BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471821 Length=1024 Score E Sequences producing significant alignments: (Bits) Value AT1G16240.1 | Symbols: SYP51, ATSYP51 | syntaxin of plants 51 |... 1439 0.0 AT1G79590.1 | Symbols: SYP52, ATSYP52 | syntaxin of plants 52 |... 701 0.0 > AT1G16240.1 | Symbols: SYP51, ATSYP51 | syntaxin of plants 51 | chr1:5555007-5556841 REVERSE LENGTH=1088 Length=1088 Score = 1439 bits (779), Expect = 0.0 Identities = 866/907 (95%), Gaps = 10/907 (1%) Strand=Plus/Plus Query 121 ACAAAGGTCCGAGGAATAATTTGGGATAATGGCGTCTTCGTCGGATTCATGGATGAGAGA 180 ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| Sbjct 186 ACAAAGGTCCGAGAAATAATTTGGAATAATGGCGTCTTCATCGGATTCATGGATGAGAGC 245 Query 181 ATACAACGATGCTTTAAAACTCTCTGAGGAGATTAATGGAATGATATCAGAAAGAAGTTC 240 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 ATACAACGAGGCTTTAAAACTCTCTGAGGAGATTAATGGAATGATATCAGAAAGAAGTTC 305 Query 241 ATCGGCTGTCACAGGGCCTGATGCTCAGCGTCGTGCTTCAGCTATACGAAGGAAGATCAC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 306 ATCGGCTGTCACAGGGCCTGATGCTCAGCGTCGTGCTTCAGCTATACGAAGGAAGATCAC 365 Query 301 CATTTTCGGTACCCGATTAGACAGTCTGCAGTCTCTTCTTGCTCAAATTCATGGAAAACC 360 ||||||||||| | |||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 366 CATTTTCGGTAACAAATTAGATAGTCTGCAGTCTCTTCTTGCTGAAATTCATGGAAAACC 425 Query 361 TATTTCTGAGAAAGAGATGAATCGGCGCAAGGATATGGTAGGGAATTTGAGATCAAAAGC 420 |||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||| Sbjct 426 TATTTCAGAGAAAGAGATGAATCGGCGAAAGGATATGGTAGGGAATCTGAGGTCAAAAGC 485 Query 421 AAACCAGATGGCGAATGCTTTGAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTTGG 480 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 486 AAACCAGATGGCGAATGCTTTGAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTCGG 545 Query 481 GCCAGAAATAAAGCCGGATGATTCCATGAGCAGAGTTACTGGCATGGATAACCAGGGAAT 540 |||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 546 GCCAGATATCAAGCCGGATGATTCCATGAGCAGAGTTACTGGCATGGATAACCAAGGAAT 605 Query 541 TGTTGGTTATCAACGACAAGTTATGAGAGAACAAGACGAAGGACTTGAGCAATTGGAGGG 600 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 606 TGTTGGATATCAACGACAAGTTATGAGAGAACAAGACGAAGGACTTGAGCAATTGGAGGG 665 Query 601 AACAGTCATGAGCACAAAACACATTGCTCTGGCTGTTAGTGAAGAGCTTAACTTGCAGAC 660 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 666 AACAGTCATGAGCACAAAACACATTGCTCTGGCTGTTAGTGAAGAGCTTGACTTGCAGAC 725 Query 661 AAGGCTTATTGATGACTTAGATTACCATGTGGATGTCACTGACTCTCGCTTACGGAG--T 718 ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| | Sbjct 726 TAGGCTTATTGATGACTTAGATTACCATGTGGATGTTACTGACTCTCGCTTAAGGAGAGT 785 Query 719 GCAGAAGAGCCTTGCTGTCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAAT 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 786 GCAGAAGAGCCTTGCTGTCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAAT 845 Query 779 GCTCTTGTCAGTGCTGGGGATTGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTA 838 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 846 GCTCTTGTCAGTGCTGGGGATCGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTA 905 Query 839 TCTGTAATACCAACATCAGAAAACTTATAAGTTTCTCTGTAGGTCACTGTCACTGGCCTC 898 | |||||||||||||||||| |||||||||||| ||||||||||| | ||||||||| Sbjct 906 TATGTAATACCAACATCAGACAACTTATAAGTTCCTCTGTAGGTC-C----ACTGGCCTC 960 Query 899 TACTCTCTATGTGAATGGTTGCAATGTATTTTCCTCATTCCACATTTGTGGTTGAGCTTT 