BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472217 Length=1782 Score E Sequences producing significant alignments: (Bits) Value AT1G19920.1 | Symbols: APS2, ASA1 | Pseudouridine synthase/arch... 2649 0.0 > AT1G19920.1 | Symbols: APS2, ASA1 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | chr1:6914613-6916805 REVERSE LENGTH=1801 Length=1801 Score = 2649 bits (1434), Expect = 0.0 Identities = 1614/1701 (95%), Gaps = 11/1701 (1%) Strand=Plus/Plus Query 1 AAAAAGCAAAGGAGCCAAAAGTGGAATAACGTGTGGATCTTCTTCTTCTTCCTCCAACAT 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2 AAAAAGCAAAGGAGCCAAAAGTGGAATAACGTGTGGATCTTCTTCTTCCTCCTCCAACAT 61 Query 61 GTTCGTCCAAATCTCACCTTCACTGTTCACTCTCTACTCTCCACTTCTCTCGCTTTTTTC 120 |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 62 GTTCCTCCTAATCTCACCTTCACTGTTCACTCTCTACTCTCCACTTCTCTCGCTTTTGTC 121 Query 121 CCAAAGTAGCTATCTTCTTCACCAAGATCCATGTCTCTTCTGATCAGATCCTCCTCTTAT 180 |||||||||||| |||||| |||||| |||||||||| |||||||| |||||||| Sbjct 122 CCAAAGTAGCTA---TCTTCAACAAGATTCATGTCTCTTATGATCAGA---TCCTCTTAC 175 Query 181 GTTTCTCACCTCACTCTCTTCCAACCTAGAAATTCAAAACCATCCTCTTTCACCAATCAA 240 ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 176 GTTTCTCACATCACTCTCTTCCAACCTAGAAACTCAAAACCATCCTCTTTCACCAACCAA 235 Query 241 ATCTCCTTCGTTTCTTCTTTC-AATCACAACCCTTTTCTCAATTTGGTCTATAAACGAAA 299 ||||||||| |||| || ||| ||| |||||||||||||||||||||||||||||||||| Sbjct 236 ATCTCCTTCCTTTCCTC-TTCTAATAACAACCCTTTTCTCAATTTGGTCTATAAACGAAA 294 Query 300 CCCAACAATGCAATCTGTTTCGAAAATGACTGTTAAGAGCTCATTGATTGATCCCGACGG 359 || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 295 CCTAACAATGCAATCTGTTTCGAAAATGACTGTTAAGAGCTCGTTGATTGATCCCGACGG 354 Query 360 TGGTGAATTGGTGGAATTGATTGTACCGGAATCTGAAATCGGAGCGAAGAGAGCTGAATC 419 ||||||||||||||||||||||||||||||| |||| || |||| ||||| ||||||||| Sbjct 355 TGGTGAATTGGTGGAATTGATTGTACCGGAAACTGAGATTGGAGTGAAGAAAGCTGAATC 414 Query 420 AGAGACGATGCCGAAAGTGAAGCTGACGAAGATTGATCTTGAGTGGGTTCATGTGATTAG 479 |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 415 AGAGACGATGCCTAAAGTGAAGCTGAATCAGATTGATCTTGAGTGGGTTCATGTGATTAG 474 Query 480 TGAAGGCTGGGCTAGTCCTTTAAAAGGGTTCATGAGAGAAGATGAGTATCTACAAAGTTT 539 |||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 475 TGAAGGTTGGGCTAGTCCTTTAAAAGGGTTCATGAGAGAAGATGAGTATTTGCAAAGTTT 534 Query 540 GCATTTTAATTCTCTTAGATTAAAAAATGGGACTTTTGTGAATATGTCTCTTCCTATTGT 599 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 535 GCATTTTAATTCTCTTAGGTTAAAAAATGGGACTTTTGTGAACATGTCTCTTCCTATTGT 594 Query 600 TCTTGCTATTGATGAAGAGACTAAGGAACAAATCGGATCATCCAAGAATGTTGCTCTTGT 659 ||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||| Sbjct 595 TCTTGCTATTGATGATGATACTAAGGAACAGATCGGATCATCTGAGAATGTTGCTCTTGT 654 Query 660 TAGCCCTCAAGGAGATATCATTGGTTCTCTTCGAAGTGTAGAGATATACAAACACAACAA 719 | |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| || Sbjct 655 TTGCCCTCAAGGAGATATCATTGGTTCTCTCCGAAGTGTGGAGATTTACAAACACAATAA 714 Query 720 GGAAGAGAGGATAGCTCGGACTTGGGGAACTACTACTCCAGGATTGCCTTATGTGGAAGA 779 |||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||||| Sbjct 715 GGAAGAAAGGATAGCTAGAACTTGGGGAACTACTTCTCCAGGATTGCCTTATGTGGAAGA 774 Query 780 