BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472211
Length=1579
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19860.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 2122 0.0
> AT1G19860.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr1:6891429-6894736 REVERSE LENGTH=1803
Length=1803
Score = 2122 bits (1149), Expect = 0.0
Identities = 1490/1639 (91%), Gaps = 85/1639 (5%)
Strand=Plus/Plus
Query 1 AGATAAAATGACGATGGTGACCATAAGAAGAAGAACCCAGAGGATCTAGGGCTTCACAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGATAAAATGACGATGGTGACCATAAGAAGAAGAACCCAGAGGATCTAGGGCTTCACAAT 60
Query 61 CGCTTCCAtctctcaactctctctctcGACGGATTTTAGCTTACAGATGTttcttctcct 120
|| || | || | |||||| |||||||||| |||||||| |||||||||| ||||||
Sbjct 61 CGATT-C--CT-T---CTCTCTATCTCGACGGA-TTTAGCTTGCAGATGTTTCGTCTCCT 112
Query 121 ctctgg-------gattcatcatcttctcttcttaaattcttc-ctcttttcCTGAAAAA 172
|||||| |||||||||||||||||||||||||| || |||||||||| | ||
Sbjct 113 CTCTGGATTCATTAATTCATCATCTTCTCTTCTTAAATTC-TCTATCTTTTCCTG-ACAA 170
Query 173 AGTTAGGGTTTTTTGATAACTTGGGATGAG---AA-----T-AA--T---GA--T-GC-- 213
||||||||||||| ||||||| |||||||| || | || | || | ||
Sbjct 171 AGTTAGGGTTTTTCGATAACTCGGGATGAGAATAATTGGTTCAATCTAAAGAGCTGGCTT 230
Query 214 T--TCAA-T-CT-A-ATTTAAAAGGGTAATTGGACCTTCCTG----AA---T-C---AAA 256
| | || | | | ||||||||||||||||||||||||||| || | | |||
Sbjct 231 TGATAAATTATTGAGATTTAAAAGGGTAATTGGACCTTCCTGAATCAATTTTCCTGGAAA 290
Query 257 AAGAATTGATTTTTAGATTGAAAAAAGAAGTGAGAGTTTCTGTAACTATGAGGGCATTGC 316
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 291 AAGAATTGATTTTTAGATTG-AAAAAGAAGTGAGAGTTTCTGTAACTATGAGGGCATTGC 349
Query 317 ACAAAAGGGTATCTTGGCCACCAGATTTTAAACTTTGTCAGGTACGGCTATTCATATCAG 376
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 ACAAAAGGGTATCGTGGCCACCAGATTTTAAACTTTGTCAGGTACGGCTATTCATATCAG 409
Query 377 AGGATTCACCTTCACAAGTTGGATCAGAGTCTCAAGATCACCTGCAAGCAAAGTCACCAT 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 AGGATTCACCTTCACAAGTTGGATCAGAGTCTCAAGATCACCTGCAAGCAAAGTCACCAT 469
Query 437 TGGCTTCACATCCAAGTGATGATAATCTACCACCTGGTTTTGGTGGACCTCTTT-CTGCG 495
|||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct 470 TGGCTTCACATCCAAGTGATGATAATCTGCCACCTGGTTTTGGTGGACC-CTTTTCTGCG 528
Query 496 AATGAGTCCCAGATTAAGTTATCAGACATCCCAGTAATAAAGTGGAAATCCTCCGTCCGG 555
|||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |
Sbjct 529 AATGAGTCCCAGATTAAGTTATCAGATATCCCACTAATAAAGTGGAAATGCTCCGTCCAG 588
Query 556 ATTCTGCTAGAT-GAGGAATGGAGAGTGGTTGCAGGGGACGAAAGCAAAGAAGTGGAGGT 614
|||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 589 ATTCTGCTAGATCG-GGAATGGAAAGTGGTTGCAGGGGACGAAAGCAAAGAAGTGGAGGC 647
Query 615 CCAAAATCAGAGGGAATTGAGAGTTCTTGAAGCATTTTATCCTGGCGCATCATCTATTCC 674
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CCAAAATGAGAGGGAATTGAGAGTTCTTGAAGCATTTTATCCTGGCGCATCATCTATTCC 707
Query 675 TCCAAACCCTTCGGTTCCAGCTGATGTTGAGAAC-CA--TCATGATGATCAGCAAACCAT 731
||||||||||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 708 TCCAAACCCTTCGGTTCCAGCTGATGTTGAGGACTCACATCATGATGATCAGCAAACCAT 767
Query 732 TGTCATACCCATCCTACCTGTAGAAGACGATGACATAGCGTTGGATTCAGCATCTGATTT 791
