BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg471986
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17745.2 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenas... 1893 0.0
AT1G17744.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1194 0.0
> AT1G17745.2 | Symbols: PGDH | D-3-phosphoglycerate dehydrogenase
| chr1:6101015-6105241 FORWARD LENGTH=2360
Length=2360
Score = 1893 bits (1025), Expect = 0.0
Identities = 1229/1321 (93%), Gaps = 39/1321 (3%)
Strand=Plus/Plus
Query 827 AGGAGCAAGTACGTCGGCGTATCTCTTGTCGGAAAAACCTTAGCCGTGATGGGTTTCGGG 886
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 854 AGGAGCAAGTACGTCGGTGTATCTCTCGTCGGAAAAACCTTGGCCGTGATGGGTTTCGGG 913
Query 887 AAAGTCGGGACGGAGGTGGCGAGAAGAGCCAAGGGTCTAGGCATGAACGTTATCTCCCAC 946
||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 914 AAAGTTGGGACGGAGGTGGCGAGAAGAGCCAAAGGTCTAGGCATGACCGTTATCTCCCAC 973
Query 947 GACCCTTACGCGCCAGCTGACAGAGCCAGAGCTCTCGGTGTCGATCTTGTCTCCTTTGAT 1006
|||||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 974 GACCCTTACGCGCCAGCTGACAGAGCCAGAGCTCTCGGTGTCGATCTTGTTTCATTCGAT 1033
Query 1007 CAAGCTATCTCCACCGCCGATTTCGTCTCCCTCCACATGCCTTTAACTCCGGCCACCAAA 1066
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1034 CAAGCTATCTCCACCGCCGATTTCGTCTCCCTGCACATGCCTTTAACTCCGGCCACCAAA 1093
Query 1067 AAGGTCTTCAACGACGAAACCTTCTCGAAGATGAAGAAAGGTGTTCGTCTCATTAATGTC 1126
|||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 1094 AAGGTCTTCAACGACGAAACTTTCTCTAAGATGAAGAAAGGTGTGCGTCTCATTAATGTC 1153
Query 1127 GCTAGAGGCGGCGTCATCGATGAGGATGCGCTCGTTAGAGCTCTTGATACCGGAATCGTT 1186
|||||||| ||||||||||| |||||||| |||||||||||||| ||| |||||||||||
Sbjct 1154 GCTAGAGGTGGCGTCATCGACGAGGATGCACTCGTTAGAGCTCTCGATGCCGGAATCGTT 1213
Query 1187 GCTCAGGCAGCATTAGATGTGTTCTGTGAGGAACCACCATCGAAAGACAGCAAATTGATT 1246
||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||
Sbjct 1214 GCTCAGGCAGCATTAGATGTGTTCTGTGAGGAACCACCATCGAAAGATAGCAGACTAATT 1273
Query 1247 CAGCATGAAAATGTTACTGTAACACCTCATCTTGGAGCTAGCACAAAAGAAGCTCAGGAA 1306
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CAGCATGAAAATGTTACTGTGACACCTCATCTTGGAGCTAGCACAAAAGAAGCTCAGGAA 1333
Query 1307 GGTGTAGCCATCGAGATAGCAGAGGCTGTAGCAGGGGCATT-AAGAGGCGAGCTATCAGC 1365
||||||||||| ||||||||||||||||||||||||||||| || ||| ||| |||||||
Sbjct 1334 GGTGTAGCCATTGAGATAGCAGAGGCTGTAGCAGGGGCATTGAA-AGGAGAGTTATCAGC 1392
Query 1366 TACTG-CG-----G-T-CAA---T-GCTCC--A--------ATG-GTTGA-TCC-T-GA- 1398
||||| || | | ||| | ||||| | || ||||| ||| | |
Sbjct 1393 TACTGCCGTCAATGCTCCAATGGTGGCTCCTGAGGTCTTGTCTGAGTTGACTCCTTATAT 1452
Query 1399 -GTTTTATCT--G-A-CTAGGGAGGTTAGCTGTCCAATTAGCATCTGGA-GTAAAGGAGT 1452
|| ||| || | | || |||||||||||||| || |||||||||||| ||||||||||
Sbjct 1453 TGTCTTAGCTGAGAAGCTTGGGAGGTTAGCTGTGCAGTTAGCATCTGGAGGTAAAGGAGT 1512
