BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471804
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16030.1 | Symbols: Hsp70b | heat shock protein 70B | chr1:5... 3197 0.0
> AT1G16030.1 | Symbols: Hsp70b | heat shock protein 70B | chr1:5502206-5504535
REVERSE LENGTH=2330
Length=2330
Score = 3197 bits (1731), Expect = 0.0
Identities = 2081/2248 (93%), Gaps = 32/2248 (1%)
Strand=Plus/Plus
Query 1 TTTTTCTCGAAATGTCTCGTTTCTCTCGTCGAATTCGTATATATATCTGCTTCCATCGAT 60
||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||| |
Sbjct 57 TTTTTCTCGAAATGTCTCGTTCCTCTCGTCGGATTCGTATATATAGCTTCTTCCATCGTT 116
Query 61 TCCGATTCTTCATCAACCAGATAAACAAACAACAGAAATCGAAAAACCTCACTTTCCAAT 120
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 117 TCCGATTCTTCATCAAACAGATAAACAAACAAAAGAAATCGAAAAACCTCAC-TTCCAAT 175
Query 121 TTCAATCAATTACTGAAGCTTTTTTCTAGTAACAATGGCGACGAAATCAGACAAGGCTAT 180
|||| |||||||||||||||||||| ||| ||||||||||||||||||||| || |||||
Sbjct 176 TTCATTCAATTACTGAAGCTTTTTTTTAGCAACAATGGCGACGAAATCAGAGAAAGCTAT 235
Query 181 TGGAATCGATCTCGGCACTACATACAGTTGTGTCGGAGTTTGGATGAATGATCGTGTGGA 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TGGTATCGATCTCGGCACTACATACAGTTGTGTCGGAGTTTGGATGAATGATCGTGTGGA 295
Query 241 GATTATCCCTAACGATCAGGGAAACCGTACGACACCGTCGTACGTCGCCTTCACTGACAC 300
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 296 GATCATTCCGAACGATCAGGGAAACCGTACGACGCCGTCGTACGTCGCCTTCACTGATAC 355
Query 301 TGAGCGGCTGATTGGAGACGCCGCGAAGAATCAAGTGGCGTTGAATCCTCAGAACACTGT 360
|||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 356 TGAGCGGCTGATCGGAGACGCGGCAAAGAATCAAGTGGCTTTGAATCCTCAGAACACTGT 415
Query 361 CTTCGATGCGAAACGTCTCATTGGAAGGAAATTCTCTGATCCTTCTGTTCAGAGTGATTT 420
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 416 ATTCGATGCGAAACGTCTCATCGGAAGGAAGTTCTCTGATCCTTCTGTTCAGAGTGACAT 475
Query 421 GCTTCACTGGCCGTTCAAGGTTGTTTCTGGTCCCGGAGATAAACCGATGATAGTGGTCTC 480
|| ||||||||||||||||||||||| || ||||| || || ||||||||||| || ||
Sbjct 476 ACTCCACTGGCCGTTCAAGGTTGTTTCCGGCCCCGGTGAGAAGCCGATGATAGTCGTTTC 535
Query 481 TTACAAGAACG-AGCAGAAGCAGTTCTCTCCTGAGGAGATATCTTCCATGGTGTTGGTGA 539
|| ||||| | || |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 536 GTATAAGAATGAAG-AGAAGCAGTTTTCTCCTGAGGAAATATCTTCCATGGTGTTGGTGA 594
Query 540 AGATGAAGGAAGTAGCTGAGTCTTTCCTAGGTCACACTA-TTAAAAACGCCGTTGTAACG 598
||||||||||||| |||||| ||||| |||||| ||| | ||||||||||||||||||||
Sbjct 595 AGATGAAGGAAGTCGCTGAGGCTTTCTTAGGTCGCAC-AGTTAAAAACGCCGTTGTAACG 653
Query 599 GTTCCGGCGTATTTCAACGATTCGCAGAGGCAGGCAACGAAGGACGCCGGAGCTATTTCT 658
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 654 GTTCCGGCGTATTTTAACGATTCGCAGAGACAGGCTACGAAGGACGCCGGAGCTATCTCT 713
Query 659 GGGCTGAATGTTTTGAGGATAATCAATGAGCCGACTGCTGCAGCTATAGCTTACGGTTTG 718
