BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471828
Length=1351
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16310.1 | Symbols: | Cation efflux family protein | chr1:5... 2065 0.0
> AT1G16310.1 | Symbols: | Cation efflux family protein | chr1:5578431-5580693
FORWARD LENGTH=1399
Length=1399
Score = 2065 bits (1118), Expect = 0.0
Identities = 1250/1311 (95%), Gaps = 20/1311 (2%)
Strand=Plus/Plus
Query 1 ATATGCGGCTTAACTCCTCCTATATTTTCTTTCTCTTTCTCACAACTT-CCCTAGAAACA 59
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3 ATATGCCGCTTAA---CTCCTATATTTTCTTTCTCTTTCTCACAACTTCCCCTAGAAACA 59
Query 60 CTTTTTTCGTAATTCGAACGCAGAGAGATCGGATAATGGCGACGGAGCATAT-AGTCCGT 118
||||||||| |||||||||||| || |||||||||||||||||||||||||| | | |||
Sbjct 60 CTTTTTTCGGAATTCGAACGCACAGCGATCGGATAATGGCGACGGAGCATATAACT-CGT 118
Query 119 ACGAAAGACGAATACAATGTCGAGCTTTTACCTAGTGACGACGATGCGCCGCCGCTTCAA 178
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 ACGGGAGATGAATACAATGTCGAGCTTTTACCTAGTGACGACGATGCGCCGCCGCTTGAA 178
Query 179 TCGTCTTGGCGTCTCAACCTCGAGGCTTTTCAACTTCCTTCTTCACCGCCTTCTTCCACC 238
||||||||||||||||||||||| ||||||||| | | | ||||||||||||
Sbjct 179 TCGTCTTGGCGTCTCAACCTCGACGCTTTTCAA-------C-T---C-CCTTCTTCCACC 226
Query 239 GGTGGCCGTCACGACGCTCGTACTCGCTTTTCTCGATATTTCCGTACTCCCAGAAAGGAA 298
|||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 227 GGTGGCCGTCACGACGGACGTACTCGCTTTTCTCGCTATTTTCGTACTCCAAGAAAGGAA 286
Query 299 CGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCAATGAGATG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 CGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCAATGAGATG 346
Query 359 GAGACTATCCACGAAACTGGTTTTGCATCTGGTGTTCCTACTGAGGAAGAAATGAAGAAG 418
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 347 GAGACTATCCACGAAAATGGTTTTGCATCTGGTGTTCCAACTGAGGAAGAAATGAAGAAG 406
Query 419 CTTGCAAAGAGTGAGAGGCTGGCAGTTCACATATCGAACGCAACAAATTTGGTGCTTTTT 478
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 407 CTTGCAAAGAGTGAGAGACTTGCGGTTCACATATCGAACGCAACAAATTTGGTGCTTTTT 466
Query 479 GTGGCAAAAGTTTATGCCTCTATGGAAAGTAGATCCATGGCTGTGATTGCTTCAACTTTG 538
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 467 GTAGCAAAAGTTTATGCCTCTATGGAGAGTAGATCCATGGCTGTGATTGCTTCAACTTTG 526
Query 539 GACTCTCTCTTGGATCTCTTGTCTGGTTTTATTCTCTGGTTTACAGCTAATGCCATGAGA 598
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 527 GACTCTCTTTTGGATCTCTTGTCTGGTTTTATCCTCTGGTTTACAGCTAATGCCATGAGA 586
Query 599 AAACCAAACCAGTTTCACTATCCTATCGGAAAGCGCCGGATGCAACCTGTGGGCATCATT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 587 AAACCAAACCAGTTTCACTATCCTATCGGAAAGCGCCGGATGCAACCTGTGGGTATCATT 646
Query 659 GTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTACTAGAGTCAGGAAGGCAA 718
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 647 GTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGGCAA 706
Query 719 CTAGTTGCCAAGAGTGGTATTCACATGAATAGCACAGAGGAGAAATGGATGATCGGGATC 778
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 707 CTAGTTGCCAAGAGTGGTATTCATATGAATAGCACAGAGGAGAAATGGATGATTGGTATC 766
Query 779 ATGGTCTCTGTCACCATTGTGAAGTTTCTTCTAATGCTTTATTGCAGAGGATTTCAGAAC 838
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 ATGGTCTCTGTCACCATCGTGAAGTTTCTTCTAATGCTTTATTGCAGAGGATTTCAGAAC 826
Query 839 GAAATCGTTAGGGCCTATGCTCAGGATCACCTCTTTGACGTTGTCACTAATTCAATCGGC 898
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 827 GAAATCGTTAGGGCCTATGCTCAAGATCACCTCTTTGACGTCGTCACTAATTCAATCGGC 886
Query 899 TTAGCAACAGCTGTCTTGGCCGTCAAATTCTACTGGTGGATTGATCCCT-CCGGTGCTAT 957
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 887 TTAGCAACAGCTGTCTTGGCCGTCAAATTCTACTGGTGGATTGATCC-TACCGGTGCTAT 945
Query 958 ACTTATTGCTTTGTACACCATAGCAACATGGGCAAGAACGGTACTAGAGAACGTCCATTC 1017
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 946 ACTTATTGCTTTGTACACCATAGCAACATGGGCAAGAACCGTACTAGAGAACGTCCATTC 1005
Query 1018 GCTGATCGGACGCTCTGCCCCGCCAGATTTCTTGGCGAAACTGACATTCTTGATATGGAA 1077
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1006 ACTGATCGGCCGCTCTGCGCCACCAGATTTCTTGGCGAAACTGACATTCTTGATATGGAA 1065
Query 1078 CCATCACGAACAAATCAAGCATATTGACACAGTAAGGGCTTACACTTTTGGGTCACACTA 1137
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 CCATCACGAACAAATTAAGCATATTGACACAGTAAGGGCTTACACTTTTGGGTCACACTA 1125
Query 1138 CTTTGTGGAAGTAGACATTGTTTTGCCAGAGGACATGAGACTACAAGAGGCTCACAACAT 1197
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 CTTTGTGGAAGTGGACATTGTTTTGCCAGAGGACATGAGACTACAAGAGGCTCACAACAT 1185
Query 1198 CGGAGAGACTCTTCAGGAGAAGCTCGAGCAGCTTGCTGAAGTAGAACGAGCTTTTGTCCA 1257
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1186 CGGAGAGACTCTTCAGGAAAAGCTCGAGCAGCTCGCTGAAGTAGAACGAGCTTTTGTCCA 1245
Query 1258 CATAGACTTTGAGTTCACTCATCGTCCTGAACACAAGTGTAACTAGATTTT 1308
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CATAGACTTTGAGTTCACTCATCGTCCTGAACACAAGTGTAACTAGATTTT 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66515722125
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5