BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472100
Length=2168
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18740.1 | Symbols: | Protein of unknown function (DUF793) ... 2170 0.0
AT1G74450.1 | Symbols: | Protein of unknown function (DUF793) ... 466 4e-130
AT1G18745.1 | Symbols: | | chr1:6465487-6466454 REVERSE LENGT... 409 7e-113
> AT1G18740.1 | Symbols: | Protein of unknown function (DUF793)
| chr1:6463922-6465476 FORWARD LENGTH=1555
Length=1555
Score = 2170 bits (1175), Expect = 0.0
Identities = 1380/1474 (94%), Gaps = 34/1474 (2%)
Strand=Plus/Plus
Query 1 ATCATCATCACTCTCTCTTAATCCAAC--a-aaaaaaaaaG-C--CTT-TTATTTTCCAA 53
|||||||||||||||||| |||||||| | |||||||||| | ||| || |||| |||
Sbjct 80 ATCATCATCACTCTCTCTCAATCCAACAAAGAAAAAAAAAGTCTTCTTCTTTTTTTACAA 139
Query 54 GTCTGAGAATTTTCTACAGAAACACAAATCTGGTTTCCTTTT-CGA-TATTGCATCTGTT 111
|||||||||||||||||||||||| |||||| | || |||| | | | |||||||||||
Sbjct 140 GTCTGAGAATTTTCTACAGAAACAAAAATCT-GATTGTTTTTCCCACT-TTGCATCTGTT 197
Query 112 CTGAGGATGCCAGCTACGGATTTTCAAGGATCATTTGGAAGGTCGTTGCTAAGTTTACGG 171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 198 TTGAGGATGCCAGCTACGGATTTTCAAGGATCATTTGGAAGGTCGTTGCTAAGTTTACGG 257
Query 172 CGAGACCAAGTTGACTCAACAACAGTCGTCGCCGGAAGTAGTAGCCACCACGAGCCAAGC 231
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 258 CGAGACCAAGTTGACTCATCAACAGTCGTCTCCGGAAGTAGTAGCCACCACGAGCCAAGC 317
Query 232 AACATGGAGGTTGAGCTAGATTCGTTTCAAAGACAAGTCGCCGAGAAATTCATCGATCTC 291
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 318 ACCATGGAGGTTGAGCTAGATTCGTTTCAAAGACAAGTCGCTGAGAAATTCATCGATCTC 377
Query 292 AACGCCTCTTCAAACGACCTTCTCTCTCTCGAATGGATCGGGAAGCTTCTTGATTCTTTC 351
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 378 AACGCTTCTTCAAACGACCTTCTCTCTCTCGAATGGATCGGAAAGCTTCTTGATTCTTTC 437
Query 352 CTCTGTTGTCAAGAAGAGTTTCGAGCTATTGTATTCAACCACCGATCTCAGATCTC-AAA 410
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 438 CTCTGTTGTCAAGAAGAGTTTCGAGCTATCGTATTCAACCACCGATCTCAGATCTCTAAA 497
Query 411 GTCTCCGATGGACCGTTTGATTTCAGATTACTTCGAACGGAGTATCAAAGCTCTCGATGT 470
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 498 -TCTCCGATGGACCGTTTGATTTCAGATTACTTCGAACGGAGCATCAAAGCTCTAGATGT 556
Query 471 CTGTAACGCAATCCGCGACGGAATCGAACAGATCCGTCAATGGGAGAAACTTGCCGACAT 530
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 557 CTGTAACGCCATCCGCGACGGTATCGAACAGATCCGTCAATGGGAGAAACTTGCCGATAT 616
Query 531 CATTATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAAGGACAGCTCCGGCGAGCTAA 590
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 617 TGTGATCTCTGCTTTAGATAGTCACCGTCCGATCGGAGAAGGTCAGCTCCGGCGAGCTAA 676
