BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472194 Length=1689 Score E Sequences producing significant alignments: (Bits) Value AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1... 1927 0.0 AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1... 575 5e-163 > AT1G19680.1 | Symbols: | RING/U-box superfamily protein | chr1:6805457-6807862 FORWARD LENGTH=1805 Length=1805 Score = 1927 bits (1043), Expect = 0.0 Identities = 1358/1504 (90%), Gaps = 45/1504 (3%) Strand=Plus/Plus Query 224 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGATAGAAATCTTCCTAGTGG 283 |||||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||| Sbjct 281 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGACAGAAATGTTCCCAGTGG 340 Query 284 AGCTATTCATAATCCAGTGTGCTCACCACCGTGGAGTTTTCGATGGGACAACAGGAGGCG 343 ||||||| ||||| ||||||| |||||| |||||||||||||| |||||||||||||||| Sbjct 341 AGCTATTGATAATTCAGTGTGTTCACCATCGTGGAGTTTTCGACGGGACAACAGGAGGCG 400 Query 344 TGTAGCTGATGAAATTAAAGA-T--TC--ATC-T-A-------A-T-----CA-T-A-AT 380 |||||||||||| |||||||| | || ||| | | | | | | | || Sbjct 401 TGTAGCTGATGAGATTAAAGATTCATCTAATCATAATGTTGGGAGTAGAGGTATTGACAT 460 Query 381 -GATAAGTTGTCGTTAGGGTTAGAGAGAGGACCT-C--CATCTGAAA---GGGATTTAGC 433 ||||||||||||||||| ||||||||||||||| | ||||||||| ||| |||||| Sbjct 461 CGATAAGTTGTCGTTAGGCTTAGAGAGAGGACCTCCGTCATCTGAAACTGGGGGTTTAGC 520 Query 434 TATTCCTGCCTCTCATAAA-CCTGCAGACTCAGAGATGGGCACAGCTTCGATGATTACGG 492 || || || |||||| ||| || |||||||||||||||||||||||||||||| |||| | Sbjct 521 TACTCTTGGCTCTCAGAAATCC-GCAGACTCAGAGATGGGCACAGCTTCGATGGTTACAG 579 Query 493 CTCCTTTAACTGGCAAAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGATAAGTC 552 |||||||| | || | ||||||||||||||||||||||||||||||||||||| ||||| Sbjct 580 CTCCTTTAGCGGGTACAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGGCAAGTC 639 Query 553 CTGTTCATGTTGAGGTGAAGAATATAGTTCACTCACCAGATATTGTTTCATCAGTTTTAC 612 |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 640 CTGTTCGTGTTGAGGTGAAGAATATAGTTGACTCATCAGATATTGTTTCATCAGTTTTAC 699 Query 613 CAAATCCTTCAAGTTCCACCTCGGTCTCTGATCTTCCATCGGGTCTCACACATTCGCTTC 672 ||||||| ||||||||||||||||||||||||||||| || | || ||||||||| |||| Sbjct 700 CAAATCCGTCAAGTTCCACCTCGGTCTCTGATCTTCCTTCAGCTCACACACATTCACTTC 759 Query 673 CTCCCAGATCAACTCCAACTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 732 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 760 CTCCCAGATCAACTCCGTCTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 819 Query 733 AGGTTTCTGATAGTCAAACTTTGGGACTGAAATCACCCAACAATTACTCAATATCTGAAG 792 |||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||| Sbjct 