BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472202
Length=1365
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19770.1 | Symbols: ATPUP14, PUP14 | purine permease 14 | ch... 2030 0.0
> AT1G19770.1 | Symbols: ATPUP14, PUP14 | purine permease 14 |
chr1:6832347-6833837 FORWARD LENGTH=1396
Length=1396
Score = 2030 bits (1099), Expect = 0.0
Identities = 1296/1388 (93%), Gaps = 25/1388 (2%)
Strand=Plus/Plus
Query 1 ACCAAATCTAATCGCCGACATACTTTGAACTCAAAT-CGCTTAGAATCTCCGACAATCAG 59
||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||
Sbjct 11 ACCAAATCTAATCGCCGACATACATTGAACTCAAATCCGCTCAGAATCTCCGACAATCAG 70
Query 60 TTCCAATCCATGGCTCAGAATCAACCACCAATTTTTCAGACCAATCCTCCAGAACAATTT 119
||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||||||||
Sbjct 71 TTCCAATCCATGGCTCAGAATCAACAACCTATTTTCCAGACCAAACCTCCAGAACAATTT 130
Query 120 GTGCAAATACCAATCAACATCGAGCGTGATTCGTCAACCACACGCATGAACCAAACCGGA 179
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 131 GTGCAAATACCTATCAACATCGAGCGTGATTCTTCAACCACACGCATGAACCAAACCGGA 190
Query 180 AACACAAACCGGAAACCAAACCACTGGCCAACGATCACCATCTCGATCATCTTCGTCATC 239
||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 191 AACACAATCCGGAAACCAAACCACTGGCCAACCATCACCATCTCAATCATCTTCGTCATC 250
Query 240 ATCGGCCAATCCATAGCGAAACTCCTCGAAAACTTCTACTACGACAAAATCAACCGAAGC 299
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 251 ATCGGTCAATCCATAGCGAAACTCCTCGAAAACTTCTACTACGACAAAACCAACCGAAGC 310
Query 300 GAATACAACGAAAACCGTCAAAACGATGGCGTTTGGACTCAATCTCTTCTCCAAACCGTT 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 311 GAATACAACGAAAACCGTCAAAACGATGGCGTTTGGACTCAATCTCTTCTCCAAACTGTT 370
Query 360 GGTTTCCCTCTTCTCCTTCTCCCTTTCATCATCTTCATCACCAAGAACAAACGCAATCAT 419
||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||
Sbjct 371 GGTTTCCCTCTCCTTCTTCTCCCGTTCCTCATCTTCATCACCAAGAACAAACGCAACCAC 430
Query 420 CATCAACAACCTCCGATCACTTCCGATTCAATCCACGTCAAATCCTTAGCCGTGATCTAC 479
|||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 431 CATCAACAACCTCCGATCACTTCCGATTCAATCCACTTAAAATCCTTAGCTGTGATCTAC 490
Query 480 ATTTGCATCGGAATTATCATGGCGGTCCAAGGAAGACTCGCCGCCATGGGAAAACTCGAG 539
||||||||||||||||||||| | || |||||||||||||| ||||||||||||||||||
Sbjct 491 ATTTGCATCGGAATTATCATGTCCGTTCAAGGAAGACTCGCAGCCATGGGAAAACTCGAG 550
Query 540 ATCCCATTTGGTATTTTTACTCTGATCTACACAACACAGCTCTTCTTCACTCCGATTTTC 599
|||||||||||| |||| ||||||||||||||| ||||||||||||||||||| || |||
Sbjct 551 ATCCCATTTGGTGTTTTCACTCTGATCTACACAGCACAGCTCTTCTTCACTCCTATCTTC 610
Query 600 GCAGCTTTCATCAACAAAATCAAATTCAATCGATGGGTTGTTATCTCTGTGATCTTAGCT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GCAGCTTTCATTAACAAAATCAAATTCAATCGATGGGTTGTTATCTCTGTGATCTTAGCT 670
