BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472188
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19640.1 | Symbols: JMT | jasmonic acid carboxyl methyltrans... 2084 0.0
> AT1G19640.1 | Symbols: JMT | jasmonic acid carboxyl methyltransferase
| chr1:6788885-6791846 REVERSE LENGTH=1589
Length=1589
Score = 2084 bits (1128), Expect = 0.0
Identities = 1293/1369 (94%), Gaps = 25/1369 (2%)
Strand=Plus/Plus
Query 1 TTCTGCTTCATCAAAAAGAAAGAGACAC----A---A-AGA--GAG-G-GATGGAAGTAA 48
|||||||||||||||||||||||||||| | | ||| ||| | |||||| ||||
Sbjct 89 TTCTGCTTCATCAAAAAGAAAGAGACACAAAGAGCGAGAGAGGGAGAGAGATGGAGGTAA 148
Query 49 TGCGAGTTCTTCACATGAACAAAGGAAACGGTGAAACAAGTTATGCCAAGAACTCCACCG 108
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 149 TGCGAGTTCTTCACATGAACAAAGGAAACGGTGAAACGAGTTATGCCAAGAACTCCACCG 208
Query 109 TTCAGAGCAACATAATATCTCTAGGCAGAAGAGTAATTGACGAGGCCTTGAAGAAGCTAA 168
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 209 CTCAGAGTAACATAATATCTCTAGGCAGAAGAGTAATGGACGAGGCCTTGAAGAAGTTAA 268
Query 169 TGATGAGAAATTCAGAGATTTCGAGCATTGGAATCGCCGACTTAGGTTGCTCCTCCGGCC 228
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 269 TGATGAGCAATTCAGAGATTTCGAGCATTGGAATCGCCGACTTAGGCTGCTCCTCCGGTC 328
Query 229 CGAACAGTCTCTTGTCCATCTCTAACATAGTTGACACGATCCACAACTTGTGTCCTGACC 288
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 329 CGAACAGTCTCTTGTCCATCTCCAACATAGTTGACACGATCCACAACTTGTGTCCTGACC 388
Query 289 TCGACCGTCCAGTCCCTGAGCTCAGACTCTCTCTCAACGACCTCCCTAGCAATGACTTCA 348
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 389 TCGACCGTCCTGTCCCTGAGCTCAGAGTCTCTCTGAACGACCTCCCTAGCAATGACTTCA 448
Query 349 ACTACATATTTGCTTCTTTGCCGGAGTTTTATGACCGGATTAATAATAACAAGGAGGGTT 408
||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 449 ACTACATATGTGCTTCTTTGCCAGAGTTTTACGACCGGGTTAATAATAACAAGGAGGGTT 508
Query 409 TAGGGTTCGGTCGCGGAGGAGGAGAATCGTGTTTTGTGTCGGCCGTCCCTGGCTCGTTCT 468
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 509 TAGGGTTCGGTCGTGGAGGAGGAGAATCGTGTTTTGTGTCGGCCGTCCCAGGTTCGTTCT 568
Query 469 ACGGACGTTTGTTTCCTCGCCGGAGCCTTCACTTTGTGCATTCTTCTTCTAGTTTACATT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 ACGGACGTTTGTTTCCTCGCCGGAGCCTTCACTTTGTGCATTCTTCTTCTAGTTTACATT 628
Query 529 GGTTGTCTCAGGTTCCATGTCGTGAGGTGGAGAAGGAAGACAGGGCGATAAGAGCTGATT 588
|||| |||||||||||||||||||||| |||||||||||||||| | |||| ||||||||
Sbjct 629 GGTTATCTCAGGTTCCATGTCGTGAGGCGGAGAAGGAAGACAGGACAATAACAGCTGATT 688
Query 589 TAGACAACATGGGGAAAATATACATATCAAAGACAAGTCCTAAGAGTGCACATAAAGCTT 648