820 AGGTTTCTGATAGTCAAACTTTGGGATTGAAATCTCCCAATAATTACTCAACATCTGAAG 879 Query 793 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGTCACTGGGTCCCATAATA 852 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | Sbjct 880 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGCCACTGGGTCCCATTTTG 939 Query 853 CTTCTTCTGAAGGTGGCTGGTCCATGAACGCCTTTTGTGAGCTCGTGTCTCAATCTCAAA 912 ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| Sbjct 940 CTTCTTCTGAAGGTGGCTGGTCCATAAACGCCTTTTGTGAGCTCGTGGCTCAGTCTCAAA 999 Query 913 GGGAGAGATGGTCGTTTGATAGTGAGCACTTAGGTTCTGGAATACGAAGACTAAGTGGGT 972 ||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||| Sbjct 1000 GGGAGAGATGGTCTTTTGATAATGAGCACTTAGGTTCCGGACGACGAAGACTAAGTGGGT 1059 Query 973 GTAGTAGTAGCAGATTCTCGTGCTCCCCTTCTGTAGATCGGCAGACTTGTGGGAATTGCT 1032 ||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||| Sbjct 1060 GTAGTAGTAGCAGATTCTCATGCTCCCCTTCTGTTGATCAGCAGACTTGTGGGCGTTGCT 1119 Query 1033 CAAAGCTTTTAACTGAGAGGTCTTCAATTGCCAGGTTTGACCTTCCAATTTCTGCTGTTC 1092 |||||||||||||||| |||||| || ||||||||||||||||||||||| ||||||||| Sbjct 1120 CAAAGCTTTTAACTGAAAGGTCTCCAGTTGCCAGGTTTGACCTTCCAATTCCTGCTGTTC 1179 Query 1093 TAGCGTGTGGCCATGTTTACCATGCAGAATGCTTAGAGACAATGACAAGTGAGACAGAGA 1152 ||||||| ||||||||||||||||| | |||||||||||||||||||| ||| ||||||| Sbjct 1180 TAGCGTGCGGCCATGTTTACCATGCGGCATGCTTAGAGACAATGACAAATGAAACAGAGA 1239 Query 1153 AGTATGATCCTACATGTCCCATATGCGCAGAGACGCAAGTTACTAAATTATCGAGGAAAG 1212 ||||||||||||| |||||||||||| ||||||| || |||||||||||||||||||||| Sbjct 1240 AGTATGATCCTACGTGTCCCATATGCACAGAGACACAGGTTACTAAATTATCGAGGAAAG 1299 Query 1213 CTCTAAAGGCGGAG-CAAGAATTGAAGGCAACGAGTTACAAAAGATGTAAGAACCATGTG 1271 ||||||| || ||| || |||||||||||||||||||||||||| |||||||||| |||| Sbjct 1300 CTCTAAAAGCCGAGGCA-GAATTGAAGGCAACGAGTTACAAAAGGTGTAAGAACCGTGTG 1358 Query 1272 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTGTGTTCCAGAAACTAGGGAAGCGA 1331 |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| Sbjct 1359 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTATGTTCCAGAATCTAGGGAAACGA 1418 Query 1332 GAAGGAAAAGGTCTAAAGATAGATCCTAGTTC-AAGTACCAAAGGCTCCACGTCTAAGTC 1390 |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||| Sbjct 1419 GAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAA-TACCAAAGGCTCCACGTCTAAGTC 1477 Query 1391 TTTTATGAAATGGCACTTCGGTTCCGTCAGCGCCAAGTGGAGTAAAGTCAGGGATTCTAC 1450 ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| Sbjct 1478 TTTTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAAGCCAGGGATTCTAC 1537 Query 1451 CTCGAAGAAAAGCTTTTGGCCCAGACATAGTAATAAAAGATTAAGTCATACTTCTTCAAG 