BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472098 Length=659 Score E Sequences producing significant alignments: (Bits) Value AT1G18730.1 | Symbols: NDF6 | NDH dependent flow 6 | chr1:64605... 1000 0.0 AT1G18735.1 | Symbols: | other RNA | chr1:6461232-6461752 REVE... 122 3e-27 > AT1G18730.1 | Symbols: NDF6 | NDH dependent flow 6 | chr1:6460598-6462224 FORWARD LENGTH=672 Length=672 Score = 1000 bits (541), Expect = 0.0 Identities = 605/636 (95%), Gaps = 4/636 (1%) Strand=Plus/Plus Query 1 CTCCACTGACACCATCAAGAAGTAACAATGGCTGAAGCTTTCACAAGTTCCACCTTCACA 60 ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 CTCCATTGCCACCATCAAGAAGTAACAATGGCTGAAGCTTTCACAAGTTTCACCTTCACA 60 Query 61 AATCTTCATATCCCTTCTTCCTCCAGTCACTCGCCTAAGCAGATTTCAGGACCAAATCAT 120 ||||||||||| |||||||||| || ||||||||| ||||||| ||||||||| |||||| Sbjct 61 AATCTTCATATTCCTTCTTCCTACAATCACTCGCCGAAGCAGAATTCAGGACCGAATCAT 120 Query 121 GGATATTGGCTATCTATGAAAGTTAATGAGAAGAGGGAAAAGAATTTGATGAGAGGAAGA 180 |||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| Sbjct 121 GGATATTGGCTATCTAAGAATGTTAATGAGAAGAGGGAAAGGAATTTGATGAGAGGAAGC 180 Query 181 TTATGTGTAAGAAAGGCATTGCCACATGATTTGCCATTAATGGCAGTGATGGTTCAACAA 240 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 181 TTATGTGTAAGAAAGGCATTGCCACATGATTTGCCATTAATGGCTGTGATGGTTCAACAA 240 Query 241 ATAGAAGGAATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAGTGATAAAGCT 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATAGAAGGAATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAGTGATAAAGCT 300 Query 301 ATCAAGAATGTCTATATGTTCTACATCATGTTCACTTGTTGGGGATGTTTGTACTTCGGT 360 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 ATCAAGAATGTTTATATGTTCTACATCATGTTCACTTGTTGGGGATGTTTGTACTTCGGT 360 Query 361 TCCGCAAAAGATCCATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGGGATGGAACT 420 || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 361 TCAGCAAAAGATCCATTCTACGACTCAGAGGAGTACCGTGGAGATGGAGGGGATGGAACT 420 Query 421 GGATATTGGGTCTATGAAACTCAAGAAGACATAGAAGAGAAAGCAAGAGCAGAGCTATGG 480 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 421 GGATATTGGGTCTATGAAACTCAAGAAGACATAGAAGAGAAAGCAAGAGCGGAGCTATGG 480 Query 481 CGTGAAGAACTTATTGAAGAAATTGAACAGAAAGTTGGTGGCTTAAGAGAGCTTGAAGAA 540 |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 481 CGTGAAGAACTTATCGAAGAAATTGAACAGAAGGTTGGTGGCTTAAGAGAGCTTGAAGAA 540 Query 541 GCTGTTACTAAGTAGAAAACTAACTTGTAAATCATAAATCTAATTCACATACACAT-ATA 599 |||||||||||||||||||||||||||| ||||||||| | | || |||||||||| ||| Sbjct 541 GCTGTTACTAAGTAGAAAACTAACTTGTGAATCATAAACC-ACTTTACATACACATTATA 599 Query 600 T-TTTGTCTTATATGAGTCATACAACATtatatata 634 | ||| |||||||| |||||| |||||||||||||| Sbjct 600 TATTT-TCTTATATCAGTCATGCAACATTATATATA 634 > AT1G18735.1 | Symbols: | other RNA | chr1:6461232-6461752 REVERSE LENGTH=442 Length=442 Score = 122 bits (66), Expect = 3e-27 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 370 GATCCATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGGGATGGAACTGGATATTGG 429 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 356 GATCCATTCTACGACTCAGAGGAGTACCGTGGAGATGGAGGGGATGGAACTGGATATTGG 297 Query 430 GTCTATGAAACT 441 |||||||||||| Sbjct 296 GTCTATGAAACT 285 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31848449198 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5