCTTCCAAATCTCAAACCACGGCGTGCCTTTGG 359 Query 354 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGCCTCTTCGGGCTACCTGTCCAACGCA 413 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 360 GACTTCTCCAAGACATTGAGTTTCTCACCGGTAGTCTCTTCGGGCTACCTGTCCAACGCA 419 Query 414 AGCTTAAGGCGGCTCGGTCGGAGACAGGTGTCTCCGGTTATGGCGTCGCTCGTATCGCGT 473 |||||||| | |||||||||||||||||||| ||||| || ||||||||||||||||| | Sbjct 420 AGCTTAAGTCTGCTCGGTCGGAGACAGGTGTGTCCGGCTACGGCGTCGCTCGTATCGCAT 479 Query 474 CTTTCTTCAATAAGAAAATGTGGTCCGAAGGTTTCACCATCACTGGTTCCCCTCTCAACG 533 |||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 480 CTTTCTTCAATAAGCAAATGTGGTCCGAAGGTTTCACCATCACTGGCTCGCCTCTCAACG 539 Query 534 ATTTCCGTAAACTTTGGCCCCAACTTCACCTCAACTACTGCGACATCGTTGAAGAGTACG 593 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 540 ATTTCCGTAAACTTTGGCCCCAACATCACCTCAACTACTGCGATATCGTTGAAGAGTACG 599 Query 594 AGGAACAAATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAAATCACTTGGGG 653 ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 600 AGGAACATATGAAAAAGTTGGCATCGAAATTGATGTGGTTAGCACTAAATTCACTTGGGG 659 Query 654 TCAGCGAAGAGGACGTTGAATGGGCCAGTCTCAATTCAGATTTAAATTGGGCCCAAGCTG 713 |||||||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 660 TCAGCGAAGAAGACATTGAATGGGCCAGTCTCAGTTCAGATTTAAACTGGGCCCAAGCTG 719 Query 714 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCTATGGGTCTAGCAG 773 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 720 CTCTCCAGCTAAATCACTACCCGGTTTGTCCTGAACCGGACCGAGCCATGGGTCTAGCAG 779 Query 774 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGCCTACAAG 833 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 780 CTCATACCGACTCCACCCTCCTAACCATTCTGTACCAGAACAATACCGCCGGTCTACAAG 839 Query 834 TGTTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGGTTCCTGGCTCGCTAGTGGTCA 893 | |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | Sbjct 840 TATTTCGCGATGATCTTGGTTGGGTCACCGTGCCACCGTTTCCTGGCTCGCTCGTGGTTA 899 Query 894 ACGTTGGTGACCTCTTCCACATCTTATCCAACGGATTGTTTAAAAGCGTGCTGCACCGCG 953 ||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| Sbjct 900 ACGTTGGTGACCTCTTCCACATCCTATCCAATGGATTGTTTAAAAGCGTGTTGCACCGCG 959 Query 954 CTAGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCACAATCTG 1013 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 960 CTCGGGTTAACCAAACCAGAGCCCGGTTATCTGTAGCATTCCTTTGGGGTCCGCAATCTG 1019 Query 1014 ATATCAAGATATCACCCGTACCGAAGCTGGTTAGTCCGGTTGAATTGCCTCTATACCAAT 1073 |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1020 ATATCAAGATATCACCTGTACCGAAGCTGGTTAGTCCCGTTGAATCGCCTCTATACCAAT 1079 Query 1074 CGGTCACATGGACAGAGTATCTTCGAACAAAAGCAACTCACTTCAATAAAGCTCTTTCAA 1133 |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1080 CGGTGACATGGAAAGAGTATCTTCGAACAAAAGCAACTCACTTCAACAAAGCTCTTTCAA 1139 Query 1134 TGATTAGAAATCACAGAGAGGAATGATTAATCATGAGATAATAATATTTGTGATCCGCTA 1193 ||||||||||||||||||| ||||||||| || |||||||| |||||||| ||| Sbjct 1140 TGATTAGAAATCACAGAGAAGAATGATTA-----GA--TAATAATAGTTGTGATCTACTA 1192 Query 1194 GTTAGTTTGATTAATAAATTGTTGTTAATTATTTCAGCAATATGATT 1240 ||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 1193 GTTAGTTTGATTAATAAATTGTTGTAAATGATTTCAGCAATATGATT 1239 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60943461630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5