BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472129 Length=2113 Score E Sequences producing significant alignments: (Bits) Value AT1G19090.1 | Symbols: RKF2, CRK1 | receptor-like serine/threon... 3271 0.0 > AT1G19090.1 | Symbols: RKF2, CRK1 | receptor-like serine/threonine kinase 2 | chr1:6590245-6592816 FORWARD LENGTH=2109 Length=2109 Score = 3271 bits (1771), Expect = 0.0 Identities = 2007/2120 (95%), Gaps = 19/2120 (1%) Strand=Plus/Plus Query 1 AGAAACTGAGGATTCATAGATGTTATACTCTATCAAAAATCGCAGATTTGCATATGG-AA 59 |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||| || Sbjct 2 AGAAACAGAGGATTCATCGATGTTATACTCTATCAAAAATTGCAGATTTGCATATGGAAA 61 Query 60 GACTTCTTCTTCTTTGTCACGATTCATGATCACGCGCCGTCGGATTTCTGATGCAAATTT 119 || ||||||| | ||||||||||||||||| || |||| |||||||||||||||||| Sbjct 62 GA---CTTCTTC--T-TCACGATTCATGATCACACGTCGTCCGATTTCTGATGCAAATTT 115 Query 120 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 GTGCTTCGATCGCTCAATTCCTCGCTTGGGTTTCATTCCTTGTACTATTAGCGACGGTGG 175 Query 180 GCTCTTCTTCTTCTTCGAAATCTCTCCTCAATTGTCATCCTTTAGATCAACACCTTGTAA 239 ||||||||||||||||| |||||||||| |||||||| ||||||||||| |||||||||| Sbjct 176 GCTCTTCTTCTTCTTCGGAATCTCTCCTAAATTGTCAACCTTTAGATCACCACCTTGTAA 235 Query 240 ACCCTAGTCGTCAGCTTGATTTCCTCAGAGCAATGTCTTCCGTCAATGATTACATTACCG 299 |||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||| Sbjct 236 ACCCTAGTCGTCTGCTTGGTTTCCTCAGAGCAATGTCTTCCGTCAATGATTTCATAACC- 294 Query 300 AA-GACAAGCTCTGGGTCGTTTCTTCCATCACCGATCTATCTCCACCCATCTATGTGTTT 358 || |||||||| |||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 295 AACGACAAGCTTTGGGTCGTTTCTTCCATCACCGATGTATCTCCACCTATCTATGTGTTT 354 Query 359 CTACAGTGCCGCGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 418 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 355 CTACAGTGCAGAGAAGATCTCTCTGTTTCCGATTGTCGACATTGCTTCAACGAGAGCAGA 414 Query 419 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATTCATAGTGATGGATGCTTC 478 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 415 TTGGAGCTCGAGAGAAAATGTTCGGGTTCCGGTGGTCGAATCCATAGTGATAGATGCTTC 474 Query 479 TTACGGTTTGATGATCGAGATTTCTCAGAGGAGTTTGTTGATCCTAGATTTGATAGAGCC 538 |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||| Sbjct 475 TTACGGTTTGATGATCGAGATTTCTCTGAGGAATTTGTTGATCCTACATTTGATAAAGCT 534 Query 539 AAATGTGAGGAAACAGAGCCAGGGTTTGGAGATTTTTGGAAATATCTTGATGAGGCTTTG 598 || ||||||||||||| | ||||||||||||| ||||||| || |||||||||||||||| Sbjct 535 AACTGTGAGGAAACAGGGACAGGGTTTGGAGAATTTTGGAGATTTCTTGATGAGGCTTTG 594 Query 599 GTGAATGTAACCTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTGCTGTGACTAGA 658 ||||||||||| |||||||||||||||||||||||||||||||||||| | |||| || | Sbjct 595 GTGAATGTAACTTTAAAGGCTGTTAAAAATGGAGGGTTTGGTGCAGCTTCAGTGATTAAA 654 Query 659 GCCGAGGCGGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACTCGTGTCGA 718 ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 655 ACCGAGGCCGTGTATGCATTGGCTCAGTGTTGGCAAACACTTGATGAGAACACGTGTCGA 714 Query 719 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGGTGGACATGAGGCTAGCGCT 778 |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| Sbjct 715 GAGTGTTTGGTTAATGCTAGATCGAGCTTGAGAGCTTGTGATGGACATGAAGCTAGAGCT 774 Query 779 TTCTTTACAGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 838 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 TTTTTTACTGGGTGTTACTTGAAGTATTCTACACACAAGTTCTTTGATGATGCTGCAGAA 834 Query 839 CATAAACCTGACGATGATCAGAGAAACTTTATAAGGTCATCGCTTTTTCCACATTTGAGT 898 ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 835 CATAAACCTGACGCTGATCAGAGAAACTTTATAAGGTCATCGTTTTTTCCACATTTGAGT 894 Query 899 GATCATGATATTACGAAATTAGCAATAGCTGCGATTTCGTTGTCTTTTCTTACTTCTCTT 958 |||| |||| |||||| ||||||||| ||||||||||||||||| |||||||||||||| Sbjct 895 GATCGTGATGTTACGAGATTAGCAATTGCTGCGATTTCGTTGTCGATTCTTACTTCTCTT 954 Query 959 GGTGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1018 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 955 GGAGCCTTTATCAGTTACAGACGGGTTTCAAGGAAAAGAAAAGCTCAAGTTCCATCGTGT 1014 