BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471803 Length=2028 Score E Sequences producing significant alignments: (Bits) Value AT1G16020.1 | Symbols: | Protein of unknown function (DUF1712)... 2992 0.0 > AT1G16020.1 | Symbols: | Protein of unknown function (DUF1712) | chr1:5498165-5501358 FORWARD LENGTH=2105 Length=2105 Score = 2992 bits (1620), Expect = 0.0 Identities = 1837/1938 (95%), Gaps = 29/1938 (1%) Strand=Plus/Plus Query 1 CACAAAATGTCACGTAATTCTTCTTCTACTGATTTCAGCTCAATCGGTCAAATTCGAGTT 60 ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 10 CACAAAATGTCGCGTAA---TTCTTCTACTGATTTCAGCTCAATCGCTCAAATTCGAGTT 66 Query 61 TGAGTTTAGAAATT--A----A---------TC-TG------TCTCCGATCGGTGAACTA 98 || ||||||||||| | | || || |||||||||||||||||| Sbjct 67 TGCGTTTAGAAATTGAAGTTGACTCTTCTGTTCTTGAATCTATCTCCGATCGGTGAACTA 126 Query 99 TCTCGCAGTACCAGGTGATTGATCACTCCTTGGACATTGCTCTTTCAATTCGTTCTCAAG 158 ||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| |||||| Sbjct 127 TCTCGCAGTACCAGGAGATTGATCACTCCTTCGACATTGCTCTTTGAATTCGTCCTCAAG 186 Query 159 GGTTTTAATGAGATCGTAGAAGCTTCCAGAAATGGCGTCCATGAGCTCTGGTGATGAAAG 218 ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 187 GGTATTAATGAGCTCGTAGAAGCTACCAGAAATGGCGTCCATGAGCTCTGGTGATGAAAG 246 Query 219 CCTTCGACTTTGCGCATTTGATTTGAGGAGGGGCCAAACTGAAGGACAAGAGTTAGACAA 278 ||||||||||||| |||||||||||||| || ||||||||||||||||||||||| || Sbjct 247 CCTTCGACTTTGCATGTTTGATTTGAGGAGAGGTCAAACTGAAGGACAAGAGTTAGAGAA 306 Query 279 GATTTTGTTCTTTTACCCTGCAGAATTAGACTTATCCACGCAGTTATCAGTGATCGGGCT 338 |||||||||||||| ||||| || |||||||| || ||||||||||||||||||||||| Sbjct 307 AATTTTGTTCTTTTATCCTGCCGATTTAGACTTCTCGACGCAGTTATCAGTGATCGGGCT 366 Query 339 CAGTGAAGGTCTTATTACTTTTACTAGACTTTTCTCTCCGGAGGCAGCTTGTGAAGTAAT 398 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 367 CAGTGAAGGGCTTATTACTTTTACTAGACTTTTCTCTCCGGAGGCGGCTTGTGAAGTGAT 426 Query 399 AGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCGGATATCTGGATGGTTAT 458 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 427 CGAAGCAGAAAGACATTCCCATGTTTTCTATGAGGCTGAACCTGATATCTGGATGGTTAT 486 Query 459 GGTTGTGGAGAAAAATAAGGAGACAGGAGCAATATGGAGGATTGATGCATTAAGGAGGGT 518 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 487 GGTTGTGGAGAAAAATAAGGAGACAGGAGCGATATGGAGGATCGATGCATTAAGGAGGGT 546 Query 519 GCTTAAAGAAGTGCACTCACTCTTTGTTATGTTTCACGGGTCAATTAGGGCATTAATCGA 578 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 547 GCTTAAAGAAGTGCACTCACTCTTTGTGATGTTTCACGGGTCAATTAGGGCATTAATCGA 606 Query 579 AAAAGAACCAACAGGAGGGCTTACCCGATCACTGTTGTACCCGTTCATCACTGATTATTT 638 