BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471781 Length=1171 Score E Sequences producing significant alignments: (Bits) Value AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex p... 1840 0.0 AT1G15810.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:5... 137 2e-31 > AT1G15820.1 | Symbols: LHCB6, CP24 | light harvesting complex photosystem II subunit 6 | chr1:5446462-5447859 REVERSE LENGTH=1183 Length=1183 Score = 1840 bits (996), Expect = 0.0 Identities = 1121/1180 (95%), Gaps = 14/1180 (1%) Strand=Plus/Plus Query 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTTTCATTATCTCACATTG 60 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1 AGAAATCTATCCACGACAGCCTCTGAGATTTCGTCTATAGATTCTCATTATCTCACATTG 60 Query 61 TCCCTCTAAATCTCCTCCCTTTGATTCTTTCTGCTCCG-AAAAC----AGAGAG---AAC 112 ||||||||||||||||| |||||||||||||||||||| ||||| |||||| ||| Sbjct 61 TCCCTCTAAATCTCCTCTCTTTGATTCTTTCTGCTCCGAAAAACAGAGAGAGAGAACAAC 120 Query 113 AACCAAACACTCACTTCTCCACATCTTGAGAGaaaaaaaaCAGAGGAGGTATATTAGAGA 172 ||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||||| Sbjct 121 AACCAAACACTCATTTCTCCACATCTTGAGAG-AAAAAAACAGAGCAAGTATATTAGAGA 179 Query 173 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCTCATGGCGATGGCGGTCTCCGGAGCTGTCCTCAGTGGGCTTGGTTCTTCGTTCCTCAC 239 Query 233 CGGAGGCAAGAGGA-GTGCCACCGCATTGGGAAACGGCGTTGGCACTGGAGCTCAGAGAG 291 ||||||||||| || ||||||||||||||| || |||||| ||||||||||||||||||| Sbjct 240 CGGAGGCAAGA-GAGGTGCCACCGCATTGGCAAGCGGCGTAGGCACTGGAGCTCAGAGAG 298 Query 292 TTGGCCGGAAAACTCTGATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 351 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 TTGGCAGGAAAACTCTTATTGTCGCTGCTGCGGCTGCTCAGCCTAAGAAATCTTGGATCC 358 Query 352 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCGG 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 359 CTGCCGTTAAAGGTGGTGGCAACTTCCTTGACCCTGAATGGCTCGATGGCTCGCTACCAG 418 Query 412 GTGATTACGGGTTCGACCCACTGGGTTTGGGAAAAGACCCGGCTTTTCTGAAATGGTACA 471 | |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||| Sbjct 419 GAGATTTCGGGTTCGACCCATTGGGTTTGGGGAAAGACCCGGCTTTTCTGAAATGGTACA 478 Query 472 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTTGTTG 531 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 479 GAGAGGCTGAGCTGATCCATGGCCGATGGGCGATGGCAGCGGTTCTTGGGATCTTCGTCG 538 Query 532 GCCAGGCTTGGAGCGGTGTGCCTTGGTTCGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 591 ||||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||| Sbjct 539 GCCAGGCCTGGAGCGGTGTGGCATGGTTTGAAGCTGGAGCCCAGCCAGACGCGATCGCTC 598 Query 592 CCTTCTCGTTTGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 651 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 CCTTCTCGTTCGGGTCGCTTCTTGGAACCCAATTGCTTCTCATGGGTTGGGTGGAGAGCA 658 Query 652 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCGACGCCGTGGT 711 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 659 AACGATGGGTCGATTTCTTCAACCCGGATTCTCAATCGGTTGAGTGGGCAACGCCATGGT 718 Query 712 CGAGGACCGCCGAGAATTTCGCCAACTATACCGGCGATCAGGGATATCCCGGTGGGAGAT 771 ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 719 CGAAGACCGCCGAGAATTTCGCGAACTATACCGGCGATCAGGGATACCCCGGTGGGAGAT 778 Query 772 TCTTTGATCCGTTGGGTCTCGCCGGCAAAAATCGCGACGGTGTTTATGAGCCGGACGTAG 831 |||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| | | Sbjct 779 TCTTCGATCCGTTGGGTCTCGCCGGGAAAAACCGCGACGGTGTTTATGAGCCGGACTTTG 838 Query 832 AGAAGCTGGAGAGGCTGAAATTGGCGGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 891 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 839 AGAAGCTGGAGAGGCTGAAATTGGCAGAGATTAAGCACTCGAGGCTCGCAATGGTTGCCA 898 Query 892 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 951 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TGTTGATCTTTTACTTTGAGGCCGGGCAGGGGAAAACGCCTCTCGGTGCTCTTGGTTTGT 958 Query 952 GAGATAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTTCAAAAACCTAATG 1011 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 959 GAGAAAACGGCATGATGTTTTTGATTCTGTAGATACAATTTCTCTTCCAAAAACCTAATG 1018 Query 1012 TTTCTCCTCTTCAATGTGACATTTGGGAAAAGATCATCATATCATTGCTTAAAAATGTAA 1071 |||||| |||||||||||||||||||||||||||||||| | ||||||| | |||||||| Sbjct 1019 TTTCTCTTCTTCAATGTGACATTTGGGAAAAGATCATCAAACCATTGCT-ATAAATGTAA 1077 Query 1072 AATGAATTCATATGAGGCTTGTTCATAAATAACTTTATTATCGCAACTCAAACATGAAAG 1131 |||||| |||| ||||||||||| || |||||||||||||| ||||||||| |||||| Sbjct 1078 AATGAAATCAT--GAGGCTTGTTCGTAGATAACTTTATTATCACAACTCAAATGTGAAAG 1135 Query 1132 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1171 |||||||||||||||||||||||||||||||||||||||| Sbjct 1136 GGAATACTAAACATCAATGAAAGAGATCCACAACTTCATT 1175 > AT1G15810.1 | Symbols: | S15/NS1, RNA-binding protein | chr1:5444418-5446564 FORWARD LENGTH=1631 Length=1631 Score = 137 bits (74), Expect = 2e-31 Identities = 84/89 (94%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 1083 ATGAGGCTTGTTCATAAATAACTTTATTATCGCAACTCAAACATGAAAGGGAATACTAAA 1142 ||||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||| Sbjct 1625 ATGAGGCTTGTTCGTAGATAACTTTATTATCACAACTCAAATGTGAAAGGGAATACTAAA 1566 Query 1143 CATCAATGAAAGAGATCCACAACTTCATT 1171 ||||||||||||||||||||||||||||| Sbjct 1565 CATCAATGAAAGAGATCCACAACTTCATT 1537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57479624025 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5