Query 1453 ACAGTCCATTAGGGTGGTGTATCGGTCAGCTCG-GAACCGAGATGATTTGGATACTAGAC 1511
|||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct 1513 ACAGTCCATTAGGGTGGTCTATCGGTCAGCTCGTG-ACCGAGATGATTTGGATACTAGAC 1571
Query 1512 TACTTCGTGCAATGATCACAAAGGGAATCATTGAACCGATCTCAGATTCATACGTCAACC 1571
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1572 TACTTCGTGCAATGATCACAAAGGGAATCATTGAACCGATCTCAGATTCATATGTCAA-C 1630
Query 1572 TT-GTGAATGCTGATTTCATAGCTAAACAAAAGGGTCTTCGTATTAGTGAAGAACGAATG 1630
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1631 TTGGTGAATGCTGATTTCATAGCTAAACAAAAGGGTCTTCGTATTAGTGAGGAACGAATG 1690
Query 1631 GTGGTTGATTCATCACCAGAGTACCCTGTTGATTCTATCCAAGTTCAGATTTTGAATGTG 1690
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1691 GTTGTTGATTCATCACCAGAGTACCCTGTTGATTCCATCCAAGTTCAGATTTTGAATGTG 1750
Query 1691 GAATCGAACTTCGCTGGTGCTGTCTCTGATTCTGGTGATATAAGTATCGAAGGGAAAGTG 1750
|| || || ||||||||||||||||||||| |||||||||||||||| |||||||| |||
Sbjct 1751 GAGTCAAATTTCGCTGGTGCTGTCTCTGATGCTGGTGATATAAGTATTGAAGGGAAGGTG 1810
Query 1751 AAATATGGAGTTCCGCATTTAACCTGTGTCGGATCATTTGGTGTGGATGTGAGCCTTGAA 1810
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1811 AAGTACGGAGTTCCGCATTTAACTTGTGTCGGATCATTTGGTGTGGATGTGAGCCTTGAA 1870
Query 1811 GGGAATCTGATACTGTGCAGGCAAGTGGATCAACCAGGGATGATTGGACAGGTTGGTAAC 1870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1871 GGGAATCTGATACTGTGCAGGCAAGTGGATCAACCAGGGATGATTGGACAGGTTGGTAAC 1930
Query 1871 ATACTTGGGGAACAAAACGTGAATGTGAATTTCATGAGTGTTGGAAGAACGGTCTTGAGG 1930
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1931 ATACTTGGAGAACAAAACGTGAATGTGAATTTCATGAGTGTTGGAAGAACAGTGTTGAGG 1990
Query 1931 AAACAAGCGATAATGGCGATTGGAGTTGATGAAGAACCAGACAACAAAACACTTGAGAGG 1990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 AAACAAGCGATAATGGCGATTGGAGTTGATGAAGAACCAGACAACAAAACACTTGAGAGG 2050
Query 1991 ATTGGGGGTGTTTCTGCGATTGAAGAGTTTGTGTTTCTGAAACTATAAAGTTTGAGATGG 2050
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2051 ATTGGGGGTGTTTCTGCGATTGAAGAGTTTGTGTTTCTTAAACTATAAAGTTTGAGATGG 2110
Query 2051 AGTTGCATTGTGGTGTATGAAGAATAAAACTGTGACCCGGATTAAGGTGTTTTATCCTGT 2110
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 2111 AGTTGCATTGTGGTGTATGGAGAATAAAACTGTGACCCGGATTAAGGTGTTTTATCCAGT 2170
Query 2111 G 2111
|
Sbjct 2171 G 2171
Score = 1151 bits (623), Expect = 0.0
Identities = 705/745 (95%), Gaps = 4/745 (1%)
Strand=Plus/Plus
Query 74 CCATAATGAGAAAGATTAAATTAAAACTCATCCATTACCTCATGTAAGCTCTATATTAAC 133
||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 20 CCACAATGTGAAAGATTAAATTAAAACTCATCCATTACCTCCTGTAAGCTCTATATTAAC 79
Query 134 CACGTTAGTC-CTTCTTCACACACTCACAACAACCAATCATAGTTa-aaaaaaaaaaaaG 191
||| |||| | ||||| ||||||||||||||||||||||||| ||| | |||||||||
