BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472088 Length=1923 Score E Sequences producing significant alignments: (Bits) Value AT1G18660.4 | Symbols: | zinc finger (C3HC4-type RING finger) ... 2638 0.0 > AT1G18660.4 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr1:6421117-6425880 FORWARD LENGTH=2089 Length=2089 Score = 2638 bits (1428), Expect = 0.0 Identities = 1556/1616 (96%), Gaps = 15/1616 (1%) Strand=Plus/Plus Query 1 TGTTCCGACCCAAAAATC----AG--GAAGAAGAAGATTGGCAAACAAAAAGGATTCACC 54 |||||||||| ||||||| || |||||||||||||| ||||||||||||||||||| Sbjct 10 TGTTCCGACCGAAAAATCAGGAAGAAGAAGAAGAAGATTGACAAACAAAAAGGATTCACC 69 Query 55 TTTAGTGACTGAGCTgagagagagagaTTGAA-G---aaaaaaaaaaaGAGTGAAGC-TT 109 ||||||||||||| ||||||| |||||||||| | |||||||||||| ||||||| || Sbjct 70 TTTAGTGACTGAG-TGAGAGAAAGAGATTGAAGGAAAAAAAAAAAAAAGGGTGAAGCTTT 128 Query 110 GGAGAGAGAATAACCACGTAGAGGTTTATAATCCGTGGTTGCAAACCAAGGACCCAGAAT 169 |||||||| ||||||||||||||| || |||||||||||||||||| ||||||||||||| Sbjct 129 GGAGAGAGGATAACCACGTAGAGGATTCTAATCCGTGGTTGCAAACGAAGGACCCAGAAT 188 Query 170 TTCTGGAATTTCTTCCGTT-GATCG-ATCACTCAGATGTCGAACGAAGAATCTCTTCCGG 227 ||||||||| |||| | || ||||| ||||||| ||||| |||||||| ||||||||| Sbjct 189 TTCTGGAATCTCTTGC-TTCGATCGAATCACTCTCATGTCTAACGAAGACTCTCTTCCGC 247 Query 228 CATTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 287 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 CTTTCACTTTGTTTGGTTTGGATGATGTCGAAAATTACGGTCTGGTCACTGAAGCAGACA 307 Query 288 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308 ATTCGTTACCTTTAGATATACACAATCAGGTTTTTCAACTTGTGGAGAAGGGAAACCAAT 367 Query 348 CATTCAAAGAGTCTCGCTTTGAAGAGGCAATTAGCAGTTATTCAAAGGCCAATTCTATTA 407 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 368 CATTCAAAGAGTCTCGCTTTGAAGAGGCTATTAGCAGTTATTCAAAGGCCAATTCTATTA 427 Query 408 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATTAGATTTGGCCAAT 467 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 428 AACCTCTTGACCCTATTGTTCTTGGCAATAGAAGTGCTGCTTATATAAGATTTGGCCAAT 487 Query 468 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 ATCTGAAGCAGAGATCTGCATCAATTTCTGAATATAAACCTCTGAATGGTTTTGATATGT 547 Query 528 CGATGCTTGGGGAACTTGCTCTTAAGGATGCTGATAAGCTGATGAATCTTCAAAGCAGTT 587 |||||||||| ||||||||||||||||||||||||||||| |||| |||||| ||||||| Sbjct 548 CGATGCTTGGTGAACTTGCTCTTAAGGATGCTGATAAGCTAATGAGTCTTCAGAGCAGTT 607 Query 588 CAGTGAAGTCATATACTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 647 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 608 TAGTGAAGTCATATATTACAAAGGCTTGTGCCCTCATGTTGCTAGAAAGATATGAGGTAG 667 Query 648 CACGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGATCCTCTCCGATCCA 707 | ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 668 CCCGTGACACTATCCTCTCAGGTCTACAGATTGATCCCTTTAGCGGTCCTCTACGATCCA 727 Query 708 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAAAGGCTG 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 728 ATCTTCAGGAATTGGAGAAAGTGATGCCTAATTCGATGCGTAAAACCCATGGAATGGCTG 787 Query 768 AGCGGTCTGATGACTTTGATTGCACTGTTTGCCTGAAATTGCTGTATGAACCTGCTACAA 827 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 788 AGCGGTCTGATGATTTTGATTGCACTGTTTGCCTGAAATTGCTGTACGAACCTGCTACAA 847 Query 828 CCCCATGTGGGCATACATTCTGCCGATCCTGCCTCTTTCAGTCAATGGATCGCGGCAACA 887 | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 848 CTCCATGTGGGCATACATTCTGCCGATCATGCCTCTTTCAGTCAATGGATCGCGGCAACA 907 Query 888 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 908 AATGTCCACTATGTCGAACTGTCATTTTTATGACTCCAAGAACATGCGCTGTCAGTGTGA 967 Query 948 CACTGAATAACATCATACAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1007 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 968 CACTGAATAACATCATAGAGAAAAACTTTCCAGAGGAGTATGCTGAAAGGAAATCAGAGC 1027 Query 1008 AAGACACTCTGGTCCACTTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATCA 1067 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | Sbjct 1028 AAGACACTCTGGTCCACCTAGGCAATGAAAGTATGCCCCTTTTCGTCATGGATGTGATAA 1087 Query 1068 TCCCCTGTCAAAAGTTGTCTCTTCACATATTTGAACCACGATATCGACTAATGGTGAGAA 1127 |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1088 TCCCCTGTCAGAAGTTGTCTCTTCATATATTTGAACCACGATATCGACTAATGGTGAGAA 1147 Query 1128 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCTGCGACAGGTTCTC 1187 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1148 GAATAATGGAAGGAAATCATCGGATGGGAATGGTAGCTCTTGATTCGGCGACAGGTTCTC 1207 Query 1188 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1208 CAGTGGATGTTGCTTGCGAAGTTGAAATCACAGAGTGTGATCCACTCCCGGATGGACGTT 1267 Query 1248 TTGTCTTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1307 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1268 TTGTCCTGGAGCTGGAAAGCCATAGAAGGTGCCGCATTGTAAAAGCTTGGGATCAAGATG 1327 Query 1308 GGTATCGTGTTGCAGAGGTTGAATGGGTGACAGATATACCACCACAAAGCGAGCAAGGGA 1367 | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1328 GATATCGTGTTGCAGAGGTTGAATGGGTGAAAGATATACCACCACAAAGCGAGCAAGGGA 1387 Query 1368 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1427 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1388 AAGCAGATCTGCGGGAACTGACGACCAGCGCAGCATCATTTGCTCGGTCATGGCTAGATA 1447 Query 1428 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAATTACTTCTAAATGTTG 1487 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1448 GAGCAAAGGAAGCAGCTAGACAAGGAGACAGAAGAAGACTTGAAATACTTCTAAATGTTG 1507 Query 1488 AATCTATGATACCAACGCCTCAAGATCCCGAACGCTTCAGTTTCTGGCTTGCCACATTGA 1547 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||| Sbjct 1508 AATCTATGATACCAACGCCTCAAGATCCCGAGCGCTTCAGTTTCTGGCTTGCTACACTGA 1567 Query 1548 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1568 CAGATAGGAGACCTTCAGAAAGATTGGAACTACTTCGGCTTCAGGATACTGGAGAG 1623 Score = 468 bits (253), Expect = 1e-130 Identities = 306/330 (93%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 1603 GTTTTACCAGTCCTTTTCTTTTGATTATTGAAAC-TTGTTGTTGCAGAGAATAAAGCGCG 1661 |||| |||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1668 GTTTCACCAGTCCCTTTCTTTTGATTGTTGAAACTTTGTTGTTGCAGAGAATAAAGCGCG 1727 Query 1662 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCATCATCA 1721 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 1728 GGTTGATATATCTCCGATCAGTAGAAAGAGGATGCAGAATGCAATGAACTGGCAGCATGA 1787 Query 1722 GGGCATTGTATTGCCGATTGAACTACAGAGATAAAC-T------TGTTCATAAGAAGGTT 1774 ||||||||||||||| || |||||||||||||||| | |||||||||||||||| Sbjct 1788 TGGCATTGTATTGCCGGTTAAACTACAGAGATAAACTTGGGACCTGTTCATAAGAAGGTT 1847 Query 1775 GACAAAAACA-TTATTCATGATTAAAGGAATACATAAGATAGAGATCCATGTAGGATCGC 1833 ||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1848 GAC-AAAACATTTATTCATGATTAAAGGAATACATAAGATAGAGATCCTTGTAGGATCGC 1906 Query 1834 TATCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGAGTGTATTTTACTTAATT 1893 | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 1907 TGTCATCCTTTGTCGGATCCATTGTTGTAGATTTTGTTTGCGACTGTATTTTATTTAATT 1966 Query 1894 ACCATATTCTTCATGATGCAACTGCAGCAA 1923 |||||||||||||| ||||||||| ||||| Sbjct 1967 ACCATATTCTTCATTATGCAACTGTAGCAA 1996 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 95230433865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5