BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472050
Length=1577
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18330.2 | Symbols: EPR1, RVE7 | Homeodomain-like superfamil... 1836 0.0
AT3G10113.1 | Symbols: | Homeodomain-like superfamily protein ... 765 0.0
> AT1G18330.2 | Symbols: EPR1, RVE7 | Homeodomain-like superfamily
protein | chr1:6305971-6308010 REVERSE LENGTH=1636
Length=1636
Score = 1836 bits (994), Expect = 0.0
Identities = 1263/1387 (91%), Gaps = 41/1387 (3%)
Strand=Plus/Plus
Query 198 ATTAATCAGCTTTATGCTTTGTTTTGTTCGGTTTCAGGCTGGATTTGTGAGAATTACCGT 257
|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| ||
Sbjct 280 ATTAATCAGCTTTATGCTCTGTTTTGTTCGCTTTCAGGCTGGTTTTGTGAGAATTATAGT 339
Query 258 TGCAGCAAGAAAGCTTTTTAGATATTGTTTAATAATGGCCGCTGAGGATCGAAGTGAGGA 317
|||||||||||||| ||| ||||||| ||| ||||||||||||||||||||||||||||
Sbjct 340 TGCAGCAAGAAAGCGTTTCAGATATT-TTT--TAATGGCCGCTGAGGATCGAAGTGAGGA 396
Query 318 GCTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAACAAATCCTGAAAC 377
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 397 ACTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAGGAATTAATCCTGAAAC 456
Query 378 CAGTAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCA 437
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 CAGCAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGTACACAGTAACTAAGCA 516
Query 438 GAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGG 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 GAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAGCTATCAAGCTTTATGG 576
Query 498 TCGTGGTTGGCGTCATATCCAAGAACACATAGGTACGAAAACCGCTGTACAGATACGAAG 557
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 577 TCGTGGTTGGCGTCAAATCCAAGAACACATAGGTACAAAAACCGCTGTACAGATACGAAG 636
Query 558 CCATGCTCAGAAGTTTTTCTCCAAGATGGCTCAGGAACCTGACTA-TAGAAGTGAAGGGT 616
||||||||| ||||| ||||||||||||||||||||| ||||| | |||||||||||| |
Sbjct 637 CCATGCTCAAAAGTTCTTCTCCAAGATGGCTCAGGAAGCTGAC-AGTAGAAGTGAAGGAT 695
Query 617 CGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATC 676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 CGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAACCGGCACATCCTTATC 755
Query 677 CCCGGAAATCGCCTGTTCCGTATTCTCAGTCTCCTTCATCAAATTTGTCAGCTATGGAGA 736
| ||||||||||||||||| ||| ||||||||||| || |||||||||||||||||||||
Sbjct 756 CTCGGAAATCGCCTGTTCCATATACTCAGTCTCCTCCACCAAATTTGTCAGCTATGGAGA 815
Query 737 AAGGAGCCAAGTCTCCAACTTCAGTCCTGTCATCATTTGCTTCAGAGGATCAAATCAATA 796
||||| ||||||||||||| ||||| | ||||| |||| ||||||||||||| ||||||
Sbjct 816 AAGGAACCAAGTCTCCAACCTCAGTGTTATCATCGTTTGGTTCAGAGGATCAAGTCAATA 875
Query 797 GATGCTCTTCGCCTAATTCGTGTACCAGTGACATCCAATCCATTGGTGGAACTTCCATTG 856
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 876 GATGCTCTTCGCCTAATTCGTGTACCAGTGACATCCAATCCATTGGTGCAACTTCCATTG 935
Query 857 ATAAAAAGAATGACTATACAACATCCAAGCAATCCTT-CAAAGAGGATTCTGACATTGGT 915
||||||||||| |||| ||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 936 ATAAAAAGAATAACTACACAACATCCAAGCAA-CCTTTCAAAGATGATTCTGACATTGGT 994
Query 916 TCAACACCCATGTCAAGCATTACCCTTTTTGGGAAGATTGTCCTTGTCGTGGCAGAATCT 975