Query 1019 -TCAAATTTCAAATACGAGACGCTTGAGAAGGCGACCGAGTCTTTCCATGACTCTTTGAA 1077 | ||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| Sbjct 1015 GT-AAATTTCAAATACGAGATGCTTGAGAAAGCGACCGAGTCTTTCCATGACTCTATGAA 1073 Query 1078 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTCAACACACGTGAATGGGCGGATCA 1137 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 1074 ACTAGGCCAAGGAGGGGCCGTCAAAAAGCTCTTCTTTAACACACGTGAATGGGCAGATCA 1133 Query 1138 GTTCTTCAACGAAGTGAATTTGATCAGCAGAGTTCAACACAAGAACCTTGTGAGACTACT 1197 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 1134 ATTCTTCAACGAAGTGAATCTGATCAGCGGAGTTCAACACAAGAACCTTGTGAGACTACT 1193 Query 1198 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAATAGAAG 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1194 TGGTTGCAGCATTGAAGGTCCCAAAAGTCTTCTTGTCTATGAATATGTTCATAACAGAAG 1253 Query 1258 CCTTGATCAAATCCTTTTCATGAAGAATACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1317 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1254 CCTTGATCAAATCCTTTTCATGAAGAACACAGTCCATATTTTGAGCTGGAAGCAACGGTT 1313 Query 1318 TAACATCATTATAGGAATTTCAGAAGGTCTAGAATACCTTCACGGAGGATCTGAAGTAAA 1377 |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| Sbjct 1314 TAACATCATTATAGGAATATCAGAAGGTCTAGAATACCTTCACAGAGGATCTGAAGTAAA 1373 Query 1378 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1374 AATCATCCATAGAGACATCAAAACCAGCAATATTCTCCTTGATCGAAACCTAAGTCCCAA 1433 Query 1438 AATAGCAGATTTTGGACTCATACGTTCAATGGGCACTGACAAAACGCAAACCAATACTGG 1497 |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1434 AATAGCTGATTTTGGACTCATACGTTCCATGGGCACTGACAAAACGCAAACCAATACTGG 1493 Query 1498 AATTGCTGGAACACTTGGTTATTTGGCTCCTGAATATCTTATCAAAGGCCAATTAACAGA 1557 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| Sbjct 1494 AATTGCTGGAACACTTGGTTATCTGGCTCCTGAATATCTGATCAAAGGCCAATTAACAGA 1553 Query 1558 GAAAGCTGACGTTTACGCATTCGGAGTTCTTATAATCGAGATAGCTA-CTGGAAAGAAAA 1616 ||||||||||||||||||||| ||||||||||| |||||||||| || |||| ||||||| Sbjct 1554 GAAAGCTGACGTTTACGCATTTGGAGTTCTTATCATCGAGATAG-TAACTGGCAAGAAAA 1612 Query 1617 ACAACGCATTCACGCAAGGCACTAGCTCGGTTTTATACTCTGTATGGGAGCATTTTAAAG 1676 | ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 1613 ATAACGCATTCACGCAAGGAACTAGCTCGGTTTTATACTCTGTATGGGAACATTTTAAAG 1672 Query 1677 CAAGCACTTTAGATCGCTCGATCGATCCTCGGTTGAAAGGGAGTTTC-TCAGAGGAAGAG 1735 ||| ||||||||||||||| ||||||||||||||||||||||||||| | |||||||||| Sbjct 1673 CAAACACTTTAGATCGCTCTATCGATCCTCGGTTGAAAGGGAGTTTCGT-AGAGGAAGAG 1731 Query 1736 GCCTTGAAGGTTCTCCAAATCGGATTGTTGTGTGTTCAATCTTCAGTAGAATTAAGACCG 1795 |||||||||||||| ||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 1732 GCCTTGAAGGTTCTTCAAATCGGATTGTTGTGTGTTCAATCTTCTGTAGAGTTGAGACCG 1791 Query 1796 TCAATGTCTGAGATAGTCTTCATGTTAAAGAACAAAGATAGTAAATTTGAATGTCCGAAA 1855 ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 1792 TCAATGTCTGAGATAGTCTTCATGTTACAGAACAAAGATAGTAAATTTGAATATCCGAAA 1851 Query 1856 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAAAGTCTGATAT 1915 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1852 CAGCCTCCGTTCTTGAGTGCCAGTGTTCTAATGCCAGATGAGGAGACTAGAGTCTGATAT 1911 Query 1916 TATCAGTTTCTTAGGATT-TATATTGTTCTTCTGTAAATGCTCAAAGAGGGATTTTACAC 1974 |||||||||||||||||| | || |||||||||||||||||||||| | ||||||||||| Sbjct 1912 TATCAGTTTCTTAGGATTGT-TAATGTTCTTCTGTAAATGCTCAAAAATGGATTTTACAC 1970 Query 1975 CACT-CTTTCTCCTTTTCAAATCTTTTATCTGTTCATATTTTATTATGAAGGTCAACAAA 2033 || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1971 CATTTCTTTCTCCTTTTCAAATCTTTTATC-GTTCATATTTTATTATGAAGGTCAACAAA 2029 Query 2034 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGCTTACATCATTATTCTTTTTACA 2093 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 2030 AATGGAACCAAGGCTAGATTCTAAAAGTTTTGATTCGTTTACATCATTATTCATTTTACA 2089 Query 2094 ATCTAAAAGATGCGAGTTAT 2113 ||||||| ||| ||||||| Sbjct 2090 ATCTAAATCATGTGAGTTAT 2109 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104768537415 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5