Query 591 GAAAGCTCTGATTGATTTAGCAATCGGAATGCTCGACGAGAAAGATCATCCTTCTGGAAC 650
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 677 GAAAGCTCTGATTGATTTAGCAATCGGAATGCTTGACGAGAAAGATCATCCTTCTGGAAC 736
Query 651 CAATCTAGCTCATCGGAACCGTTCATTCGGAAGAGTCAAAGACAGTCACCACCGTTCGAT 710
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CAATCTAGCTCATCGTAACCGTTCATTCGGAAGAGTCAAAGACAGTCACCACCGTTCGAT 796
Query 711 TGGACATTTCAGATCTCTTTCCTGGAGTGTTTCAAGATCGTGGTCAGCTTCTAAGCAATT 770
||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 797 TGGTCATTTCAGATCTCTTTCTTGGAGTGTTTCAAGATCATGGTCAGCTTCTAAGCAGTT 856
Query 771 ACAAGCTTTGGCTAATAACTTAGCAACGCCTAGACCAAACGACGTCGTTGCGAGCAATGG 830
||||||||| || | |||||| ||||||||| |||||||||| |||||||| ||||||||
Sbjct 857 ACAAGCTTTAGCGAGTAACTTGGCAACGCCTCGACCAAACGATGTCGTTGCTAGCAATGG 916
Query 831 TTTAGCTGTACCGGTTTACACCATGACTTCGGTTTTGCTTTTTGTGATGTGGGTTTTGGT 890
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 917 TTTAGCTGTACCGGTTTACACAATGACTTCGGTTTTGCTTTTTGTGATGTGGGTTTTGGT 976
Query 891 AGCTGCGATTCCTTGTCAAGACCGTGGATTGCAAGTTAACTTCTTTGTCCCTAGGCATTT 950
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 977 AGCTGCGATTCCTTGTCAAGACCGTGGATTGCAAGTTAACTTCTTTGTGCCTAGGCATTT 1036
Query 951 CCAATGGGCAGCTCCGGTTATGTCGTTGCACGATAAGATTGTTGAGGAATCTAAGAGACG 1010
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1037 CCAATGGGCAGCTCCGGTTATGTCGTTGCACGATAAGATTGTTGAGGAATCTAAGAGAAG 1096
Query 1011 AGATAGGAAGAATTGTTGTGGTTTGCTTAAGGAGATTGATATGATTGAGAAGAGTTCGAG 1070
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1097 AGATAGGAAGAATTGTTGTGGTTTGCTTAAGGAGATTGATAGGATTGAGAAGAGTTCGAG 1156
Query 1071 GTTGATGAATGAATTGATCGATTCGATTCATTTCCCGTTGAATGATCAGAAGGA-GATTG 1129
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |||
Sbjct 1157 GTTGATGAATGAATTGATCGATTCGATTCATTTCCCGTTGAATGATGACAAGGAAG-TTG 1215
Query 1130 AGGTGAAACAGAGAGTTGATGAGCTTGTTCAGGTTCGTGAAGCTTTGA-AAGATGGTTTG 1188
||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 1216 AGGTGAAACAGAGAGTTGATGAGCTTGTTCAAGTTCGTGAAGCTTTGAGAA-ATGGTTTG 1274
Query 1189 GATCCGTTTGAGAGGAAAGTTAGAGAAGTTTTCCATCGGATTGTGAGAAGCCGAACCGAG 1248
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct 1275 GATCCGTTTGAGAGGAAAGTAAGAGAAGTTTTCCATCGGATTGTGAGAAGCAGAACTGAG 1334
Query 1249 AGTCTTGATTCTCTTTGATCTTGCACATGTTTGTCCGAATATGATCA-T-ATT--TGGAt 1304
||||||||||||||||||||||||||||||||||| ||||||||| | | ||| || |
Sbjct 1335 AGTCTTGATTCTCTTTGATCTTGCACATGTTTGTCTGAATATGATGAATGATTCATG--T 1392
Query 1305 tt---ttttttgttttcttcttcttcttctctatttatcctttttAATCACTTGTAAAAA 1361