||||||||||| ||||||||||| ||||| ||||||||||||||||||| || |||||||
Sbjct 995 TCAACACCCATTTCAAGCATTACTCTTTTCGGGAAGATTGTCCTTGTCGCGGAAGAATCT 1054
Query 976 CATGACAAACCATCCTCTTACAGAGATGATGATGATCCTAAATCAA-TGACA-GATCAGG 1033
|| ||||||||||||||||| | ||||||||||| |||| ||| |||| | |||||
Sbjct 1055 CA---CAAACCATCCTCTTACA-A--TGATGATGATCTTAAA-CAAATGACGTG-TCAGG 1106
Query 1034 AGAATCACTACTCAGGGATCAAGAATTCTAGCTTGCATATTGACACTAATTTATCTCTTG 1093
||||||||||||||||||| | |||| ||| | |||||||||||||||||
Sbjct 1107 AGAATCACTACTCAGGGAT---G----CTAG-TTG-A------CACTAATTTATCTCTTG 1151
Query 1094 GGGTATGGGAAACGTCTTGTACCGGTTCTAATGCCTTTGGCTCAGTTACAGAAGTGTCAG 1153
| ||||||||||||| |||||| ||||||||||| |||||||| |||||||||| || |
Sbjct 1152 GTGTATGGGAAACGTTTTGTACTGGTTCTAATGCATTTGGCTCGGTTACAGAAGCATCTG 1211
Query 1154 AGAACTTGGAGAAGAGTGCAGAGCCGATAAGTTGTTCATGGAAACAGTTGACCTCCGTGG 1213
||||||||||||| ||||||||||||||||||| ||||||||||| ||| | |||| | |
Sbjct 1212 AGAACTTGGAGAAAAGTGCAGAGCCGATAAGTTCTTCATGGAAACGGTTAAGCTCCTTAG 1271
Query 1214 AAAAACAAGGATCATGTAATCCTGCAACTGCAAGTGGGTTCAGGCCATACAAGAGATGCC 1273
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1272 AAAAACAAGGATCTTGTAATCCTGTAAATGCAAGTGGGTTCAGGCCATACAAGAGATGCC 1331
Query 1274 TATCAGAAAGAGAAGTTACTTCATCATTCTCACTGGTAGCTTCAGAAGAACAGAAAAGCC 1333
|||||||||||||||| || |||||||| | |||||||||||||| ||| |||||||||
Sbjct 1332 TATCAGAAAGAGAAGTAACATCATCATTGACGCTGGTAGCTTCAGATGAAAAGAAAAGCC 1391
Query 1334 AAAGAAGAGCACGTATATGCTAGTTTTAGCCATTGTACAGTTTGGGGTCACTTTTGATGA 1393
||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1392 AAAGA-G--CACGTATATGCTAGTTTTAGCCATTGTACAGTTTGGAGTCAATTTTGATGA 1448
Query 1394 TTCGTCAACATTGTTTTAGCCATT-GCTGGATGACTTGGATCATAACATTCCACGAACCA 1452
| ||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1449 TCCGTGAACATTGTTTTAGCCATTTGCTGGGTGACTTGGATCATAGCATTCCACGAACCA 1508
Query 1453 AATCTTAA-TCCGAATTGGCAAGTGATTTTTACTTGTCTGCCACATGTAATTCTTGTAAT 1511
|||| ||| ||||| |||| ||||| |||| ||||||| |||||||||||||||||||||
Sbjct 1509 AATCCTAAATCCGAGTTGGTAAGTGGTTTT-ACTTGTCCGCCACATGTAATTCTTGTAAT 1567
Query 1512 GAAGTTTCTG-TGGCTGTCTCACATTAAAAAGACAGTTCTGTTTTTTCTCCATATACAAA 1570
||||||||| || ||||||||| |||| |||||| |||| |||||||| ||||||||||
Sbjct 1568 GAAGTTTCTCCTG-CTGTCTCACGTTAAGAAGACACTTCT-TTTTTTCTTCATATACAAA 1625
Query 1571 TTAGTTT 1577
| |||||
Sbjct 1626 TCAGTTT 1632
> AT3G10113.1 | Symbols: | Homeodomain-like superfamily protein
| chr3:3118043-3119391 REVERSE LENGTH=1011
Length=1011
Score = 765 bits (414), Expect = 0.0
Identities = 465/490 (95%), Gaps = 2/490 (0%)
Strand=Plus/Plus
Query 302 AGGATCGAAGTGAGGAGCTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAG 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 AGGATCGAAGTGAGGAACTAAGCAGCAATGTAGAAAATGGAAGTTGCAATTCCAATGAAG 115
Query 362 GAACAAATCCTGAAACCAGTAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGT 421
||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 116 GAATTAATCCTGAAACCAGCAGTCATTGGATTGAAAACGTTGTCAAGGTTAGGAAACCGT 175
Query 422 ACACAGTAACTAAGCAGAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 ACACAGTAACTAAGCAGAGAGAGAAGTGGAGTGAGGAAGAGCATGATAGGTTTCTTGAAG 235