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 607 AAAAGAACCAACAGGAGGGCTTACCCGATCACTATTGTACCCGTTCATCACAGATTATTT 666 Query 639 AAGCACATTTCAAAAATGGTCTCTCTCGGAAGACTGCTGCTGTGAtttttttGTTGGGAA 698 |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| Sbjct 667 AAGCACATTTCAAATATGGTCTCTCTCGGAAGACTGCTGCTGTGAATTTTTTGTTGGGAA 726 Query 699 GAAACTTCAGCTACCAACTTTCCGTGAAACTTTGAGAGAGCGTGGAACTGTTCAAATGCT 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 GAAACTTCAGCTACCAACTTTCCGTGAAACTTTGAGAGAGCGTGGAACTGTTCAAATGCT 786 Query 759 TACTTTAGCAAGGGACATTGCAGTTGAAGTTCAGTCTCTTGTTCAAGTACTAGATTCATG 818 ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| Sbjct 787 TACTTTAGCAAGGGATACTGCAGTTGAAGTTCAGTCTCTTGTTCAAGTACTAGATTCATG 846 Query 819 TGCTGGGAGCTTACGATGTCACTCTATGATCTTATTTCAAGATCTGCTGGTTTCAACAAC 878 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 847 TGCTGGGAGCTTACGATGTCACTCTATGATCTTATTTCAAGATCTTTTGGTTTCAACAAC 906 Query 879 CCTCTCAGCTGATGATACCGTCGACTTATTTACATTTGCTGTAATGAGGTTGACCTCAAA 938 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 907 CCTCTCAGCTGATGATACCGTCGACTTGTTTACATTTGCGGTAATGAGGTTGACCTCAAA 966 Query 939 AGCTTTATCCTCTGACGCAAGTTCTTGGTCATATCTACGTAAAGGGCCTGGTTCATCTGA 998 ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 967 AGCTTTATCCTCTGATACGAGTTCTTGGTCATATCTACGTAAAGGGCCTGGTTCATCTGA 1026 Query 999 AATCTCTTCTAGATCTACTTTGGCACCCATTGGCTCAATTGATTCCCTACACTCAAGAAA 1058 ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||| Sbjct 1027 AATCTCTTCTAGATCTAATCTGGCACCCGTTGGCTCAATTGATTCCCTACACTCAAGAAA 1086 Query 1059 CGGTAATGACATGCATCATGTTATTAGGCCACTACAAAATGATAAGTGGACAAAAGGGAA 1118 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1087 CGGTAATAACATGCATCATGTTATTAGGCCACTACAAAATGATAAGTGGACAAAAGGGAA 1146 Query 1119 AGATGGGTTTTTAATAACCGATATTTGGGGTCTAGAGACTGGCGGTTCACCTGATTCTGC 1178 |||||||||| |||||||||||||||||||||| ||||||||||| || ||||||||||| Sbjct 1147 AGATGGGTTTCTAATAACCGATATTTGGGGTCTTGAGACTGGCGGCTCCCCTGATTCTGC 1206 Query 1179 CATCCCTACAATCTGGCTTCAGCAGACACAAGAAAGAATGTATCTCCTTGCTTATCAGCA 1238 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1207 CATCCCTACAATTTGGCTTCAGCAGACACAAGAAAGAATGTATCTCCTTGCCTATCAGCA 1266 Query 1239 TAAAAGTCTCACCTTACTTCTTCTCATGCCTACAAATGCCATTGTCAATGGTGATTTAAG 1298 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 1267 TAAAAGTCTCACCTTACTTCTTCTGATGCCTACAAATGCCATTGTCAATGGAGATTTAAG 1326 Query 1299 CGTCTCAGCCGTGAAACAGCAAGTTATTGAAGATGCATCACTGAGAATTTTGAAAATCGA 1358 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1327 CATCTCAGCCGTGAAACAGCAAGTTATTGAAGATGCATCACTGAGAATTTTGAAAATTGA 1386 Query 1359 