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 768 TGTCATACCCATCCTACCTGTAGAAGATGATGACATAGCGATGGATTCAGCATCTGATTT 827
Query 792 CCCAACCCAATCTGGCGTGGATGTGGGAACAGATCCATCAATAACGGATGAGAATACATC 851
||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 828 CCCAACCCAATCTGGCGTGGATGTGGGAACAGAGCCATCAATAACCGATGAGAACACATC 887
Query 852 AACTTCTTCAATCCTCCCTGCAGGGCCAGAGATAATGGCTGCATTATCTGCAATCTCAAA 911
||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 888 AACTTCTTCAACCCTCCCTGCAGGGCCAGATATAATGGCTGCGTTATCTGCAATCTCAAA 947
Query 912 CAGCAAAGAACAAGGCAGCAGCATGATCGACCAAGATCTGCTTATTAAAATCCTAAGCAA 971
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 948 CAGCAAAGAACAAGGCAGTA---TGATCGACCAAGATCTGCTTATTAAAATCCTAAGCAA 1004
Query 972 CCCTAAGTTGGTCGAGAATCTTGTTGCAAATTC-TGGCAGTGCAGGTTCAGTTTCCTCCA 1030
||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||
Sbjct 1005 CCCTAAGTTGGTCGAGAATCTTGTTGCAAAT-CGTGGCAGTGCAGGTTCAGTCTCCTCCA 1063
Query 1031 ACGCAGGTAGCCTCTACCCATCTTCAACACATGAAGCCAATGGAGTAGTAACTACAGCAC 1090
|| || ||||||||||| |||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1064 ACACAAGTAGCCTCTACTCATCTTCAACACATGAAGCCAACGGAGTAGTAACCACGGCAC 1123
Query 1091 CCACTTACTCGAATGGACAATTTTACCCTCAGCCATCCATAACCCATATTCCTCCCATGG 1150
| | || ||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||
Sbjct 1124 CTATTTCCTCAAATGGACAATTTTACGCTCAGCCACCCATAACTCATATTCCTCCCATGG 1183
Query 1151 CGTTTACTCCTC----T----A-GACCAACCAAACTATGGAGCACCTCCAGCAAGAGATG 1201
||| |||||||| | | |||||||| |||||||||||||| |||||||||||||
Sbjct 1184 CGTATACTCCTCACGCTCCTCAAGACCAACCGAACTATGGAGCACCGCCAGCAAGAGATG 1243
Query 1202 CTAGTTATTACAAGAACCTGATTCAGCAACATGGCGGGGATAGACAAGAGATGCCGCCAG 1261
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1244 CTAGTTATTACAAGAACCTGATTCAGCAACATGGCGGGGATAGACAAGAGACGCCGCCAG 1303
Query 1262 TTCAACAACATCTTGGTTATCGTTACAACCCCCAACCTGGAGGA---CCTAACACGGAGA 1318
||||||| | || |||||||| ||||||| ||||||||||||| |||||| ||||||
Sbjct 1304 TTCAACATC-TC--GGTTATCGATACAACCTCCAACCTGGAGGAGGACCTAACCCGGAGA 1360
Query 1319 TGGTAAATAGCAATACTAATAACCAGAGGCCAAGGGACTCAAAACCCAAGATAATGAAGC 1378
|||||||||||| || ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1361 TGGTAAATAGCAGTAATAATAACCAGAGGCCAAGGGATTCAAAACCCAAGATAATGAAGG 1420
Query 1379 CTTGCATGTACTTCAACAGTACGAGGGGTTGTCGCCATGGAGCCAATTGTTTGTACCAGC 1438
||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||
Sbjct 1421 CTTGCATGTACTTCAACAGCGCAAGGGGTTGTCGCCATGGAGCTAATTGTATGTACCAGC 1480
Query 1439 ACGATGCTACTACACCTTACCAGCCGAGGAATCTAAATAATGGTAATATCAACACTTCTG 1498
|||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1481 ACGATGCTAC-AC-CCT-ACCAGCCGAGGAATCTAAACAATGGTAATATCAACACTTCTG 1537
Query 1499 AGATGCAGAATGCAAAAAGAATGAGATTTGACAGAGACTGATGCAGAATTAGCATACCAC 1558
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1538 ATATGCAGAATGCAAAAAGAATGAGATTTGACAGAGACTGATGCAGAATTAGCATACCAC 1597
Query 1559 ACATGCTCTTTGCCTCTTG 1577
||||||||| |||||||||
Sbjct 1598 ACATGCTCTCTGCCTCTTG 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77961446385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5