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 TAGAAAACATGGGGAAAATATACATATCAAAGACAAGTCCTAAGAGTGCACATAAAGCTT 748
Query 649 ATGCTCTTCAATTCCAAACTGATTTCTTGGtttttttGAGATCGCGATCTGAGGAGTTGG 708
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 749 ATGCTCTTCAATTCCAAACTGATTTCTGGGTTTTTTTGAGATCGCGATCTGAGGAGTTGG 808
Query 709 TCCCGGGAGGACGAATGGTTTTATCGTTCCTTGGTAGAAGCTCGCTGGATCCCACAACCG 768
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 809 TCCCGGGAGGCCGAATGGTTTTATCGTTCCTTGGTAGAAGATCACTGGATCCCACAACCG 868
Query 769 AAGAGAGTTGCTATCAATGGGAACTCCTAGCTCAAGCTCTTATGTCCATGGCCAAAGAGG 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 AAGAGAGTTGCTATCAATGGGAACTCCTAGCTCAAGCTCTTATGTCCATGGCCAAAGAGG 928
Query 829 GTATCATCGAGGAAGAGAAGATCGATGCTTTCAACGCTCCTTACTATGCTGCAAGCTCCG 888
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 929 GTATCATCGAGGAAGAGAAGATCGATGCTTTCAACGCTCCTTACTATGCTGCGAGCTCCG 988
Query 889 AAGAGTTGAAAATGGTGATAGAGAAAGAAGGGTCCTTTTCGATCGATAGGCTCGAGATAA 948
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 989 AAGAGTTGAAAATGGTGATAGAGAAAGAAGGGTCATTTTCGATCGATAGGCTTGAGATAA 1048
Query 949 GTCCGGTTGATTGGGAAGGTAGGAGTATCAGTGAGGAGAGTTATGACCTAGTAGTAAGGT 1008
||||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 1049 GTCCGATTGATTGGGAAGGTGGGAGTATCAGTGAGGAGAGTTATGACCTTGTAATAAGGT 1108
Query 1009 CCAAACCTGAAGCCCTAGCTAGTGGACGAAGAGTGGCTAATACCATAAGAGCTGTGGTCG 1068
||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1109 CCAAACCCGAAGCCCTAGCTAGTGGCCGAAGAGTGTCTAATACCATAAGAGCTGTGGTCG 1168
Query 1069 AGCCGATGCTAGAACCTACATTCGGTGAAAATGTGATGGACGAGCTTTTTGAAAGGTATG 1128
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1169 AGCCGATGCTAGAACCTACTTTCGGTGAAAATGTGATGGACGAGCTTTTTGAAAGGTATG 1228
Query 1129 CAAAGATCGTGGGAGAGTACTTCTATGTAAGCTCGCCTCGATACGCTATTGTTATTGTTT 1188
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1229 CAAAGATCGTGGGAGAGTACTTCTATGTAAGCTCGCCACGATACGCTATTGTTATTCTTT 1288
Query 1189 CGCTCGTTAGAACCGGTTGATCGTGATATAACATATGCCTATATATATACATGTCTTTGG 1248
||||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||||||
Sbjct 1289 CGCTCGTTAGAGCCGGTTGATCGTGTTATAACATATGCC-A-ATATA--CATGTCTTTGG 1344
Query 1249 ACCTACAATGACATGATTTG-TAAGTTTTCTAATCAAGTATACTGTATATGTAATATCAT 1307
||||||||||||||||||| || |||||||||||||| ||| |||| || | || ||
Sbjct 1345 GCCTACAATGACATGATTTGGTA-GTTTTCTAATCAAGCATA-TGTA-AT--A-TA--AT 1396
Query 1308 TTGCTTCGAGAATAAAACAATAAAATAGAGTGTGATTTTACGGTAGACC 1356
||||||||||||||||| ||||||||| ||| |||| ||||||||||||
Sbjct 1397 TTGCTTCGAGAATAAAATAATAAAATAAAGTCTGATGTTACGGTAGACC 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5