BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472142
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19180.1 | Symbols: JAZ1, TIFY10A | jasmonate-zim-domain pro... 804 0.0
> AT1G19180.1 | Symbols: JAZ1, TIFY10A | jasmonate-zim-domain protein
1 | chr1:6622094-6623620 FORWARD LENGTH=1329
Length=1329
Score = 804 bits (435), Expect = 0.0
Identities = 577/638 (90%), Gaps = 40/638 (6%)
Strand=Plus/Plus
Query 454 GGAACGTTT-GGCAACTCACGTCAGCCGACAACAACGATGAGTTTATTCCCTTGTGAAGC 512
||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 381 GGAAC-TTTAGGCAACTCACGTCAGCCGACAACAACCATGAGTTTATTCCCTTGTGAAGC 439
Query 513 TTCAAACATGGATTCCATGGTAGCACCAGCTCAAGATGTTAAACCGACGAATTTGTTTCC 572
||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 440 TTCTAACATGGATTCCATGGT---------TCAAGATGTTAAACCGACGAATCTGTTTCC 490
Query 573 -ACGGCAACTAAGTTTTTCTTCCTCATCTTCCTCTGTTCTAAAGGAAGATGTTCTGAAAA 631
| |||||| ||| ||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 491 TA-GGCAACCAAGCTTTTCTTCCTCATCTTCCTCTCTTCCAAAGGAAGATGTTTTGAAAA 549
Query 632 TGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 TGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCT 609
Query 692 ACGCCGGGCAAGTGATTGTATTCAATGACTTCTCTGCTGAAAAAGTCAAAGAAGTGATGA 751
||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
Sbjct 610 ACGCCGGGCAAGTGATTGTATTCAATGACTTTTCTGCTGAGAAAGCCAAAGAAGTGATCA 669
Query 752 ACTTGGCTAGCAAAGGCACCGCTAATAGCTTCACCGGTTTCACATCTAATGTCAACTTAG 811
||||||| ||||||||||||||||||||||| | | | || | | || |
Sbjct 670 ACTTGGCGAGCAAAGGCACCGCTAATAGCTT-A--G----C-CA---A--G--AA-T--- 710
Query 812 CCAAGAATCAAACCGAGATCAGAAGCAACATCGCTACTATCACAAACCAAGTTCCTCATC 871
| || | | | || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 711 C-AA-A--C---C-GATATCAGAAGCAACATCGCTACTATCGCAAACCAAGTTCCTCATC 762
Query 872 CAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTC 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTC 822
Query 932 CTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGGGTTACGT 991
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 823 CTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGAGTTACGT 882
Query 992 CAAAGGCACCATACCAGTTATGCGATCCAGCCAAAGCGTCTTCAAAGCCTCAAACCGCAG 1051
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 883 CAAAGGCACCATACCAATTATGCGATCCAGCCAAAGCGTCTTCAAACCCTCAAACCACAG 942
Query 1052 ACAACATGTCGTGGCTCGGTTTGGCAGCTGAAATATGA 1089
||||||||||||||||||||| |||||||||||||||
Sbjct 943 GCAACATGTCGTGGCTCGGTTTAGCAGCTGAAATATGA 980
Score = 265 bits (143), Expect = 8e-70
Identities = 173/187 (93%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 106 TTTCAAAGTTTTATTTGTTAAAGATGTCGAGTTCTATGGAATGCTCTGAGTTCGTCGCTA 165
||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 196 TTTGAAAGTTTTAATTGTTAAAGATGTCGAGTTCTATGGAATGTTCTGAGTTCGTCGGTA 255
Query 166 GTCGGAGATTTACTGGGAAG---CCGAGCTTCTCACAAACGTGTAGTCGATTGAGTCAGT 222
| |||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 256 GCCGGAGATTTACTGGGAAGAAGCCTAGCTTCTCACAGACGTGTAGTCGATTGAGTCAGT 315
Query 223 ACCTGAAGGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGCATGGCATGCAAGCCTGATG 282
| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 316 ATCTAAAAGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGAATGGCATGCAAGCCTGATG 375
Query 283 TCAATGG 289
|||||||
Sbjct 376 TCAATGG 382
Score = 113 bits (61), Expect = 3e-24
Identities = 98/114 (86%), Gaps = 9/114 (8%)
Strand=Plus/Plus
Query 1 AACTCTGCAACCAAACCAA--AA--CC-AA-CCCAA-AAAGCTTTAAAGAGACCCTCCAT 53
||||||||||||||||||| || || || || || |||| |||| ||||||| |||||
Sbjct 21 AACTCTGCAACCAAACCAACCAACCCCAAAGCCAAACAAAGTTTTATAGAGACCTTCCAT 80
Query 54 TTCT-CC-CTCGTGACAAACGCAATTTGCAGAGAAGCAACAACATCAATAAGAA 105
|||| || ||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 81 TTCTCCCTCTCGTGACAAACGCAATTTGCAGAGAAGCAACAGCAACAACAAGAA 134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5