|| ||||||||||| || || || ||||||||||||||||||| ||||||||||||||
Sbjct 1393 TTGGATTTTTTGTTTTGTTTTTGTTTTTCTCTATTTATCCTTTTTGATCACTTGTAAAAA 1452
Query 1362 AGAAACTCAAAGAGTGTAGAAGTGTCATCTTCTTAACTCTTTGTGATGCTTATAGTGATT 1421
||||||||||||||||||||||||||||||||| || || |||||||| |||||||||
Sbjct 1453 AGAAACTCAAAGAGTGTAGAAGTGTCATCTTCT---CT-TT-GTGATGCTGATAGTGATT 1507
Query 1422 ATGTTCTT-T--GCGAAGCTACTTGCTTAGTTTG 1452
||||||| | | | |||||||||||||| |||
Sbjct 1508 CTGTTCTTCTTTGTGTAGCTACTTGCTTAGATTG 1541
> AT1G74450.1 | Symbols: | Protein of unknown function (DUF793)
| chr1:27982509-27984280 FORWARD LENGTH=1772
Length=1772
Score = 466 bits (252), Expect = 4e-130
Identities = 814/1073 (76%), Gaps = 88/1073 (8%)
Strand=Plus/Plus
Query 244 GAGCTAGATTCGTTTCAAAGACAAGTCGCCGAGAAATTCATCGATCTCAA--CGCCT-CT 300
||||| | ||||||||| ||| |||| || |||| || ||||||||||| || || |
Sbjct 349 GAGCTTGTTTCGTTTCAGAGAAAAGTTGCTGAGAGGTTTATCGATCTCAATGCGTCTAGT 408
Query 301 T-CAAACGACCTTCTCTCTCTCGAATGGATCGGGAAGCTTCTTGATTC-TTTCCTCTGTT 358
| || || || || |||||||||||| | ||||||||||||||||| ||| || | ||
Sbjct 409 TGTGAA-GATCTACTGTCTCTCGAATGGGTTGGGAAGCTTCTTGATTCGTTT-CTATCTT 466
Query 359 GTCAAGAAGAGTTTCGAGCTATTGT-ATTCAACCACCGATCTC-A-GA-T-CTCAAAGTC 413
|||||||||||||||| | || || | |||| || || | || | || | || ||| |
Sbjct 467 GTCAAGAAGAGTTTCGTTCCATAGTCA-TCAATCATCG-T-TCGATGATTACT-AAA-CC 521
Query 414 TCCGATGGACCGTTTGATTTCAGATTACTTCGA-ACGGAGTATCAAAGCTCTCGATGTCT 472
|||||||| || ||| |||||||||||||||| | | ||| | |||||||| ||||| |
Sbjct 522 ACCGATGGATCGATTGGTTTCAGATTACTTCGAGA-GAAGTGTTAAAGCTCTTGATGTTT 580
Query 473 GTAACGCAATCCGCGACGGAATCGAACAGATCCGTCAATGGGAGAAACTTGCCGACATCA 532
||||||| || || || || | |||||||||||||||||| |||||||| ||| ||
Sbjct 581 GTAACGCGATTCGTGATGGTGTTGAACAGATCCGTCAATGGCAGAAACTTATCGAGATTG 640
Query 533 TTATCTCTGC-TT---------T-----A-G-A-TAGT--C-ACCGTCCGATCGGAGAAG 571
| || | ||| || | | | | |||| | | | || | |||||||
Sbjct 641 TAATTTGTGCTTTCAACAACAATGGAGGAGGAAGTAGTGGCAAGAGACCTCTTGGAGAAG 700
Query 572 GACAGCTCCGGCGAGCTAAGAAAG-CTCTGATTGATTTAGCAATCGGAATGCTCGACGAG 630
| ||| | || || || || ||| || ||||||| ||||| || || ||||| || |||
Sbjct 701 GTCAGTTTCGTCGTGC-GAGGAAGACTTTGATTGAGTTAGCTATTGGTATGCTTGATGAG 759
Query 631 AAAGA-TCATCCTTCTGGAAC-CAATCTAG-CT---CATCGGAACCGTTCATTCGGAA-G 683
|| || |||| ||||| | | || | | | || ||||| ||||| || || |||| |
Sbjct 760 AAGGATTCAT-CTTCT--AGCTCAGTGTCGTCTCAGCATCGTAACCGGTCTTTTGGAAGG 816
Query 684 AGTCAAAGA-CAG--TCACCACCGTTCGATTGGACATTTCAGATCTCTTTCCTGGAGTGT 740
| ||| || ||| ||| ||||| | || || |||||||| || ||||| ||||||||