Query 660 ATTATCACCGGAGCTCTTACTCTGTCTTCTTCATTCGGCGGTGAGCCTGATGAAGCAGAG 719
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 671 ATCATCACCGGAGCTCTTACTCTGTCTTCTTCATTCGGTGGTGAGCCTGATGAAGCAGAG 730
Query 720 GAGAATTACGCCAGAGGCTCATGGGCTGCTCTGTTCGCTGGAATCTGTTTCGCTCTTCTT 779
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GAGAATTACGCTAGAGGCTCATGGGCTGCTCTGTTCGCTGGAATCTGTTTCGCTCTTCTT 790
Query 780 CTCTGTAACATCCAAAACGTCTTCGACAGTTACATCTTCAAAAGAACCGAATCGACCAAT 839
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 791 CTCTGTAACATCCAAAACGTCTTCGACAGTTACATCTTCAAACGAACTGAATCAACCAAT 850
Query 840 AAAAAACCAAGCTTTGCCTCTGTTTTCGAAGTTATAATCTTCTCTTCCCTCGTCGCCACA 899
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| || ||
Sbjct 851 CAAAAACCAAGCTTTGCCTCTGTTTTCGAAGTTATTATCTTCTCTTCTCTCGTTGCTACG 910
Query 900 ATCATCTCCGTCGTGGGTCTGCTTATCGCCGGCGAGCAACACGAATTAAAGAGGGAGATG 959
|||||||||||||||||||||||||| ||||| ||||||||||| || |||||||| |||
Sbjct 911 ATCATCTCCGTCGTGGGTCTGCTTATAGCCGGTGAGCAACACGATTTGAAGAGGGAAATG 970
Query 960 AATGGATTCTC-AAAGGGTAAAGGTTCTTATGTGATGGCTATGGTTGGTCAAGCTGTGTC 1018
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 971 AATGGATTCTCGAAAGGG-AAAGGTTCTTATGTGATGGCTATGGTTGGTCAAGCTGTTTC 1029
Query 1019 GTGGCAGGTCTATTGGGTTGGGATTGTGGGACTTGTCTACTCTGTTTCGAGCGTGTTGTC 1078
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1030 GTGGCAGGTCTATTGGGTTGGGATTGTTGGACTTGTCTACTCTGTTTCGAGCGTGTTGTC 1089
Query 1079 GAATGTGATCAGTGTTATTACATGGCCGATTGTGTCGGTTCTTGTGGTGATCTTCTTCAA 1138
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1090 GAATGTGATCAGTGTCATTACGTGGCCGATTGTGTCGGTTCTTGTGGTGATCTTCTTCAA 1149
Query 1139 TTTCATGGATGATGAGTTTGATGCCTTCAAAGGTGTCGCCTTGGTTACTGCAGTCTTAAG 1198
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1150 TTTCATGGATGATGAGTTTGATGCCTTCAAAGGTGTTGCCTTGGTTACTGCCGTCTTAAG 1209
Query 1199 CGCCGCAGCTTATTTCTTTAGGCTTCACAAAGAGAATCGTATGGCTAACTAGGTTTGGAT 1258
||| ||||||||||||||||||||||||||||| |||||||||||| | |||||||||||
Sbjct 1210 CGCTGCAGCTTATTTCTTTAGGCTTCACAAAGACAATCGTATGGCTTATTAGGTTTGGAT 1269
Query 1259 TC------CT-----GAA--TTTCT------CC-TTGATTTTTTGTGTTTATATC-AATC 1297
|| || ||| ||| | || |||||||||||||| |||||| ||||
Sbjct 1270 TCTTGAATCTCTAAAGAAAGTTTTTTTATTTCCCTTGATTTTTTGTGTGTATATCTAATC 1329
Query 1298 ATATGTTCTAATTGTTTATCTTGTCTTAAGTGTAAGTGTGTAATAGCTTTGGTTATAGAT 1357
|||| ||||| |||||||||||| | |||||||||||||||| ||||||||||||||||
Sbjct 1330 ATATATTCTAGGTGTTTATCTTGTGT-AAGTGTAAGTGTGTAACAGCTTTGGTTATAGAT 1388
Query 1358 GTAAATTT 1365
||||||||
Sbjct 1389 GTAAATTT 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67218529755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5