BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471848 Length=970 Score E Sequences producing significant alignments: (Bits) Value AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1426 0.0 AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 150 2e-35 > AT1G16500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:5639032-5640173 FORWARD LENGTH=1005 Length=1005 Score = 1426 bits (772), Expect = 0.0 Identities = 909/974 (93%), Gaps = 14/974 (1%) Strand=Plus/Plus Query 1 tctctctctctctctctctGC-TTCTTGGGTATGGCTGCTGACGTCAGCTCTCTCGTACG 59 ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 18 TCTCTCTCTCTTTCTCTCTGCTTTCTT-GGTATGGCTGCTGACGTCAGCTCTCTCGTACG 76 Query 60 GATACTTG-GTAGGTACAAGGATGATCGGACGGTGGTAAAAGATTCCACCGGACCAAGAT 118 ||||| || |||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 77 GATAC-TGAGTAGGTTCAAGGATGATCGGACGGTTGTAAAAGATTCCACCGGACCAAGAT 135 Query 119 CGACGGTGACACTCATGACACGCGATCTCCTCGGAAGCGGCGGTTGTGTGggaggaggag 178 | |||||| | ||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 136 CCACGGTGGCGCTCATGACACGCGATCTCCTCGGAATCGGCGGTTGTGTGGGTGGAGGAG 195 Query 179 gaggagaaggagACGAACAGTCGCTGGAACTTGACCTTGACCTCCAAGTCCCTAACGGAT 238 || | | ||||||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 196 GA-G-G-AGGAGACGAACAGTCGCTGGAGCTTGACCTTGACGTCCAAGTCCCTAACGGAT 252 Query 239 GGGAAAAACGTCTCGACCTAAAGTCAGGGAAAGTGTATCTGCAACAACAACGCAATTCAA 298 ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 253 GGGAAAAACGTCTCGACTTAAAGTCAGGGAAAGTGTATCTGCAACAACAATGCAATTCAA 312 Query 299 CGAGCTCTTCGTCATCGTCTCATAATCATCATAATCATCACGCAGACCAAACCAACCAAG 358 ||||||| || |||||||||||| |||||||| ||||||||| |||||||||||||||| Sbjct 313 CGAGCTCGTCATCATCGTCTCATCATCATCATCATCATCACGAAGACCAAACCAACCAAA 372 Query 359 CAGTTCCGAGATTTCAAGATTTGAATGTCCCGCCGATCTCCGACAAATCTCCGGCGAAAC 418 ||||||| |||||||||||||||||||| || ||||| ||||| || | ||||||||||| Sbjct 373 CAGTTCCAAGATTTCAAGATTTGAATGTGCCACCGATTTCCGATAAGTTTCCGGCGAAAC 432 Query 419 CATTGCTAAACCTCTTCGACGACGACGACGACACAAGCCTTGAACTGAAGCTActtccgt 478 ||||| ||| |||||||||||| |||||||||||||||||||||||||||||| |||||| Sbjct 433 CATTGTTAAGCCTCTTCGACGATGACGACGACACAAGCCTTGAACTGAAGCTAGTTCCGT 492 Query 479 cttctctctctcgtcctcttccacctcctctgtcttcttattctccAAATACA-TCGCTC 537 ||||| |||||||||||||||| |||||||||||||||| |||||||||| || || ||| Sbjct 493 CTTCTATCTCTCGTCCTCTTCCTCCTCCTCTGTCTTCTTTTTCTCCAAAT-CAGTCTCTC 551 Query 538 TCATATCTATCGAGTGTTTGCACACTAGACAAAGTGAAATCGGCTTTGGAGAGGGCGGAG 597 || |||||||||||||||||||||||||| || ||||||| ||||||||| ||||||||| Sbjct 552 TCGTATCTATCGAGTGTTTGCACACTAGATAAGGTGAAATTGGCTTTGGAAAGGGCGGAG 611 Query 598 AAAGACACAAAGAAACGCCCATCGCCTGACGATGACGGTGTTTACGATGGAACCGCTTCT 657 ||||| ||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||| Sbjct 612 AAAGATACAAAGAAACGCCAATCTCCTGAAGATGACGGCGTTTACGATGGAACCGCTTCT 671 Query 658 GCCACCACCGCCGCGGCGTCTCAAGTGGCGGCTGGATGTCCAGGGTGCTTATCGTACGTG 717 | |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 672 G---CCACCGTCGCGGCGTCTCAGGTGGCGGCTGGATGTCCAGGGTGCTTATCGTACGTG 728 Query 718 TTTGTGGCGAAGAACAATCCGAAATGCCCGAGGTGTCATTCGTTTGTTCCTTTGCCTGCC 777 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 TTTGTGGCAAAGAACAATCCGAAATGCCCGAGGTGTCATTCGTTTGTTCCTTTGCCTGCC 788 Query 778 ATGAAGAAGCCTAAGATTGATCTCAACATTTCGATTTGaaaaaaaCTCTGGGGGATAGAA 837 ||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 789 ATGAAGAAGCCTAAGATTGATCTTAACATTTCGATGTGAAAAAAACTTTGGGGGATAGAA 848 Query 838 TTGAATGGCTTTATTTTGTAGGTTCGATTTCTGTAAATGATAGATAAAATCAGGGGGTTT 897 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 TTGAATGGTTTTATTTTGTAGGTTCGATTTCTGTAAATGATAGATAAAATCAGGGGGTTT 908 Query 898 CATTGAAAAGAAATTGAATGCAGAAAGGAAGAGATGGATGTTATTTTGTAAATTGTTATG 957 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 909 CATTGAAAAGAAATTAAATGCAGAAAGGAAGAGATGGATGTTATTTTGTAAATTGTTATG 968 Query 958 TA-TGGGATTTTCT 970 || ||| ||||||| Sbjct 969 TAATGG-ATTTTCT 981 > AT1G79160.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29779721-29780773 REVERSE LENGTH=966 Length=966 Score = 150 bits (81), Expect = 2e-35 Identities = 241/314 (77%), Gaps = 28/314 (9%) Strand=Plus/Plus Query 2 ctctctctctctctctctGCTTCTTGGGTATGGCTGCTGACGTCAGCTCTCTCGTACGGA 61 |||||||| |||||| || ||||| | ||||||||||||||||||||||||||||||| Sbjct 90 CTCTCTCTATCTCTCGATGATTCTT-GATATGGCTGCTGACGTCAGCTCTCTCGTACGGT 148 Query 62 TACTTGGTAGGT-ACAAGGATGATCG-GACGGTGGTAAAAGATTCCACCGGA-CCAAGAT 118 |||| | ||| |||| |||||||| | ||||||| |||||||| ||||| |||| || Sbjct 149 TACTAAGC-GGTTACAAAGATGATCGAG-CGGTGGTTAAAGATTCTGCCGGAGCCAA-AT 205 Query 119 CGACGGTGACACTCATGACACGCGATCTCCTCGGAAGCGGCGGTTGTGTGggaggaggag 178 | ||| | | || ||||| || || || || |||| |||| || ||||| Sbjct 206 CCTCGGCGGCGCTGATGACTCGTGACCTTCTTGGAAACGGC-----------AG-AGGAG 253 Query 179 gaggagaaggagACGAACAGTCGCTGGAACTTGACCTTGACCTCCAAGTCCCTAACGGAT 238 |||||| | ||| | ||| | || |||||||| ||||| |||||||| | ||| | Sbjct 254 GAGGAG--G----CGATCGGTCTTTAGAGCTTGACCTCGACCTTCAAGTCCCCACCGGTT 307 Query 239 GGGAAAAACGTCTCGACCTAAAGTCAGGGAAAGTGTATCTGCAACAACAACGCAATTCAA 298 |||||||| |||||| | |||||||||||||||||| |||||| | ||||||||| Sbjct 308 ATGAAAAACGCCTCGACTTGAAGTCAGGGAAAGTGTATTTGCAACGAT---GCAATTCAA 364 Query 299 CGAGCTCTTCGTCA 312 ||||||| |||||| Sbjct 365 CGAGCTCGTCGTCA 378 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47471268915 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5