BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472189
Length=2268
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19650.1 | Symbols: | Sec14p-like phosphatidylinositol tran... 3118 0.0
> AT1G19650.1 | Symbols: | Sec14p-like phosphatidylinositol transfer
family protein | chr1:6796202-6799759 REVERSE LENGTH=2278
Length=2278
Score = 3118 bits (1688), Expect = 0.0
Identities = 2113/2307 (92%), Gaps = 74/2307 (3%)
Strand=Plus/Plus
Query 1 aaaaaaaGATCGAATCTTCAACATTTATGGCTCTGATTTTCCGGCCGCCGTGAAAATTAG 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 AAAAAAAG-TCGAATCTTCAACATTTATGGCTCTGATTTTCCGGCCGCCGTGAAAATTAG 65
Query 61 TAGCAAACAATTATTTTCACGTTCGCAT-----AACG-------AAA---CTCACAGTTA 105
|||| |||| ||| |||||| ||||||| |||| ||| ||||||||||
Sbjct 66 TAGCCAACATTTA-TTTCACATTCGCATAACGAAACGAATCAATAAATCGCTCACAGTTA 124
Query 106 CTTCTTCATCA-ACCCCttttgatccttcaatttcgaaaattttcagatttttctaaagt 164
||||||||| | ||||| || |||||||||||| | ||||||| ||||| ||| |
Sbjct 125 CTTCTTCAT-ATACCCC--TT--TCCTTCAATTTC----AGTTTCAGA-TTTTCCAAA-T 173
Query 165 t-tcga-ttt-tttttttttGGAGTATCAAGTTCGATTGATTCTTCTCAATGTCGGGTCC 221
| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCTAAAGTTTCGATTTTTTTGGAGTATCAAGTTCGATTGATTCTTCTCAATGTCGGGTCC 233
Query 222 TCTTGAACGATTCACAAGTCCATGTTTCTCCAACAATGGTGAGAGAAGAGAAAAGAAGTC 281
|| || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 234 CCTAGATCGATTCACAAGCCCATGTTTCTCCAACAATGGTGAGAAAAGAGAAAAGAAGTC 293
Query 282 AGATTTCGAAGTTTCAGAGGATGATGATAAGAAAACTAGAGTTGGTGGTATT-TTCAGGA 340
||||||||||||||| |||||||| | |||||||||||| ||||||| ||| || | ||
Sbjct 294 AGATTTCGAAGTTTCGGAGGATGA-G--AAGAAAACTAGAATTGGTGGAATTCTT-AAGA 349
Query 341 AGAAATCATCCAAAACCAAATTCAGACATTCCCTGAAGAGGAAAGGGAGCAGCAGTAGGA 400
||||||||||||||| ||||||||||||||||||||||||| | ||| | | | |
Sbjct 350 AGAAATCATCCAAAAGCAAATTCAGACATTCCCTGAAGAGG--A--GAG--G--G-A-G- 398
Query 401 CGAGAAGCATTGACCGGACTCTCTCGCTTACCTTTGAAGACATACATGATGCTGAAGAAT 460
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 399 C-AGAAGCATTGACCGGACTCTTTCGCTTACCTTTGAAGACATACATGATGCTGAAGAAT 457
Query 461 TACGATATGTCTCTCAATTCCGACAATCTCTCATCTCTGATCATTTGCTACCACCAAACC 520
|| ||||||||||| ||||||||||||| || |||||||||||||| || || |||||||
Sbjct 458 TAAGATATGTCTCTGAATTCCGACAATCACTTATCTCTGATCATTTACTGCCTCCAAACC 517
Query 521 TTGATGATTATCACATCATGTTGAGATTCCTGTTCGCTAGGAAATTTGATCTTGGAAAAG 580
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 518 TTGATGATTATCACATCATGTTGAGATTCCTCTTCGCTAGGAAATTTGATCTAGGAAAAG 577
Query 581 CAAAGTTAATGTGGACTAATATGATCCATTGGAGAAGGGACTTCGGAACAGACACAATCT 640
||||||||||||||||||| |||||||| ||||||||||| || || |||||||||||||
Sbjct 578 CAAAGTTAATGTGGACTAACATGATCCAATGGAGAAGGGATTTTGGCACAGACACAATCT 637
Query 641 TGGAGGACTTTGAGTTTCCTGAATTGGAAGAAGTTCTCAAGTATTATCCGCAGGGATATC 700
|||||||||||||||||||||| ||||| || ||||||| ||| || || ||||||||||
