BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471810
Length=1238
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16080.1 | Symbols: | unknown protein; LOCATED IN: apoplast... 1921 0.0
> AT1G16080.1 | Symbols: | unknown protein; LOCATED IN: apoplast,
chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED
IN: 23 plant structures; EXPRESSED DURING: 14 growth
stages; Has 81 Blast hits to 81 proteins in 28 species: Archae
- 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 62;
Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). |
chr1:5514317-5516027 FORWARD LENGTH=1285
Length=1285
Score = 1921 bits (1040), Expect = 0.0
Identities = 1197/1267 (94%), Gaps = 33/1267 (3%)
Strand=Plus/Plus
Query 1 ACTGTTCAAATTAGT----CC-AAACCATGAGAGGCCACAACATCATCGTCGAAGCCCAT 55
||||||||||||||| || ||||||||||||||||| | | ||||||||||||||||
Sbjct 11 ACTGTTCAAATTAGTCCAACCAAAACCATGAGAGGCCAC-A-A-CATCGTCGAAGCCCAT 67
Query 56 TATCATCACTATGGCTAAAGCCAGCAGCACTCTGTTTGCTGTCTCCTGCTCAGCTTCAGC 115
||| ||||| |||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 68 TATTATCACCATGGCTAAAGCCAGTAGTACTCTGTTTGCTGTTTCCTGCTCCGCTTCAGC 127
Query 116 TCGTTTCTCTTTCCTCCGACACTCTGAATCTCTTAAACCCTCAGTTTCAAGAGCGAGATT 175
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 128 TCGTTTCTCTTTCCTCCGACGCTCTGAATCTCTTAAACCCTCAGTTTCAAGAGCGAGATT 187
Query 176 CGCCGTCCCAATGGCTATGGCCGCCGCGTCAGCTGCCACAGCTAAAAAACTAGCACCTGC 235
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 188 CGCCGTTCCAATGGCTATGGCCGCCGCGTCAGCTGCCACCGCTAAAAAACTAGCGCCTGC 247
Query 236 CGTGATTGTGGGTGGCGGAAGAGTCGGAAGGGCGTTACAGGAAATGGGTAATGGAGAGGA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 248 TGTGATTGTGGGTGGCGGAAGAGTCGGAAGGGCGTTACAGGAAATGGGTAATGGCGAGGA 307
Query 296 TTTGTTGGTGAAGAGAGGAGAAGCAGTTCCGGTTGATTTTGAAGGACCCATTTTGGTTTG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 TTTGTTGGTGAAGAGAGGAGAAGCAGTTCCGGTTGATTTTGAAGGACCCATTTTGGTTTG 367
Query 356 TACTAGAAATGATGATCTCGATGCTGTTCTTGAAGCTACTCCTCAGTCTAGATGGAAAGA 415
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TACAAGAAATGATGATCTCGATGCTGTTCTTGAAGCTACTCCTCAGTCTAGATGGAAAGA 427
Query 416 TTTGGTCTTCTTTCAAAATGGAATGATGGAGCCGTGGTTTGAGAGCAAAGGTTTGGGTGA 475
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 TTTGGTCTTCTTCCAAAATGGAATGATGGAGCCGTGGTTTGAGAGCAAAGGTTTGGGTGA 487
Query 476 TACAGACCAAGTCTTGGCCTATTTTGCTGTGTCAAAGCTCGGCGAGCCTCCCGTGGATGG 535
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TACAGACCAAGTGTTGGCCTATTTTGCTGTGTCAAAGCTCGGCGAGCCTCCCGTGGATGG 547
Query 536 AAAGACTGACACTAACCCAGAAGGTCTAACTGCTGCTTATGGAAAATGGGCTTCAGAGAT 595
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 548 AAAGACTGACACTAACCCAGAAGGTCTTACTGCTGCTTATGGAAAATGGGCTTCAGAGAT 607
Query 596 AGCTGCAAGATTGCAATCTGGTGGCCTCTCTTGCAAGGTACTTGACAAAGAAGCTTTTCA 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 AGCTGCAAGATTGCAATCTGGTGGCCTCTCTTGCAAGGTACTTGACAAAGAAGCTTTTCA 667
Query 656 GAAGCAAATGTTGGAGAAACTCATTTGGATTTGTGCATTTATGCTTGTTGGAGCTCGTCA 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 GAAGCAAATGTTGGAGAAACTCATTTGGATTTGTGCATTTATGCTTGTTGGAGCTCGTCA 727
Query 716 TCCAGGTGCAAGTGTTGGCACGGTGGAGAAAGAATACAGAGATGAAGTGTCGATACTCAT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 728 TCCAGGTGCAAGTGTTGGCACGGTGGAGAAAGAATACAGAGATGAAGTGTCGAGACTCAT 787
Query 776 CCAAGAACTCGCAGCAGCTGCTGCTGCGGAAAAAGGACTAACCTTTGAAGAGAACATGGT 835
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 788 CCAAGAACTTGCAGCAGCTGCTGCCGCGGAAAAAGGACTAACCTTTGAAGAGAACATGGT 847
Query 836 GGAGAGACTATGTGCTTATTCACGAGCTGTTTCTCATTTCCCGACTGCTGTCAAAGAATT 895
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 848 GGAAAGACTATGTGCTTATTCACGAGCTGTTTCTCATTTCCCAACTGCTGTTAAAGAATT 907
Query 896 TAAATGGAGGAATGGTTGGTTTTATTCACTCTCAGAGAAGGCGATTGCAGAAGGGAAACC 955
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 908 TAAATGGAGGAATGGTTGGTTTTATTCACTCTCAGAGAAGGCGATTGCGGAAGGGCAACC 967
Query 956 GGATCCGTGTCCCCTCCATACCGAATGGCTGAAAGAGCTTAAAGTGATATAGAGCCAGTG 1015
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GGATCCGTGTCCCCTCCATACCGAATGGCTGAAAGAGCTTAAAGTGATATAGAGCCAGTC 1027
Query 1016 TGTGTA--TTGTGAGTATCTGGATTAAGTAGCATTCTTACACATTTTAAGTAGATGATCT 1073
| | || |||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1028 TTTCTAAATTGTGAGTATCTGGATTAAGTATCATTCTTACATATTTTAAGTAGATGATCT 1087
Query 1074 GAAACTAGTATGAACTGTGTACACGCATGAGAAGTGaaaaaaa-a---aaG-----A-TA 1123
||||||||| | |||||||||||||| |||||||||||||||| | || | ||
Sbjct 1088 GAAACTAGTGTCAACTGTGTACACGCCTGAGAAGTGAAAAAAAGATGTAATTTTTTAATA 1147
Query 1124 A----------TCAGTTCACGTTTTGTAAAAAGTCCAGACTTTTATCTGTGTAAACTTGT 1173
| |||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 1148 AAGAAAGAGAATCAGTTCACGCTTTGTAAAATGTCCAGACTTTTATATGTGTAAACTTGT 1207
Query 1174 GCATTTT-ATAGAATCAAAACTTTTCTGCTTCTAGACTCCCATCAAT-AGGGAAGACTGG 1231
||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1208 GCATTTTCA-AGAATCAAAACTTTTCTGCTTCTAGACTCCCATCAATTAGGGAAGACTAG 1266
Query 1232 AATCTTC 1238
|||||||
Sbjct 1267 AATCTTC 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60843060540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5