BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472139 Length=1042 Score E Sequences producing significant alignments: (Bits) Value AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light har... 1491 0.0 > AT1G19150.1 | Symbols: LHCA6, LHCA2*1 | photosystem I light harvesting complex gene 6 | chr1:6612749-6613972 FORWARD LENGTH=1043 Length=1043 Score = 1491 bits (807), Expect = 0.0 Identities = 977/1055 (93%), Gaps = 28/1055 (3%) Strand=Plus/Plus Query 1 ACAATCAAAGATGACACTAGCTAGACATTTTCATTTTCATCT-CCCACGAATCAAAGATG 59 |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| Sbjct 1 ACAATCAAAGATGACACTAGCTAGACATTTTCGTTTTCATCTCCCCACGAATCAAAGATG 60 Query 60 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCTACGAGCAGAGTCCAA 119 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCCACGAGCAGAGTCCAA 120 Query 120 AA-CGCGACCCAGAGAAGACCACAAGTAGCGTCCGCATCACCCACTGGTGGAAGA--A-T 175 || | | ||||||||||||||||| ||||||||| ||||| |||| ||||||||| | | Sbjct 121 AATC-CTACCCAGAGAAGACCACATGTAGCGTCCACATCATCCACCGGTGGAAGATTAAT 179 Query 176 GAGTGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCATCTGTGAACCACT 235 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 180 GAGAGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCGTCTGTGAACCACT 239 Query 236 TCCTCCGGACCGTCCTTTGTGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 295 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 240 TCCTCCGGACCGTCCTTTATGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 299 Query 296 CTTACCTGGTGATTTTGGTTTCGATCCTCTCGGTTTAGGGTCTGACCCGGACACCCTCAA 355 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| Sbjct 300 CTTACCTGGTGATTTCGGTTTCGATCCTCTCGGTTTAGGGTCTGATCCGGACACCCTCAA 359 Query 356 ATGGTTTGCACAAGCTGAGCTCATACATAGCCGGTGGGCAATGCTGGCCGTGACAGGTAT 415 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 360 ATGGTTTGCACAAGCTGAGCTTATACATAGCCGGTGGGCAATGCTGGCCGTGACCGGTAT 419 Query 416 CCTAATACCGGAATGTCTAGAGCGGTTAGGTTTCATCGAGAATTTCTCATGGTACGACGC 475 | ||||||| |||||||| ||||||||||||||||| || |||||||||||||| ||||| Sbjct 420 CATAATACCAGAATGTCTCGAGCGGTTAGGTTTCATTGAAAATTTCTCATGGTATGACGC 479 Query 476 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGTTGTTTGTGGCTCAAATGGTTTTAAT 535 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 480 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGCTGTTTGTGGCTCAAATGGTTTTAAT 539 Query 536 GGGCTGGGCAGAGGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTGGACATAGA 595 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 540 GGGCTGGGCAGAAGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTTGACATAGA 599 Query 596 ACCAAAGTACCCGCACAAAGTAAATCCTAAACCGGATGTTGGTTACCCGGGCGGTTTATG 655 ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| || Sbjct 600 ACCAAAGTACCCGCATAAAGTAAATCCTAAACCGGATGTTGGTTACCCTGGAGGTTTGTG 659 Query 656 GTTCGATTTTATGATGTGGGGTAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 715 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 660 GTTCGATTTTATGATGTGGGGGAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 719 Query 716 AGAGATTAAAAACGGACGGCTCGCGATGCTTGCTTTCGTTGGGTTTTGTTTCCAAGCTAA 775 ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 720 AGAGATTAAGAACGGACGGCTCGCGATGCTTGCTTTCCTTGGGTTCTGTTTCCAAGCTAC 779 Query 776 CTACACTAGTCAAGATCCAATTGAAAATCTCATGGCTCATCTTGCTGATCCTGGTCATTG 835 ||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 780 CTACACTAGCCAAGATCCAATTGAGAATCTCATGGCTCATCTGGCTGATCCTGGTCATTG 839 Query 836 CAACGTCTTCTCGGCATTTACATCACATTAATGAGGATTAGCCTGCGGCAAA-ATTAAt- 893 ||||||||| |||||||||||||||||||||||||||||||| || ||| || || ||| Sbjct 840 CAACGTCTTTTCGGCATTTACATCACATTAATGAGGATTAGCTTGGGGCGAATAT-AATA 898 Query 894 ttttttATAAATATAATAGATCATGGATGTTGAACTTTTGTATATAGCGTCACTCGCCGT 953 ||||||||| ||| | | |||||||||||||||||||||| | |||||||||||| Sbjct 899 TTTTTTATA--TAT--T---T-ATGGATGTTGAACTTTTGTATA--GTGTCACTCGCCGT 948 Query 954 TGTTACAA-TTCATGCTTACTTAATTAATTACGTAACATGTAAAATA-AGTATATG-A-A 1009 |||||||| ||| ||||||||||||||| | |||| || || || | |||||| | | Sbjct 949 TGTTACAACTTC-TGCTTACTTAATTAAC-ATGTAAAATATATTTTATA-TATATGTAGA 1005 Query 1010 C-AA-GAAACAAGACGAGAAAATGAGCTTTATTAT 1042 || ||||||||| |||||||||||| ||||||| Sbjct 1006 AGAAAGAAACAAGAAGAGAAAATGAGCATTATTAT 1040 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51088127499 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5