Sbjct 638 TGGAGGACTTTGAGTTTCCTGAGTTGGATGAGGTTCTCAGGTACTACCCTCAGGGATATC 697
Query 701 ATGGTGTTGATAAGGAAGGGAGACCTGTTTACATCGAAAGATTAGGAAAAGTCGACGCAA 760
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ATGGTGTTGATAAGGAAGGAAGACCTGTTTACATCGAAAGATTAGGAAAAGTCGACGCAA 757
Query 761 GCAAACTCATGCAAGTCACTACATTAGAAAGATATTTGAGATATCATGTTAAGGAGTTTG 820
||||||||||||||||||||||||| ||||| || |||| ||||||||||| |||||||
Sbjct 758 GCAAACTCATGCAAGTCACTACATTGGAAAGGTACCTGAGGTATCATGTTAAAGAGTTTG 817
Query 821 AAAAAACTATTACTGTCAAGTTCCCTGCTTGCTGCATTGCTGCTAAGAGACACATCGACT 880
| || ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 818 AGAAGACTATCACTGTCAAGTTTCCTGCTTGCTGCATTGCTGCTAAGAGACACATTGACT 877
Query 881 CCAGTACAACAATCCTAGATGTCCAAGGCCTGGGCTTAAAAAATTTCACTAAAACTGCTC 940
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 878 CCAGTACAACAATCCTAGATGTCCAAGGCCTGGGCTTGAAAAATTTCACTAAAACTGCTC 937
Query 941 GGGATCTTATAATCCAGCTGCAAAAGATTGATAGTGATAACTACCCTGAGACACTTCACC 1000
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GGGATCTTATAATCCAGTTGCAAAAGATTGATAGTGATAACTACCCTGAGACACTTCACC 997
Query 1001 GTATGTTTATTATCAATGCCGGCTCTGGTTTTAAGCTACTTTGGGGCACAGTAAAATCGT 1060
|||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 998 GTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGT 1057
Query 1061 TTCTTGATCCAAAGACTGTCTCCAAAATACATGTCCTTGGCAACAAGTACCAGAACAAAC 1120
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1058 TTCTTGATCCAAAGACTGTCTCCAAAATACATGTCCTTGGGAACAAGTACCAGAACAAAT 1117
Query 1121 TACTTGAGATGATAGATGCAAGCCAACTGCCAGATTTTCTT-GGTGGTACTTGCACTTGT 1179
||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||
Sbjct 1118 TACTTGAGATGATTGATGCAAGCCAGCTGCCAGATTTT-TTCGGTGGTACTTGCACTTGT 1176
Query 1180 GCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACCCTGAGATACTA 1239
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1177 GCAGATCAGGGAGGTTGTATGAGATCTGATAAAGGGCCCTGGAAAGACTCTGAGATACTA 1236
Query 1240 AAGATGGGCCGCAGTGGTGGGACGTTCTGTAGGCATGCTGGTGCTTTCCTAAGCAGTGAT 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1237 AAGATGGGCCGCAGTGGTGGGACGTTCTGTAGGCATGCTGGTGCTTTCCTAAGCAGTGAT 1296
Query 1300 TCCCAAATATCCTCATCGGATAAGCAAACTTATTCGTTGAAAGTTAGTGACACATCAACA 1359
||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 1297 TCCCAAATATCTTCATCGGATAAGCCAACTTATTCGTTGAAAGTTAGTGACACCTCAACA 1356
Query 1360 GCAGAGTCAGGGTCTGAATTGGAAGAGATGGCTTCACCGAAAACAAATATGAACAATCAT 1419
||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1357 GCAAAGTCAGGGTCTGAATTGGAAGAGATGGCTTCACCGAAAACAAATACGAACAATCAT 1416
Query 1420 GTACCCAAGTTGACTCCTGTTTCTGAAAATGCCAATGGTAGCAGAAGTCCTACTGTTTTA 1479
||||||||||| ||||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 1417 GTACCCAAGTTAACTCCTGTTTCTGAATATGCCAATGGTAACATAAGTCCTACTGTTTTA 1476
Query 1480 TCTGAATATGAAGTGTGTGTACCAATGGTGGACAAAGTTGTGGATGTTGCTTGGCGGCCC 1539