Sbjct 80 CACTTTAG-CTCTTCTGCACACACTCACAACAACCAATCATATTTATTATTAAAAAAAAG 138
Query 192 CAGTCATGGCATTTTCATCTTCATGTTCGTCCGTCAAGGCCGTCAACTCACGGTGGACGT 251
||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 139 -AGTCATGGCATTTTCATCTTCGTGTTCGTCCGTCAAAGCCGTCAACTCACGGTGGACGT 197
Query 252 CTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCATCCCTGCTTTCCTCCACCGCCGTT 311
||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 198 CTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCCTCCCTGCTTTCCTTCACCGCCGTT 257
Query 312 ACGCAACAAGCGTCAAACTAACGGCCACAAGCGCCGCCTTAAAAACCGTCGAGCAAACGA 371
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 258 ACGCAACAAGCGTCAAACTAACGGCCATAAGCGCCGCCTTAAAAACCGTCGAGCAAACGA 317
Query 372 CGTTAACAGAGGATAACAAATTCTCCACCGTCGGATCTGATTCTGATGAATATAATCCAA 431
|||||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||
Sbjct 318 CGTTAACAGAGGATAACAGATTCTCAACCGTCGGATCTGACTCTGATGAATACAATCCAA 377
Query 432 CGCTTCCAAAGCCGAGGATCCTCGTCGCCGAGAAACTCGGAGAAGCCGGCGTGAATCTCC 491
| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 378 CTCTTCCAAAGCCGAGGATCCTCGTCACCGAGAAACTGGGAGAAGCCGGCGTGAATCTCC 437
Query 492 TCAAGGAATTCGGTGACGTTGACTGCTCTTATGATCTTTCACCGGAGGATCTGAAGAAGA 551
||| ||||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 438 TCAGGGAATTCGGCGACGTTGACTGCTCTTACGATCTTTCGCCGGAAGATCTGAAGAAGA 497
Query 552 AAGTGGCGGAGACTGACGCTCTGATCGTGAGAAGCGGGACAAAAGTGACGAGGGAAGTGT 611
|||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 498 AAGTGGCGGAGAGTGACGCTCTGATCGTGAGAAGCGGAACTAAAGTGACGAGGGAAGTGT 557
Query 612 TTGAGGCGGCGAAGGGGCGGTTGAAAGTGGTCGGAAGAGCCGGAGTTGGGATTGACAATG 671
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TTGAGGCGGCGAAGGGGAGGTTGAAAGTGGTCGGAAGAGCCGGAGTTGGGATTGACAATG 617
Query 672 TTGATCTGCAGGCAGCGACGGAGCACGGCTGTTTGGTGGTTAATGCTCCGACGGCTAATA 731
||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 618 TTGATCTGCAGGCGGCGACGGAGCACGGGTGTTTGGTGGTTAATGCTCCAACGGCTAATA 677
Query 732 CGGTGGCCGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGGCACGTAACGTCGCTC 791
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 678 CGGTGGCTGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGGCACGTAACGTTGCTC 737
Query 792 AGGCCGACGCGTCTATTAAAGCCGG 816
|||||||||| ||||||||||||||
Sbjct 738 AGGCCGACGCTTCTATTAAAGCCGG 762
> AT1G17744.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: stem;
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr1:6100961-6101983 REVERSE LENGTH=1023
Length=1023
Score = 1194 bits (646), Expect = 0.0
Identities = 764/820 (93%), Gaps = 11/820 (1%)
Strand=Plus/Minus
Query 1 GCATGTGCTTCTCATTTTATATACTCTTTTACCAAACAAACTACTATTCAACTT-A-ACT 58
|||||||||||||||||||| |||||||||||||||| || ||| |||||||| | ||
Sbjct 1020 GCATGTGCTTCTCATTTTATTTACTCTTTTACCAAAC-AA--ACTGTTCAACTTAATACA 964