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 714 GGGCTTAATGTTTTGAGGATAATCAATGAGCCGACTGCTGCAGCTATAGCTTATGGTTTG 773
Query 719 GACAAGAAGGGTACCAAAGCCGGTGAGAAGAACGTTTTGATTTTCGATCTCGGTGGTGGA 778
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 GATAAGAAGGGTACGAAGGCCGGTGAGAAGAACGTTTTGATTTTCGATCTCGGTGGTGGA 833
Query 779 ACTTTTGATGTTTCGCTGTTGACGATTGAAGAAGGTGTTTTTGAAGTGAAAGCTACTGCT 838
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 834 ACTTTTGATGTTTCGCTGTTGACGATTGAAGAAGGTGTCTTTGAAGTGAAAGCTACTGCT 893
Query 839 GGAGATACTCATCTTGGTGGTGAAGACTTTGACAACAGACTTGTGAATCATTTCGTTGCG 898
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 894 GGAGATACTCATCTTGGTGGTGAAGACTTTGACAACAGACTTGTGAACCATTTCGTTGCG 953
Query 899 GAGTTTAAGAGGAAACACAAGAAGGATATTTCTGGGAATGCGAGGGCTCTTAGGAGGTTG 958
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 954 GAGTTTAGGAGGAAACACAAGAAGGATATTGCTGGGAATGCGAGAGCTCTTAGGAGGCTA 1013
Query 959 AGGACTGCTTGTGAGAGAGCAAAGAGAACGCTTTCTTCCACAGCTCAGACGACTATTGAG 1018
||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 1014 AGGACAGCTTGTGAGAGAGCAAAGAGAACACTTTCGTCCACGGCTCAGACGACTATTGAG 1073
Query 1019 ATTGATTCTTTGCACGAGGGTATTGACTTCTATGCGACGATCTCACGTGCGAGGTTTGAG 1078
||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1074 ATTGATTCTCTGCACGAGGGTATTGACTTCTATGCGACGATATCACGTGCAAGGTTTGAG 1133
Query 1079 GAGATGAACATGGATTTGTTCAGGAAATGTATGGATCCTGTAGAGAAAGTTCTTAAAGAC 1138
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1134 GAGATGAACATGGATTTGTTCAGGAAATGTATGGATCCTGTGGAGAAAGTTCTTAAAGAC 1193
Query 1139 GCCAAGATCGACAAGAGCAGTGTGCACGATGTGGTTCTGGTCGGAGGATCTACGAGGATT 1198
|||||| ||||||||||||||||||||||||| |||||||| ||||| || |||||||||
Sbjct 1194 GCCAAGCTCGACAAGAGCAGTGTGCACGATGTTGTTCTGGTTGGAGGGTCGACGAGGATT 1253
Query 1199 CCGAAAATTCAACAGCTTTTGCAAGATTTCTTCAACGGGAAGGAGCTATGCAAGAGCATA 1258
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 1254 CCGAAAATTCAACAGCTTTTGCAAGATTTCTTTAATGGGAAGGAGTTATGCAAGAGCATA 1313
Query 1259 AACCCTGATGAAGCTGTTGCCTATGGAGCTGCGGTTCAGGCTGCGATACTGACTGGTGAA 1318
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1314 AACCCTGATGAAGCTGTTGCCTATGGAGCTGCGGTTCAGGCTGCGATTCTTACAGGTGAA 1373
Query 1319 GGAAGCGACAAGGTCCAAGATCTTCTGCTTCTTGATGTGGCGCCCCTAAGCCTTGGAATT 1378
||||| || |||||||| |||||||||||||||||||| || || || ||||||||| ||
Sbjct 1374 GGAAGTGAAAAGGTCCAGGATCTTCTGCTTCTTGATGTTGCTCCGCTTAGCCTTGGACTT 1433
Query 1379 GAGACAGCCGGTGGGGTGATGAGTGTGTTAATCCCGAGGAATACGACGGTTCCTTGTAAG 1438
|||||||| |||||||| |||| ||||||||| || || || ||||||||||||||||||
Sbjct 1434 GAGACAGCAGGTGGGGTCATGACTGTGTTAATTCCAAGAAACACGACGGTTCCTTGTAAG 1493
Query 1439 AAGGAGCAAGTGTTCTCTACGTATGCGGACAATCAGCCAGGCGTTCTGATCCAAGTCTAT 1498
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1494 AAGGAGCAAGTGTTCTCTACGTATGCAGACAATCAACCAGGCGTTCTGATCCAAGTCTAC 1553