||||| ||||||| |||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1477 TCTGAGTATGAAGAATGTGTACCAATGGTGGACAAAGTTGTGGATGTTGCTTGGCAGCTC 1536
Query 1540 CGAGAGATGTCAAATGCTTCTGAAGGTCCGCAATATTCATCAAGTTTGGGAAAAATAGGA 1599
| ||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1537 CAAGAGATGCCAAATGCTTCCGAAGGTCCGCAATATACATCAAGTTTGGGAAAAATAGGA 1596
Query 1600 TCAGTTAGTCACATATGGAGGTTT-CTAACTGCGTTCTTCATAAACTTTTCCACACTCCT 1658
|| ||| |||| || ||||| || ||||||||||||||||||| ||||| |||||||||
Sbjct 1597 TCGGTTCGTCATATCTGGAG-TTGGCTAACTGCGTTCTTCATAAGCTTTTTCACACTCCT 1655
Query 1659 CGCGTCTCTGGCTCTGCCACAGACTAAGGAACACTCACAGTTGCATTCTTCAAGCGCTAG 1718
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1656 TGCGTCTCTGGCTCTGCCACAGACTAAAGAACACTCACAGTTGCATTCTTCAAGCGTTAG 1715
Query 1719 AGCCGAGCTGTGTGATGAACGAATAGCAAGGGAATCTCGTCCTCCTTCGCCTTCTCGTTC 1778
||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1716 AGCTGAGCTGTGTGATGAACGAATTGCAAGGGAATCTCGTCCTCCTTCGCCTCCTCGTTC 1775
Query 1779 AACAATCACTGAAAGAGTTATCATTTCCTCTGTTTTAAGCAGACTTGGCGATCTTGAGAA 1838
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1776 AACTATCACTGAAAGAGTTATCATTTCCTCTGTTTTAAGCAGACTAGGCGATCTTGAGAA 1835
Query 1839 ACAGATAGAAACTCTTCACTTAAGGAAATCCGAGATGCCTCAAGAGAAAGAGGAGCTGTT 1898
||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| || |
Sbjct 1836 ACAGATAGAAAATCTTCACTCAAGGAAATCCGAGATGCCTCACGAGAAAGAGGAGTTGCT 1895
Query 1899 GAATGCTGCTGTATATCGTGTGGATGCACTAGAAGCAGAGCTCATCACCACGAAAAAGGC 1958
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1896 GAATGCTGCTGTATATCGTGTGGATGCACTAGAAGCAGAGCTCATCACCACGAAGAAGGC 1955
Query 1959 ATTACATGAGGCTTTAATGAGGCAAGAAGAACTTTTGGGTTACATAGACCGGCAAGAGGA 2018
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1956 ATTACATGAGGCTTTAATAAGGCAAGAAGAACTTTTGGGTTACATAGACCGGCAAAAGGA 2015
Query 2019 AGCTAAGTACCGGAGAAAGAAGTTCTGTTGGTGAAGAACTCGAGCTTGGGAGGTAATTAG 2078
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 2016 AGCTAAGTGCCGGAGAAAGAAGTTCTGCTGGTGAAGAACTCAAGCTTGGGAGGTAATTAG 2075
Query 2079 CAAATAGTGCTTGTTCAGGGATGAGATTAA---C-A----CA---AC-----TAGGTCTG 2122
|||||| ||||||||||||||| |||||| | | || || ||||||||
Sbjct 2076 CAAATATTGCTTGTTCAGGGATCTGATTAAAAACCATGAACATTGACACAAGTAGGTCTG 2135
Query 2123 AAAGCAAATATCTCTGTTGATACCTAATAATGTATATAAAATATAAGAAAAAA-CTCGCA 2181
|||||||||||||||||||| ||||||| ||||||||| |||||||||||| || |||
Sbjct 2136 AAAGCAAATATCTCTGTTGAAACCTAAT---GTATATAAA-TATAAGAAAAAAACTTGCA 2191
Query 2182 ATGAGATTTCAATTTCATCTCTTTCTTGTTGAATTTGCTTGATACTATTGGATTGTGTGA 2241
|||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||
Sbjct 2192 ATGAGATTTCAATTTCATCTCTTTTTTGTTGAATTTGTTTGATACTATTGGATAGTGTGA 2251
Query 2242 ATAATTGCTGCTTGTGACATTGGATTC 2268
|||||| || ||| ||||||||||||
Sbjct 2252 TTAATTGGTGTTTGGGACATTGGATTC 2278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112549621890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5