BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg471877 Length=626 Score E Sequences producing significant alignments: (Bits) Value AT1G16810.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 974 0.0 > AT1G16810.1 | Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1754, eukaryotic (InterPro:IPR013865); Has 395 Blast hits to 394 proteins in 162 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 91; Plants - 65; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). | chr1:5755588-5756895 FORWARD LENGTH=728 Length=728 Score = 974 bits (527), Expect = 0.0 Identities = 594/627 (95%), Gaps = 2/627 (0%) Strand=Plus/Plus Query 1 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTGAAGCTAAAAGGGAA 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 83 CAGCCAAGAGATGTCGGCATACGACAATGTTATTGGTGGGAAGCTAAAGCTAAAAGGGAA 142 Query 61 GGCTTTGGATGTGAAAGCAGGTGGCGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 120 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 143 GGCTTTGGATGTGAAAGCAGGTGGAGTAAAGAAGAAGAAGAAACATAAGAGACAGGAAGA 202 Query 121 ACAAGCCCTTAAAATTACTGAACATGAACTCATAGAAGGAGAAAGCACAGAAGCATTGGG 180 |||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 203 ACAAGCTCTTAAAATTACTGATCATGAACTCATAGAAGGAGAAAGCACTGAAGCATTGGG 262 Query 181 TAAATTGATTGAAGGAGAAGAAGAAGGTGAAGAAATTG-GCAGGAGTGATAAGGCGAGCG 239 ||||||||||||||||||||||| || |||||||| || ||||||||| ||||| |||| Sbjct 263 TAAATTGATTGAAGGAGAAGAAGGAGATGAAGAAA-TGAACAGGAGTGAAAAGGCAAGCG 321 Query 240 AGGATGCGAAGTTGCAGCAGCAGCACGATGATGATGATCTCTTAACGCCAGCAGAAAGGC 299 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 322 AGGATGCGAAGTTGCAGCAGCAGCTCGATGATGATGATCACTTAACGCCAGCAGAAAGGC 381 Query 300 GATACATAGAACAGAAACAGAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAAT 359 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 382 GATACATAGAGCAGAAACAAAGATTGGATGTGCAGAAGCTAGCTAAGGAAGCGAACAAGT 441 Query 360 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 442 CTCACCGTAACAGGATTGAGGATTTCAATCAGTATCTGGCTAACATGAGTGAGCACTACG 501 Query 420 ATATCCCTAAAGTCGGACCTGGTTAATATTATACTTTCTTGGCTTTGTTTTACTCTGCTT 479 ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||| Sbjct 502 ATATCCCTAAAGTCGGACCTGGTTAATATAATTCTTTCTTGTCTTTGTTTTACTCTGCTT 561 Query 480 ATCTATTTGGCATTGTTAAACAACTACTTTGGATGTCTGCTATGCTTAGTCCCTATAACT 539 |||||||| |||| ||||||| ||||||||||||||||| |||| ||||||||| ||||| Sbjct 562 ATCTATTTTGCATCGTTAAACGACTACTTTGGATGTCTGTTATGTTTAGTCCCTTTAACT 621 Query 540 TTTCAATTATGTGATCGCCAATCTGTAATGTCAAAAACACATTTTCTTGGAATAATTCTT 599 ||| ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 622 TTTGAATGATGTGATCGCAAATCTGTAATGTCAAAAACACATTTTCTTGGAATATTTCTT 681 Query 600 CTGCATTTCTCAATTTCCTTAATAAAA 626 ||||||||||||| ||| |||| |||| Sbjct 682 CTGCATTTCTCAACTTCTTTAAAAAAA 708 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30190722347 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5