1510 ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| |||||| Sbjct 1538 CTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAAAAGATTAAGTCATTCTTTTTCAAG 1597 Query 1511 CGTTGAGAGCTTTAATCAGACAACATGACATAAAAGAGGACTGGCTTTGGATTAGAGAGA 1570 ||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||| | Sbjct 1598 CGTTGAGGGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGAAA 1657 Query 1571 AGATGCCTTTAACATTTTGTATCCCTCTT--CTTTTATTC-ATGTTTCATTGTCACATGG 1627 || | |||| |||||||||||||||| || ||||||||| |||||| | |||||||||| Sbjct 1658 AGCTCCCTTAAACATTTTGTATCCCTTTTTACTTTTATTCCATGTTTAAATGTCACATGG 1717 Query 1628 G-ACAACGGTGTGTATACCAGTGAAACAAAATTTGTCATTTTGGAGAATGCAGAAGaaa- 1685 | | || |||||| ||| ||||||||| || ||||||||| ||||||||||||||| Sbjct 1718 GGAAAATA-TGTGTA--CCAATGAAACAAACTT-GTCATTTTGTAGAATGCAGAAGAAAC 1773 Query 1686 aaaa 1689 |||| Sbjct 1774 AAAA 1777 Score = 270 bits (146), Expect = 3e-71 Identities = 211/239 (88%), Gaps = 17/239 (7%) Strand=Plus/Plus Query 1 AAAAAGGAGAGAGGAAGGGTGACGTGGCAC-AGTTCTCCTGTGACGCACCCAACCTCCG- 58 |||||| ||||||||||||||||||||||| | ||| |||| ||||||||||||||||| Sbjct 4 AAAAAGAAGAGAGGAAGGGTGACGTGGCACAATTTC-CCTGCGACGCACCCAACCTCCGT 62 Query 59 ---tctctctctc---t-------cATCTCCGTCGAGTAATTGAAATCGCTCTCAGCCGT 105 |||||||||| | |||||||||||||||||||||||| ||||||||||| Sbjct 63 CTCTCTCTCTCTCAGATCGGCGGCCATCTCCGTCGAGTAATTGAAATCTCTCTCAGCCGT 122 Query 106 TGGATTCGAATTCCGCCGTATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 165 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 123 TGGATTCGAATTCCGCCGCATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 182 Query 166 ATCTTAATTGTGATT-GCTACTGTGATACGTTCTTCAATGGTAAATTAGGAAGCACCAC 223 ||| ||||||| || |||||||||||| |||||||| ||||| ||||||||||||||| Sbjct 183 CTCTGAATTGTGGTTTGCTACTGTGATAAGTTCTTCAGTGGTAGATTAGGAAGCACCAC 241 > AT1G75400.1 | Symbols: | RING/U-box superfamily protein | chr1:28296919-28299686 FORWARD LENGTH=1948 Length=1948 Score = 575 bits (311), Expect = 5e-163 Identities = 662/825 (80%), Gaps = 49/825 (6%) Strand=Plus/Plus Query 641 TGATCTTCCATCGGGTCTCACACATTCGCTTCCTCCCAGATCAACTCCAACTAGACGTGC 700 ||||||| |||||| || ||| | || ||||||||| | ||| || ||| | ||||| || Sbjct 817 TGATCTTTCATCGGCTCACACGCGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGC 876 Query 701 TCGAG-GTTCACCTGGGCAGCAGTTGTTTAGGCAGGTTTCTGATAGTCAAACTTTGGGAC 759 ||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||| |||| Sbjct 877 TCG-GCGTTCACCTGGGCATCAGTTGTTTAGGCAGGTTTCTGATAGTCAAATTTTAGGAC 935 Query 760 TGAAATCACCC----AACAATTACTCAATATCTGAAGGAAGGTCGTCCTTTGTGCTTTCG 815 ||||||| ||| || ||||||||||| || ||||||||||||||||||||||||||| Sbjct 936 TGAAATC-CCCAATTAATAATTACTCAATCTCAGAAGGAAGGTCGTCCTTTGTGCTTTCG 994 Query 816 ACCTGTAGTAATGACA-CTGTCACTGGGTCCCA-TAATACTTCTTCTGAAGGTGGCTGGT 873 |||||||| |||||| | | |||||| ||||| || | ||||||||||||||||||| Sbjct 995 ACCTGTAGCAATGACTTC-GCCACTGGATCCCAGTACG-CATCTTCTGAAGGTGGCTGGT 1052 Query 874 CCATGAACGCCTTTTGTGAGCTCGTGTC-TCAATCTCAAAGGGAGAGATGGTCGTTTGAT 932 | |||||| | |||| |||||||||| | | | ||||||||||| |||||||| |||||| Sbjct 1053 CTATGAACACTTTTTCTGAGCTCGTGGCAT-ATTCTCAAAGGGATAGATGGTCCTTTGAT 1111 Query 933 AGTGAGCACTTAGGTTCTGGAATACG-AAGACTAAGTGGGTGTAGTAGTAGCAGATTCTC 991 || || ||||| |||||||| | ||| || ||||||||| || |||| ||||||||||| Sbjct 1112 AGCGAACACTTGGGTTCTGGCAGACGGAA-ACTAAGTGG-TG--GTAGCAGCAGATTCTC 1167 Query 992 GTGCTCCCCTTC--T-GTAGATCGGCAGACTTGTGG-GAATTGCTCAAAGCTTT-TAACT 1046 | ||||||||| | || |||| |||| |||||| | ||| |||||| || |||| Sbjct 1168 ATTCTCCCCTTCCGTTGTTGATCAGCAGGTTTGTGGAGC-TTGTTCAAAG-TTGCTAACC 1225 Query 1047 GAGAGGTCTTCAATTGCCAGGTTTGACCTTCCAATTTCTGCTGTTCTAGCGTGTGGCCAT 1106 ||||||||||| || |||| ||||| || ||||| |||||||||| || ||||| ||| Sbjct 1226 GAGAGGTCTTCTATAGCCACTTTTGAGCTCCCAATCGCTGCTGTTCTTGCCTGTGGTCAT 1285 Query 1107 GTTTACCATGCAGAATGCTTAGAGACAATGACAAGTGAGACAGAGAAGTATGATCCTACA 1166 |||||||| ||||| ||||||||||| ||||| | ||| | |||||||||||||||| | Sbjct 1286 GTTTACCACGCAGAGTGCTTAGAGACCATGACTACTGATATAGAGAAGTATGATCCTGCT 1345 Query 1167 TGTCCCATATGCGCA---GAG-ACGCAA-G--TTACTAAATTATCGAGGAAAGCTCTAAA 1219 |||||||||||| || | | | | || | || | ||| || | |||||||| ||||| Sbjct 1346 TGTCCCATATGCACAATTGGGGA-GAAACGGGTTGCGAAAATAACAAGGAAAGCCCTAAA 1404 Query 1220 GGCGGAG-CAAGAATTGAAGGCAACG-AGTTACAAAAGATGTAAGAACCATGTGGTAGAT 1277 |||||| | ||| ||||||| | ||| ||||||||||||| |||| |||||||||| Sbjct 1405 AGCGGAGGCG-GAAGCAAAGGCAAAGCAGT-ACAAAAGATGTAAAAACCGTGTGGTAGAT 1462 Query 1278 AGTTATG-TCCGCAGTGAATGTGAGGA-TCTTGTGTTCCAGAAACTAGGGAAGCGAGAAG 1335 ||||| | | | |||||||| || || | |||| ||||||||| | ||||| ||||||| Sbjct 1463 AGTTACGGTGAG-AGTGAATGCGATGAGT-TTGTATTCCAGAAAATGGGGAAACGAGAAG 1520 Query 1336 GAAAAGGTCTAAAGATAGATCCTAGTT-CAAGTACCAA-AGGCTCCACGTC-TAAGTCTT 1392 | |||| ||| ||| | || |||||| || ||| ||| || ||| | | |||||| | Sbjct 1521 GCAAAGCTCTCAAGCTGGAAGCTAGTTGCA-GTAGCAAGAG-CTCGTC-TAATAAGTCAT 1577 Query 1393 T-TATGAAATGGCACTTCGGTTCCGTCAGCGCCAAGTGGAGTAAA 1436 | | ||||||||||||| | ||| ||||| ||||||||| |||| Sbjct 1578 TCT-TGAAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAATAAA 1621 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83483506335 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5