Query 59 TATTTTTAATTTTGACCATAATGAGAAAGATTAAATTAAAACTCATCCATTACCTCATGT 118
|| | || | | ||| |||| |||||||||||||||||||||||||||||||| |||
Sbjct 963 TAATGTT--GGTAGCCCACAATGTGAAAGATTAAATTAAAACTCATCCATTACCTCCTGT 906
Query 119 AAGCTCTATATTAACCACGTTAGTC-CTTCTTCACACACTCACAACAACCAATCATAGTT 177
|||||||||||||||||| |||| | ||||| ||||||||||||||||||||||||| ||
Sbjct 905 AAGCTCTATATTAACCACTTTAG-CTCTTCTGCACACACTCACAACAACCAATCATATTT 847
Query 178 a-aaaaaaaaaaaaGCAGTCATGGCATTTTCATCTTCATGTTCGTCCGTCAAGGCCGTCA 236
| | ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 846 ATTATTAAAAAAAAG-AGTCATGGCATTTTCATCTTCGTGTTCGTCCGTCAAAGCCGTCA 788
Query 237 ACTCACGGTGGACGTCTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCATCCCTGCTT 296
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 787 ACTCACGGTGGACGTCTCCGTCTCCGTCACCGTCTTCTAGATTCGCCGTCCTCCCTGCTT 728
Query 297 TCCTCCACCGCCGTTACGCAACAAGCGTCAAACTAACGGCCACAAGCGCCGCCTTAAAAA 356
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 727 TCCTTCACCGCCGTTACGCAACAAGCGTCAAACTAACGGCCATAAGCGCCGCCTTAAAAA 668
Query 357 CCGTCGAGCAAACGACGTTAACAGAGGATAACAAATTCTCCACCGTCGGATCTGATTCTG 416
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 667 CCGTCGAGCAAACGACGTTAACAGAGGATAACAGATTCTCAACCGTCGGATCTGACTCTG 608
Query 417 ATGAATATAATCCAACGCTTCCAAAGCCGAGGATCCTCGTCGCCGAGAAACTCGGAGAAG 476
||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||||||
Sbjct 607 ATGAATACAATCCAACTCTTCCAAAGCCGAGGATCCTCGTCACCGAGAAACTGGGAGAAG 548
Query 477 CCGGCGTGAATCTCCTCAAGGAATTCGGTGACGTTGACTGCTCTTATGATCTTTCACCGG 536
|||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 547 CCGGCGTGAATCTCCTCAGGGAATTCGGCGACGTTGACTGCTCTTACGATCTTTCGCCGG 488
Query 537 AGGATCTGAAGAAGAAAGTGGCGGAGACTGACGCTCTGATCGTGAGAAGCGGGACAAAAG 596
| ||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||
Sbjct 487 AAGATCTGAAGAAGAAAGTGGCGGAGAGTGACGCTCTGATCGTGAGAAGCGGAACTAAAG 428
Query 597 TGACGAGGGAAGTGTTTGAGGCGGCGAAGGGGCGGTTGAAAGTGGTCGGAAGAGCCGGAG 656
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 427 TGACGAGGGAAGTGTTTGAGGCGGCGAAGGGGAGGTTGAAAGTGGTCGGAAGAGCCGGAG 368
Query 657 TTGGGATTGACAATGTTGATCTGCAGGCAGCGACGGAGCACGGCTGTTTGGTGGTTAATG 716
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 367 TTGGGATTGACAATGTTGATCTGCAGGCGGCGACGGAGCACGGGTGTTTGGTGGTTAATG 308
Query 717 CTCCGACGGCTAATACGGTGGCCGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGG 776
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 307 CTCCAACGGCTAATACGGTGGCTGCTGCCGAACATGGAATTGCTTTGCTTGCTTCTATGG 248
Query 777 CACGTAACGTCGCTCAGGCCGACGCGTCTATTAAAGCCGG 816
|||||||||| |||||||||||||| ||||||||||||||
Sbjct 247 CACGTAACGTTGCTCAGGCCGACGCTTCTATTAAAGCCGG 208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104668136325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5