AGAGAAGATTTCAAGAGGGTGGGGCGGTGAGAATACTTACCATATTAAGGGTTACCGTTA 1418 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1387 AGAGAATATTTCAAGAGGGTGGGGCGGTGAGAATGCTTACCATATTAAGGGTTACCGTTA 1446 Query 1419 CTTAGTAGTTGATAGTGACATGGAAGTATCCAGAGCTTCTCCTTCAGGAAAAGTAACAAC 1478 |||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||||||| Sbjct 1447 CTTAGTAGTTGATAATGACACGAAAGTATCCAGATCTTCTCCTTCAGGAAAAGTAACAAC 1506 Query 1479 ACTTGCAAAGGAGTCTCTACTTGCACTAAACAAGCTTAGAGAAGAAGTGGATTTAGAAAA 1538 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1507 ACTTGCAAAGGAGTCTCTACTTGCACTAAACAAGCTTAGAGAAGAAGTGGATTCAGAAAA 1566 Query 1539 AAGTCGTGCGAAAAGG-CAGGAGAAAGACATGGAAATATGCATCAGAGCTAAGAACAATG 1597 ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1567 AAGCCGTGC-AAAAGGACAGGAGAAAGACATGGAAATATGCATCAGAGCTAAGAACAATG 1625 Query 1598 TGTGGGTGATCGCCCGTGTGACCAGAGGCAAAGAGCTTTACATGGCTTTGGAGAAAGGCA 1657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1626 TGTGGGTGATCGCCCGTGTGACCAGAGGCAAAGAGCTTTACATGGCTTTGGAGAAAGGCA 1685 Query 1658 GCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGGTATTGCAGCG 1717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1686 GCGACACTCTTCTTGATACCACAGACGCTGTTGGAAGATTCAGCAACAGGTATTGCAGCG 1745 Query 1718 GAGCGTTCTTGATGGACTAAGTTTTAGTGTTCTTTCTTCTGGTTTTGGGAAGAGGTTTCT 1777 |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 1746 GAGCATTCTTGATGGACTAAGTTTTCGTGTTCTTTCTTCTGGTTTTGGGAAGAGGGTTCT 1805 Query 1778 TCTAGTTTCAAGTACAAAGTGAAAAGCTCAGAAGAAGTAATGAGCACTTCTCTATTAGCC 1837 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| Sbjct 1806 TCTAGTTTCAAGTACGAAGTGAAAAGCTCAGAAGAAGTAATGAGCACTTCTCTCTCAGCC 1865 Query 1838 ATTAATTTTGTTGTG-G-GAAATTGCAGAGAGGAAAACGATTGTGTTCTTAGTTGGCCTG 1895 |||||||||||| || | |||||||||||||||||||||||||||||||||||||||||| Sbjct 1866 ATTAATTTTGTTTTGTGAGAAATTGCAGAGAGGAAAACGATTGTGTTCTTAGTTGGCCTG 1925 Query 1896 TAGATATGTAACAATGAt 1913 |||||||||||||||||| Sbjct 1926 TAGATATGTAACAATGAT 1943 Score = 154 bits (83), Expect = 3e-36 Identities = 105/115 (91%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 1914 ttttttGTGCGGAGGAAAGCATCTTTCTCGTGGGTCTTAATTCTTGGTTTGGTTAGATAT 1973 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 1974 TTTTTTGTGCGGAGGAAAGCATCTTTCTCGTGGGTCTTAATCCTTGGTTTGGTTGGATAT 2033 Query 1974 AGTCACTCCTGATTACTAGTAGTACTATACAAGTGTTATTCCGTATCCGTTCCAA 2028 | |||||||||||||||||| |||||||||||||| || ||||||||| ||| Sbjct 2034 ACCCACTCCTGATTACTAGTA---CTATACAAGTGTTACTCTGTATCCGTTTCAA 2085 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 100501491090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5