Sbjct 817 A-ACAAGGAGCAGCTTCATCACCGAACAATCGGGCATTTCAGGTCGCTTTCTTGGAGTGT 875
Query 741 TTCAAGATCGTGGTCAGCTTCTAAGCAATTACAAGCT-TTGGCTAATAACTTAGCAACGC 799
||| ||||| ||||| |||||||||||| |||||||| |||| || |||||||| ||||
Sbjct 876 TTCGAGATCATGGTCTGCTTCTAAGCAACTACAAGCTATTGG-AAACAACTTAGCTACGC 934
Query 800 CTAGACCAAACGACGTCGTTGCGAGC-AATGGT-TTAGCTGTACCGGTTTACACCATGAC 857
|| || | | ||| | ||| | | |||||| ||| ||| |||||||| || |||||
Sbjct 935 CTCGAGCTAGTGACATTACTGC-AACTAATGGTCTTA-TTGTTCCGGTTTATACAATGAC 992
Query 858 TTCGGTTTTGCTT-TTTGTGATGTGGG-TTTTGGTAGCTGCGATTCCTTGTCAAGACCGT 915
| |||| ||| || ||||||||||||| || |||||||||||||||||||||||| |
Sbjct 993 TACGGTATTG-TTGTTTGTGATGTGGGCACTT-GTAGCTGCGATTCCTTGTCAAGACAGA 1050
Query 916 GGATTGCAAGTTA-ACTTCTTTGTCCCTAGGCATTTCCAATGGGCAGCTCCGGTT-ATGT 973
|| ||||||| || | ||| ||| |||||| ||| |||||||| || | | ||| ||||
Sbjct 1051 GGTTTGCAAG-TACATTTCAATGTTCCTAGGAATTACCAATGGGGAGGTTC-GTTGATGT 1108
Query 974 CGTTGCACGATAAGATTGTTGAGGAATCTAAG-AGACGAGATAGGAAGAATTGTTGTGGT 1032
|||||||||||| ||| |||||||||| ||| ||| |||| ||||||||| |||||
Sbjct 1109 CGTTGCACGATAGGATCATTGAGGAATCGAAGAAGA-GAGAGAGGAAGAATACATGTGGG 1167
Query 1033 TTGCTT-AAGGAGATTGAT-ATGATTGAGAAGAGTTCGAGGTTGATGAATGAATTGATCG 1090
||| || || |||||| || | | ||||||||| ||| || ||||||||||| ||| | |
Sbjct 1168 TTG-TTGAAAGAGATTCATCA-GTTTGAGAAGACTTCAAGATTGATGAATGAGTTGGTTG 1225
Query 1091 ATTC-GATTCA-TTTCCCGTTGAATGATCAGAAGGAGATTGAGGTGAAACAGAGAGTTGA 1148
|||| | |||| ||| || ||| ||| |||| ||||| || |||| | ||||||||||
Sbjct 1226 ATTCTG-TTCAGTTT-CCTTTGTCTGAAGAGAAAGAGATGGAAGTGAGAGAGAGAGTTGA 1283
Query 1149 TGAGCTT-GTTCAGGTTCGTGAAGCTTTGAAAG-ATGGTTTGGATCCGTTTGAGAGGAAA 1206
|| || | || ||| || |||||| ||| ||||||||||||||||||||||||||
Sbjct 1284 GGA-ATTGGGGAAGCTTCAAGAGGCTTTG-AAGAATGGTTTGGATCCGTTTGAGAGGAAA 1341
Query 1207 GTTAGAGAAGT-TTTCCATCGGATTGTGAGAAGCCGAACCGAGAG-TCTTGAT 1257
|| || ||||| |||| |||||||||| |||||| |||| || || |||||||
Sbjct 1342 GTGAGGGAAGTGTTTC-ATCGGATTGTAAGAAGCAGAACAGA-AGGTCTTGAT 1392
> AT1G18745.1 | Symbols: | | chr1:6465487-6466454 REVERSE LENGTH=968
Length=968
Score = 409 bits (221), Expect = 7e-113
Identities = 277/302 (92%), Gaps = 11/302 (4%)
Strand=Plus/Minus
Query 1867 GATAATGCATCAGAGAGATTCCCATCTAGACATTAGTCATCATTCTCATCTCCTAACTAG 1926
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 365 GAT-ATGCATCAGAGAGATTCCCATCTAGACATTAGTCATCATTCTCATCTCCTAACAAG 307
Query 1927 GAGACTCTGATGTCCCTGTCTTTTCATCATCACTTGCGTTAATCAGACAACCAAATCAAA 1986
|||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 306 GAGATTCTGATGTCCCTGTCTTTTCATCATCACTTGCATAAATCAGGCAACCAAATCAAA 247