958 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 961 TACTCTCTATGTGAATGGTTGCAATGTATTT-CCTCATTCCACATTTGTGGCTGAGCTTT 1019 Query 959 TCATTTCTCTTCTGTTAC-AAGAACCCTTAAAGTATTATATAATGTGTGCAGTTTTCACA 1017 |||||||||||||||||| || ||||||| ||||| |||||||||||||||||| ||||| Sbjct 1020 TCATTTCTCTTCTGTTACCAA-AACCCTTTAAGTAATATATAATGTGTGCAGTTATCACA 1078 Query 1018 GTTTGCT 1024 ||||||| Sbjct 1079 GTTTGCT 1085 > AT1G79590.1 | Symbols: SYP52, ATSYP52 | syntaxin of plants 52 | chr1:29946296-29948565 FORWARD LENGTH=1139 Length=1139 Score = 701 bits (379), Expect = 0.0 Identities = 607/716 (85%), Gaps = 19/716 (3%) Strand=Plus/Plus Query 148 AATGGCGTCTTCGTCGGATTCATGGATGAGAGAATACAACGATGCTTTAAAACTCTCTGA 207 |||||| ||||| |||||| ||||||||||||| ||||| || ||||| ||||||||||| Sbjct 176 AATGGCCTCTTCTTCGGATCCATGGATGAGAGAGTACAATGAGGCTTTGAAACTCTCTGA 235 Query 208 GGAGATTAATGGAATGATATCAGAAA-GAAGTTCAT-CGGCTGTCACAGGGCCTGATGCT 265 ||| |||||||| ||||| || |||| ||| | | | ||| | | || |||||||||||| Sbjct 236 GGATATTAATGGCATGATGTCTGAAAGGAA-TGCCTCCGGGT-TAACCGGGCCTGATGCT 293 Query 266 CAGCGTCGTGCTTCAGCTATACGAAGGAAGATCACCATTTTCGGTACCCGATTAGACAGT 325 || |||||||| || || || ||||| |||||||||||||| || || |||||||||||| Sbjct 294 CAACGTCGTGCCTCTGCAATTCGAAGAAAGATCACCATTTTGGGGACTCGATTAGACAGT 353 Query 326 CTGCAGTCTCTTCTTGCTCAA-ATTCATGG-AA--AACCTATTTCTGAGAAAGAGATGAA 381 ||||| || ||||||| |||| ||| ||| || | | | |||| |||||||||||||| Sbjct 354 CTGCAATCCCTTCTTG-TCAAGGTTCCTGGCAAGCAGCATGTTTCGGAGAAAGAGATGAA 412 Query 382 TCGGCGCAAGGATATGGTAGGGAATTTGAGATCAAAAGCAAACCAGATGGCGAATGCTTT 441 ||| |||||||||||||| |||||||||||||||||| |||| ||| |||| |||||| Sbjct 413 TCGTCGCAAGGATATGGTTGGGAATTTGAGATCAAAAACAAATCAGGTGGCCTCTGCTTT 472 Query 442 GAACATGTCAAACTTTGCCAATAGAGACAGCTTGCTTGGGCCAGAAATAAAGCCGGATGA 501 ||| |||||||||||||| || |||||||||||| |||| |||| ||||||||||||| Sbjct 473 GAATATGTCAAACTTTGCAAACAGAGACAGCTTGTTTGGAACAGATTTAAAGCCGGATGA 532 Query 502 TTCCATGAGCAGAGT-TACTGGCATGGATAACCAGGGAATTGTTGGT-TATCAACGACAA 559 | | || | ||||| | |||||||||| ||||| ||||||||| || | |||||| ||| Sbjct 533 TGCGATAAATAGAGTCT-CTGGCATGGACAACCAAGGAATTGTT-GTATTTCAACGGCAA 590 Query 560 GTTATGAGAGAACAAGACGAAGGACTTGAGCAA-TTGGAGGGAACAGTCATGAGCACAAA 618 |||||||||||||||||||| ||||||||| || ||||||| |||||||||||| || || Sbjct 591 GTTATGAGAGAACAAGACGAGGGACTTGAG-AAGTTGGAGGAAACAGTCATGAGTACCAA 649 Query 619 ACACATTGCTCTGGCTGTTAGTGAAGAGCTTAACTTGCAGACAAGGCTTATTGATGACTT 678 |||||||||||| ||||||| || ||||| | | ||||||||||||||||||||||||| Sbjct 650 ACACATTGCTCTCGCTGTTAACGAGGAGCTCACCCTGCAGACAAGGCTTATTGATGACTT 709 Query 679 AGATTACCATGTGGATGTCACTGACTCTCGCTTACGGAGTG--CAGAAGAGCCTTGC-TG 735 ||||||| |||||||| |||||||||||||||||||| ||| || ||||||||||| | Sbjct 710 AGATTACGATGTGGATATCACTGACTCTCGCTTACGGCGTGTTCAAAAGAGCCTTGCCT- 768 Query 736 TCATGAACAAGAATATGAGAAGTGGTTGCTCTTGCATGTCAATGCTCTTGTCAGTGCTGG 795 | |||||||||| |||| |||||||||||| |||||||| ||||||||||| ||||| | Sbjct 769 TGATGAACAAGAGCATGAAAAGTGGTTGCTCATGCATGTCTATGCTCTTGTCTGTGCTTG 828 Query 796 GGATTGTCGGTCTTGCTGTTGTAATATGGATGTTGGTTAAGTATCTGTAATACCAA 851 | || || ||||||||| ||||||| ||| || |||||||||| ||||||| |||| Sbjct 829 GAATCGTTGGTCTTGCTCTTGTAATTTGGCTGCTGGTTAAGTACCTGTAATGCCAA 884 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50183912853 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5