BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472123
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19000.1 | Symbols: | Homeodomain-like superfamily protein ... 1471 0.0
AT1G74840.1 | Symbols: | Homeodomain-like superfamily protein ... 209 5e-53
> AT1G19000.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:6560795-6562786 REVERSE LENGTH=1322
Length=1322
Score = 1471 bits (796), Expect = 0.0
Identities = 925/987 (94%), Gaps = 10/987 (1%)
Strand=Plus/Plus
Query 1 AGATCCACTCACACCTCGTCTCCTTATTTGTACGGTTCTTATTTCGAAAGGGTAAAAACC 60
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1 AGATCCACTCACACCTCGTCTCCTAATCTGTACGGTTCTTATTTCGAAAGGGTAAAAACC 60
Query 61 AAAAGCGACGCAAAGGGCAAAATCGGAAAAAGTG-TTAATTTATGGCCGCCGTAAGTAGC 119
|||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 61 AAAAGCGACGCAAAGGGCAAAATCGGAAAAAGTGTTTTATTTATGGCCGCCGTTAGTAGT 120
Query 120 TCGTCGGAGACCGGAGACTGTGGCGCAACCGGG-AAGAGAGATGAGATCATGTTGTTCGG 178
|||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||
Sbjct 121 TCGTCGGAGACCGGAGACTGCGGCGTTA-CGGGAAAGAGAGATGAGATCATGTTGTTCGG 179
Query 179 AGTTAGAGTTGTTGTTGATCCGATGAGAAAGTGTGTGAGTTTGAACAATCTCTCTGATTA 238
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGTTAGAGTCGTGGTTGATCCGATGAGAAAGTGTGTGAGTTTGAACAATCTCTCTGATTA 239
Query 239 TGAAAAGTCTTCGCCGGAAGATGAGATCCCTAAGATAGTTGTCGCCGGAGCTGGAGATGG 298
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 240 TGAAAAGTCTTCTCCGGAGGATGAGATCCCTAAGATAGTCACCGCCGGAGCTGGAGATGG 299
Query 299 TGAAGATAAGAACGAAGCTGATGCGAAGGTGATTTTCGCCGACGGTTACGCCTCCGCCAA 358
|||||||||||||||| | ||||||| ||||||| |||| ||||||||||||||||||||
Sbjct 300 TGAAGATAAGAACGAAACGGATGCGACGGTGATTGTCGCTGACGGTTACGCCTCCGCCAA 359
Query 359 TGACGCTGTCCAGATTTCGTCTTCTTCCGGCGGGAGGAAACGAGGGATTCCATGGACAGA 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 360 TGACGCTGTCCAGATTTCGTCTTCTTCCGGCGGGAGGAAACGAGGGGTTCCATGGACAGA 419
Query 419 GAATGAGCACAAGAGGTTCTTGATTGGGTTACAGAAAGTAGGAAAAGGAGATTGGAAAGG 478
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 GAACGAGCATAAGAGGTTCTTGATTGGGTTGCAGAAAGTAGGAAAAGGAGATTGGAAAGG 479
Query 479 AATATCAAGAAACTTTGTGAAGAGTAGGACTCCTACTCAAGTAGCTAGTCACGCTCAGAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 AATATCAAGAAACTTTGTGAAGAGTAGGACTCCTACTCAAGTAGCTAGTCATGCTCAGAA 539
Query 539 ATACTTCCTCCGACGAACCAACCTCAATCGTCGTAGGCGAAGATCTAGCCTTTTCGATAT 598
||||||||||||||||||||||||||| ||||| | |||||||||||||||| |||||
Sbjct 540 ATACTTCCTCCGACGAACCAACCTCAACCGTCGCCGAAGAAGATCTAGCCTTTTTGATAT 599
Query 599 CACTACTGAGACGGTCACAGAAATGCCCATGGAGCAAGATCCTACTCAGGAGAACTCACC 658
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 CACTACTGAGACGGTTACAGAAATGGCCATGGAGCAAGATCCTACTCAGGAGAACTCACC 659
Query 659 ACCACCTGAAACCAACACCAGCTCTGGACATCAAGTTATGCAAGTTTTTCCTGAAGTTGC 718
|| |||||||||||||| |||||||||||| |||| |||||||||||| |||| |
Sbjct 660 ACTACCTGAAACCAACATCAGCTCTGGACAGCAAGCGATGCAAGTTTTTACTGA-----C 714
Query 719 AGTGCCGACAAAAACTGAGAATGCACCACAGACATTTCATATCAATGATCCATATCTGGT 778
||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||