Query 1499 GAAGGAGAACGTGCAAGGACCAAAGATAACAACCTTCTCGGGACTTTCGAGCTCAAGGGC 1558
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1554 GAAGGAGAACGTGCAAGGACCAGAGATAACAACCTTCTCGGAACTTTCGAGCTCAAGGGC 1613
Query 1559 ATTCCTCCTGCACCACGTGGAGTTCCTCAAATCAATGTTTGCTTTGACATGGACGCGAAT 1618
||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1614 ATTCCTCCTGCTCCACGTGGGGTTCCTCAAATCAATGTTTGCTTCGACATTGACGCGAAT 1673
Query 1619 GGGATCCTAAATGTGTCGGCGGAGGATAAAACCGCTGGTGTAAAGAACCAGATCACGATC 1678
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1674 GGGATCTTAAATGTGTCGGCTGAGGATAAAACCGCTGGTGTGAAGAACCAGATCACGATC 1733
Query 1679 ACGAACGACAAAGGAAGGTTGAGTAAAGAGGAGATAGAGAAGATGGTGCAAGATGCGGAG 1738
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1734 ACCAACGACAAAGGAAGGTTGAGTAAAGAGGAGATAGAGAAGATGGTGCAAGATGCTGAG 1793
Query 1739 AAGTACAAGGCTGAGGATGAGCAAGTGAAGAAGAAAGTGGAGGCCAAGAACTCG-TTGGA 1797
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |
Sbjct 1794 AAGTACAAGGCTGAGGATGAGCAAGTGAAGAAGAAGGTGGAGGCCAAGAATTCGCTTG-A 1852
Query 1798 GAACTATGCTTACAACATGAGAAACACTATCAAGGATGAGAAACTCGCGCAGAAGTTAGA 1857
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1853 GAACTATGCTTACAACATGAGAAACACTATCAAGGATGAGAAACTCGCACAGAAACTA-A 1911
Query 1858 -TCAAGAGGATAAGCAGAAGATTGAGAAGGCGATTGATGAGACAATCGAATGGATTGAAG 1916
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1912 CTCAAGAGGATAAGCAGAAGATTGAGAAGGCGATTGATGAAACAATTGAATGGATCGAAG 1971
Query 1917 GAAACCAGCTGGCGGAAGTTGATGAATTTGAGTACAAGTTGAAAGAGTTGGAAGGTATTT 1976
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1972 GAAACCAGCTGGCGGAAGTTGATGAGTTTGAGTACAAGTTGAAAGAGTTAGAAGGTATTT 2031
Query 1977 GCAACCCAATCATCTCAAAGATGTATCAGGGTGGTGCCGGAGGTCCCACTGGAGGTATGC 2036
||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct 2032 GCAACCCAATCATCTCAAAGATGTATCAGGGTGGTGCTGCTG--C----TGGAGGTATGC 2085
Query 2037 CGACAGATGGTGGTTTCAGTAGCTCAGGTGGTGCTGGAGGTCCCAAGATCGAAGAGGTGG 2096
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2086 CGACAGATGGTGATTTCAGTAGCTCAGGTGCTGCTGGAGGTCCCAAGATCGAAGAGGTGG 2145
Query 2097 ACTAAACCGTGTGCAGAGTGTAAAGACAAAAGAGTGGCTTTGGACCATTTGCGAGTCTTT 2156
| || | ||||| || |||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 2146 ATTAGAGCGTGTTTAGTGTGTTAAGACGAAAGAGTGGCTTTGGACCATTAGCGAGTCTTT 2205
Query 2157 -CTTT-T---GT---A--T--TGT-GT-T-C--ATAGGTGTTTTGCTAGTGAACTATAGT 2199
|||| | || | | ||| || | | ||||||||||||||||||||| |||||
Sbjct 2206 TCTTTGTATTGTGTCAAATAGTGTTGTGTACTCATAGGTGTTTTGCTAGTGAACGATAGT 2265
Query 2200 TGTATGCTTTACATATTTCAGTTGTTTC 2227
||||||||||||||||||||| ||||||
Sbjct 2266 TGTATGCTTTACATATTTCAGCTGTTTC 2293
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110491399545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5