BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471920
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17170.1 | Symbols: ATGSTU24, GST, GSTU24 | glutathione S-tr... 1085 0.0
> AT1G17170.1 | Symbols: ATGSTU24, GST, GSTU24 | glutathione S-transferase
TAU 24 | chr1:5869846-5870840 FORWARD LENGTH=855
Length=855
Score = 1085 bits (587), Expect = 0.0
Identities = 704/759 (93%), Gaps = 13/759 (2%)
Strand=Plus/Plus
Query 1 GAGCTTAATCAAGAACAACAATGGCAGAGGAGGTGGTTCTTCTGGATTTCTGGGCAAGTA 60
|||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 30 GAGCTTAATCAAGAGCAACAATGGCAGATGAGGTGATTCTTCTGGATTTCTGGGCGAGTA 89
Query 61 TGTTTGGCATGAGAATAAGAATTGCTCTGTCGGAGAAAAGAGTCAAATACGATTACAGAG 120
||||||| ||||| | ||||||||||||| ||||||||||||| || |||||| ||||||
Sbjct 90 TGTTTGGGATGAGGACAAGAATTGCTCTGGCGGAGAAAAGAGTTAAGTACGATCACAGAG 149
Query 121 AAGAAGATTTATGGAATAAGAGCTCCTTGCTCCTCGAGATGAACCCGGTTCATAAGAAAA 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 AAGAAGATCTATGGAATAAGAGCTCCTTGCTCCTCGAGATGAACCCGGTTCATAAGAAAA 209
Query 181 TCCCGGTTCTTATCCACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCGAGTACA 240
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TTCCGGTTCTCATCCACAATGGTAAACCGGTATGTGAATCTCTCATTCAGATCGAGTACA 269
Query 241 TAGACGAGACTTGGCCCGACAAAAACTCTCTCCTTCCCTCTGATCCTTACAAGAGAGCTC 300
|||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 270 TAGACGAGACTTGGCCCGACAATAACCCTCTCCTTCCCTCCGATCCTTACAAGAGAGCTC 329
Query 301 ATGCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGCGAGGAGGATTT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 330 ATGCCAAATTCTGGGCCGACTTCATCGACAAAAAGGTGAATGTTACGGCGAGAAGGATTT 389
Query 361 GGGCGGCCAAAGGTGAGGAGCAAGAAGCAGCCAAGGAGTTCATCGAAATACTCAAGACGC 420
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 390 GGGCGGTCAAAGGTGAGGAGCAAGAAGCAGCCAAGGAGTTAATCGAAATACTCAAGACGC 449
Query 421 TAGAGTCCGAGCTTGGAGACAAAAAATACTTTGGAGACGAAACTTTCGGGTATGTGGATA 480
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 450 TAGAGTCTGAGCTTGGAGACAAAAAGTACTTTGGAGACGAAACTTTTGGGTATGTAGATA 509
Query 481 TAGCTCTCATTGGATTCTATAGCTGGTTTGGAGTATACGAGAAGTTTGGGAATATCAGTA 540
||||||||||||||||| |||||||||||| ||| |||||||||||||| ||| ||||||
Sbjct 510 TAGCTCTCATTGGATTCCATAGCTGGTTTGCAGTGTACGAGAAGTTTGGAAATGTCAGTA 569
Query 541 TCGAATCAGAGTGTTCGAAATTGATTGCGTGGGCCAAACGGTGTTTGGATAGAGAGAGTG 600
||||||| ||||||||||||||| |||||||||||||| |||||||||| |||||||| |
Sbjct 570 TCGAATCTGAGTGTTCGAAATTGGTTGCGTGGGCCAAAAGGTGTTTGGAGAGAGAGAGCG 629
Query 601 TCGCTAAAGCCTTGCCAGAGTCAGAGAAGGTCGCTACGTTCGTTTCCGA-CTGTAGGAAG 659
||||||||||| |||| ||||||||||||||| ||| ||| ||||||| | ||||||||
Sbjct 630 TCGCTAAAGCCCTGCCTGAGTCAGAGAAGGTCATTACATTCATTTCCGAAC-GTAGGAAG 688
Query 660 AAACTTGGGTTGGAGTAAATCTCT-CTTC-TT-TGTA-AT--GTT----CTTTGTTCTAT 709
|||||||||||||||||||||||| ||| || ||| || ||| |||||||||||
Sbjct 689 AAACTTGGGTTGGAGTAAATCTCTACTTTGTTATGTTGATCTGTTGTTGCTTTGTTCTAT 748
Query 710 TTTCTTTGAGGTCTATGTA-TGCATAATAATACCAATTT 747
||||||||||||||||||| |||||||||||||||||||
Sbjct 749 TTTCTTTGAGGTCTATGTAATGCATAATAATACCAATTT 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36319288281
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5