Sbjct 715 -GTGCCGACAAAAACTGAGAATGCACCAGAGACATTTCATCTCAACGATCCATATCTGGT 773
Query 779 CCCAGTAACCTTCCAAGCAAAGCCTGCATTCAATCTAAACACAGATGCTGCTCCACTTTC 838
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 774 TCCAGTAACCTTCCAAGCAAAGCCAACATTCAATCTAAACACAGATGCTGCTCCACTTTC 833
Query 839 TCTCAACCTTTCTCTGGCCTCCTCATTTAATCTTAACGAGCAACCCAACTCAAGACACTC 898
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 834 TCTCAACCTTTGTCTGGCATCCTCATTTAATCTTAACGAGCAACCCAACTCAAGACACTC 893
Query 899 AGCTTTCGCGATGATGCCAAGCTTCAGCGATGGAGATAGCAATAGCAGCATCATCAGAGT 958
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGCTTTCACGATGATGCCAAGCTTCAGCGATGGAGATAGCAATAGCAGCATCATCAGAGT 953
Query 959 TGCTTAGACCTTAAAATCCAAGGTGAA 985
|||||||| |||||| |||||| |||
Sbjct 954 TGCTTAGAGCTTAAAC-CCAAGGGGAA 979
Score = 359 bits (194), Expect = 5e-98
Identities = 239/258 (93%), Gaps = 13/258 (5%)
Strand=Plus/Plus
Query 1174 aaaaaaaa-aGAACAATAACAGAGGAAGGCTAT--AGA--GATGGACAAACTATGTTTAG 1228
|||||||| ||||||| |||||||||||||||| ||| |||||||||||| ||| |||
Sbjct 980 AAAAAAAACAGAACAAAAACAGAGGAAGGCTATAGAGATTGATGGACAAACTGTGTCTAG 1039
Query 1229 GGTTCTTCATCATCTGTTGTTTGTTTGTAAAACTCTCTGGCCACACACACTGTTATGAGT 1288
||| ||||||||||| |||||||||||||||||||| | | |||||||||||||||||||
Sbjct 1040 GGTGCTTCATCATCT-TTGTTTGTTTGTAAAACTCT-T-GTCACACACACTGTTATGAGT 1096
Query 1289 CATTTTCTTCTGTGTGTGTTTTGTTTTGTGGT-ATGTAAGTTAAAAACAAGTCGTGATTC 1347
|||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1097 CATTTTCTGCTGTGTGTGTTTTGTTTTGTGGTGATGTAAGTTAAAAACAAG-CGTGATTC 1155
Query 1348 TCATGTGGCCCATCTCAATCAATGGTTGGTGATTTGTGGGGTTTTTAGGCTTTT--AT-A 1404
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1156 TCATGTGGCCCATCTCAATCAATGGTTGGTGATTTGTGGGGTTTTTAGGCTTTTCTATTA 1215
Query 1405 TCTTATCTTTTGGGGATA 1422
||||||||||||||||||
Sbjct 1216 TCTTATCTTTTGGGGATA 1233
> AT1G74840.1 | Symbols: | Homeodomain-like superfamily protein
| chr1:28115897-28117405 REVERSE LENGTH=1190
Length=1190
Score = 209 bits (113), Expect = 5e-53
Identities = 190/227 (84%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 392 GAGGAAACGAGGGA-TTCCATGGACAG-AGAATGAGCACAAGAGGTTCTTGATTGGGTTA 449
|||||||||| ||| |||||||||| | |||| || |||||| ||||||| ||||| |
Sbjct 361 GAGGAAACGA-GGAGTTCCATGGACTGAAGAA-GAACACAAGCTGTTCTTGCTTGGGCTG 418
Query 450 CAGAAAGTAGGAAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTGAAGAGTAGGAC- 508
|||| ||| || ||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 419 CAGAGAGTCGGTAAAGGAGATTGGAAAGGAATATCAAGAAACTTTGTCAAGACCAGAACC 478
Query 509 TCCTACTCAAGTAGCTAGTCACGCTCAGAAATACTTCCTCCGACGAACCAACCTCAATCG 568
|| ||| ||||| |||||||| |||||||||||||||||| | |||| || || || ||
Sbjct 479 TC-TACACAAGTTGCTAGTCATGCTCAGAAATACTTCCTCAGGCGAAGTAATCTTAACCG 537
Query 569 TCGTAGGCGAAGATCTAGCCTTTTCGATATCACTACTGAGACGGTCA 615
||| | ||||||||||||||||| || || |||||||| |||||||
Sbjct 538 TCGCCGCCGAAGATCTAGCCTTTTTGACATGACTACTGATACGGTCA 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72338985345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5