Query 1987 GCAGAAACTAGAAGAGCTACGAAAACCAAATCATTAATAAGCTCAGAGAGTCCAGAGTAA 2046
||||| ||||||||||||| |||||||||||||||||||||||| ||| || | |||||
Sbjct 246 TCAGAAGCTAGAAGAGCTACCAAAACCAAATCATTAATAAGCTCAAAGA-TC-ACAGTAA 189
Query 2047 AACAAGAGAAATCAGATGTGTAAAGAGAAGGaaaaaaaaTGCCTCAGAGTTGAttttttt 2106
|| |||||||| |||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 188 AATAAGAGAAACCAGATGTGTAAAGAGA-G-AGAAAAAATGCCTCAGAGTTGATTTTTTT 131
Query 2107 tCCTAGAGAGTAGAGACGCATCTCTCAAAGTATATTTAACACCATCACAGGCATCAAAAT 2166
| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 TTC--G----TAGAGACGCATCTCTCAAAGTATATTTAACACCATCACAGGCATCAAAAT 77
Query 2167 CA 2168
||
Sbjct 76 CA 75
Score = 329 bits (178), Expect = 6e-89
Identities = 329/396 (83%), Gaps = 34/396 (9%)
Strand=Plus/Minus
Query 1486 GTAACAAATACTTCATTGAATATCAAAGATTACATTCAAGAAACAAAAGAATCTTTATTG 1545
||| ||||||||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 968 GTATCAAATACTTCATTGAATTTGAAAGATTACATTCAAGAAACAAATGAATCTTTATTT 909
Query 1546 AGAGAAGAGATTCAACTATCGGGTATGTTTTACAACATACAAA--AA--TC-TAC--AA- 1597
||||||||| |||||||| |||| |||||||| | || |||| || | ||| ||
Sbjct 908 AGAGAAGAGGTTCAACTAAAGGGTCTGTTTTAC-A-ATTCAAATGAAGCACATACAAAAT 851
Query 1598 C-ACA-ATAAACTTCAGTTTCTCATCTAATCTTCAAAATCTTCTGTTTTCTTGAGTCCAG 1655
| | | |||| ||| | |||||||||||||||||| ||||||||| | |||||||||||
Sbjct 850 CTAGACATAACCTTAAATTTCTCATCTAATCTTCACAATCTTCTGCTGGCTTGAGTCCAG 791
Query 1656 CTTCATGTTGGTAACGTCCTACTTCATTTCTTGCAAGTGATTCTTCCTGCAAATAGAGCT 1715
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 790 CTTCATGTTTGTGACGTCCTACTTTATTTCTTGCAAGTGATTCTTCCTGCAAATAGAGCT 731
Query 1716 -A--TGA--T-----TAAC-GATTAG--A--A---CAGGACAAACATCAGTTGTAGACAA 1757
| ||| | ||| |||||| | | ||| |||||||| ||||||||||
Sbjct 730 CAAATGAAATCCAAATAAATGATTAGGGATTAGAACAGAACAAACATTTGTTGTAGACAG 671
Query 1758 TTTTAATCAAGGTTTGCCTCAGAAATAAGTGATACTCATCACTGAAAA-TCTGATAATAC 1816
| || | | ||||||||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 670 TATTCA-C--GGTTTGCCTCAGACATAAGTGATATTCATCACTGAAAAATCTGATAATAC 614
Query 1817 GTGCAATTGTTAAGGCACATCATTGGCAGAACCAAC 1852
||||||||||| |||||||||||||||| |||||||
Sbjct 613 GTGCAATTGTTTAGGCACATCATTGGCAAAACCAAC 578
Score = 73.1 bits (39), Expect = 1e-11
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Minus
Query 1872 TGCATCAGAGAGATTCCCATCTAGACATTAGTCATCATT 1910
|||||||||||||||||||||||||||||||||||||||
Sbjct 524 TGCATCAGAGAGATTCCCATCTAGACATTAGTCATCATT 486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107529567390
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5