Query 482 CTATCAAGCTTTATGGTCGTGGTTGGCGTCATATCCAAGAACACATAGGTACGAAAACCG 541
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 236 CTATCAAGCTTTATGGTCGTGGGTGGCGTCAAATCCAAGAACACATAGGTACAAAAACCG 295
Query 542 CTGTACAGATACGAAGCCATGCTCAGAAGTTTTTCTCCAAGATGGCTCAGGAACCTGACT 601
||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||
Sbjct 296 CTGTACAGATACGAAGCCATGCTCAAAAGTTCTTCTCCAAGATGGCTCAGGAAGCTGAC- 354
Query 602 A-TAGAAGTGAAGGGTCGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAA 660
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGTAGAAGTGAAGGATCGGTTAAAGCGATTGTGATCCCGCCTCCTCGTCCAAAGAGAAAA 414
Query 661 CCGGCACATCCTTATCCCCGGAAATCGCCTGTTCCGTATTCTCAGTCTCCTTCATCAAAT 720
||||||||||||||||| ||||||||||||||||| ||| ||||||||||| || |||||
Sbjct 415 CCGGCACATCCTTATCCTCGGAAATCGCCTGTTCCATATACTCAGTCTCCTCCACCAAAT 474
Query 721 TTGTCAGCTATGGAGAAAGGAGCCAAGTCTCCAACTTCAGTCCTGTCATCATTTGCTTCA 780
||||||||||||||||||||| ||||||||||||| ||||| | ||||| |||| ||||
Sbjct 475 TTGTCAGCTATGGAGAAAGGAACCAAGTCTCCAACCTCAGTGTTATCATCGTTTGGTTCA 534
Query 781 GAGGATCAAA 790
||||||||||
Sbjct 535 GAGGATCAAA 544
Score = 532 bits (288), Expect = 3e-150
Identities = 431/495 (87%), Gaps = 30/495 (6%)
Strand=Plus/Plus
Query 865 AATGACTATACAACATCCAAGCAATCC-TTCAAAGAGGATTCTGACATTGGTTCAACACC 923
||| |||| ||||||||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 544 AATAACTACACAACATCCAAGCAA-CCTTTCAAAGATGATTCTGACATTGGTTCAACACC 602
Query 924 CATGTCAAGCATTACCCTTTTTGGGAAGATTGTCCTTGTCGTGGCAGAATCTCATGACAA 983
||| ||||||||||| ||||| ||||||||||||||||||| || |||||||| ||||
Sbjct 603 CATTTCAAGCATTACTCTTTTCGGGAAGATTGTCCTTGTCGCGGAAGAATCTC---ACAA 659
Query 984 ACCATCCTCTTACAGAGATGATGATGATCCTAAATC-AATGACAG-ATCAGGAGAATCAC 1041
||||||||||||| | |||||||||||| |||| | |||||| | |||||||||||||
Sbjct 660 ACCATCCTCTTAC--A-ATGATGATGATCTTAAA-CAAATGAC-GTGTCAGGAGAATCAC 714
Query 1042 TACTCAGGGATCAAGAATTCTAGCTTGCATATTGACACTAATTTATCTCTTGGGGTATGG 1101
||||||||||| | ||| | |||||||||||||||||||||| ||||||
Sbjct 715 TACTCAGGGAT---G----CTA----G----TTGACACTAATTTATCTCTTGGTGTATGG 759
Query 1102 GAAACGTCTTGTACCGGTTCTAATGCCTTTGGCTCAGTTACAGAAGTGTCAGAGAACTTG 1161
||||||| |||||| ||||||||||| |||||||| |||||||||| || |||||||||
Sbjct 760 GAAACGTTTTGTACTGGTTCTAATGCATTTGGCTCGGTTACAGAAGCATCTGAGAACTTG 819
Query 1162 GAGAAGAGTGCAGAGCCGATAAGTTGTTCATGGAAACAGTTGACCTCCGTGGAAAAACAA 1221
||||||||||||||||||||||||| ||||||||||| ||| | |||| | |||||||||
Sbjct 820 GAGAAGAGTGCAGAGCCGATAAGTTCTTCATGGAAACGGTTAAGCTCCTTAGAAAAACAA 879
Query 1222 GGATCATGTAATCCTGCAACTGCAAGTGGGTTCAGGCCATACAAGAGATGCCTATCAGAA 1281
||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GGATCTTGTAATCCTGTAAATGCAAGTGGGTTCAGGCCATACAAGAGATGCCTATCAGAA 939
Query 1282 AGAGAAGTTACTTCATCATTCTCACTGGTAGCTTCAGAAGAACAGAAAAGCCAAAGAAGA 1341
|||||||| || |||||||| | |||||||||||||| ||| |||||||||||||| |
Sbjct 940 AGAGAAGTAACATCATCATTGACGCTGGTAGCTTCAGATGAAAAGAAAAGCCAAAGA-G- 997
Query 1342 GCACGTATATGCTAG 1356
||||||||||||||
Sbjct 998 -CACGTATATGCTAG 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77861045295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5