ATACATTACTCCATCTGGAAACTGGTTAATTGGTGGTGATTTAGAAGTTTTT-AAGCCGA 838 ||| ||||||||||||||||||||| | |||||||||||||||||||||||| || |||| Sbjct 775 ATATATTACTCCATCTGGAAACTGGCTGATTGGTGGTGATTTAGAAGTTTTTGAA-CCGA 833 Query 839 TTAAGTATAATGATGGGCTTGATCATTATAGGCTATCTCCTAAACAGCTTAGGGAAGAGT 898 |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 834 TTAAGTATAACGATGGGCTTGATCATTACAGGCTCTCTCCTAAACAGCTTAGGGAAGAGT 893 Query 899 TTGATAATCGTCAAGCGGATGCTGTTTTTGCGTTTCAGTTAAGGAATCCGGTGCACAATG 958 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 894 TTGATAATCGTCAAGCAGATGCTGTTTTTGCGTTTCAGTTAAGGAATCCTGTGCACAATG 953 Query 959 GACATGCTCTGTTGATGAATGATACCCGGAAAAGGCTTTTGGAAATGGGTTACAAGAACC 1018 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 954 GACATGCTCTGTTGATGAATGATACACGGAAAAGGCTTTTGGAAATGGGGTACAAGAACC 1013 Query 1019 CTATTCTCTTACTTCATCCTTTAGGAGGTTTCACAAAAGCTGATGATGTTCCTCTTGATG 1078 || ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1014 CTGTTCTCTTGCTTCATCCTTTAGGAGGTTTCACTAAAGCTGATGATGTTCCTCTTGATG 1073 Query 1079 TTAGAATGGAACAACATAGCAAGGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTA 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1074 TTAGAATGGAACAACATAGCAAGGTTCTAGAAGATGGAGTTCTTGACCCGAAGACTACTA 1133 Query 1139 TTGTCTCGATATTTCCATCACCGATGCACTATGCTGGTCCAACTGAAGTTCAATGGCACG 1198 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1134 TTGTCTCGATCTTTCCGTCACCGATGCACTATGCTGGTCCAACTGAAGTTCAATGGCACG 1193 Query 1199 CCAAGGCAAGAATTAACGCCGGTGCTAATTTCTACATTGTAGGTCGTGATCCTGCAGGAA 1258 |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1194 CCAAGGCAAGGATTAACGCTGGTGCTAATTTCTACATTGTAGGTCGTGATCCTGCAGGAA 1253 Query 1259 TGGGCCACCCTACTGAGAAGAGAGATCTATATGATCCTGATCATGGAAAGAAAGTCTTAA 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1254 TGGGCCACCCTACTGAGAAGAGAGATCTATATGATCCTGATCATGGAAAGAGAGTCTTAA 1313 Query 1319 GCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGGTTGCAGCTTACGATA 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 GCATGGCCCCTGGACTTGAGAAACTCAATATTCTTCCATTTAGGGTTGCAGCTTACGATA 1373 Query 1379 CAATCGAGAAGAAGATGGCGTTTTTCGATCCCTCTCGTGCAAAAGAGTTTCTTTTCATTT 1438 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1374 CAATCGAGAAGAAGATGGCGTTTTTCGATCCTTCTCGTGCAAAAGAGTTTCTTTTCATTT 1433 Query 1439 CTGGAACAAAGATGCGAACCTATGCAAGAACAGGGGAGAATCCTCCAGATGGGTTTATGT 1498 ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 1434 CTGGAACAAAGATGCGAACTTATGCAAGAACAGGGGAGAATCCTCCAGATGGATTTATGT 1493 Query 1499 GTCCAAGCGGATGGAATGTTCTTGTCAGATACTATGAGAGCTTGCAAGAAAGCGAAGCCA 1558 |||| || ||||||||||||||||||| ||||||||||||||||||||| |||||||| | Sbjct 1494 GTCCGAGTGGATGGAATGTTCTTGTCAAATACTATGAGAGCTTGCAAGAGAGCGAAGCAA 1553 Query 1559 AACAACAAGCCGTTGTTTCAGCCTAAAGAATCCAATTGCATCTCTTTCAAAACTGAAGCT 1618 |||||||||||||||||||||||||||||||||| |||||||||||||| || |||| || Sbjct 1554 AACAACAAGCCGTTGTTTCAGCCTAAAGAATCCAGTTGCATCTCTTTCAGAATTGAAACT 1613 Query 1619 CCTTAGTGATCTATATAAGGCTTTTGTTTCACCTTTCATTGTTTTGTTTAAACTACTACC 1678 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1614 CCTTAGTGATCTATATGAGGCTTTTGTTTCACCTTTCATTGTTTTGTTTAAATTACTACC 1673 Query 1679 -TTGGATCCATGTTTTTGTCT 1698 |||||||||||||||||||| Sbjct 1674 CTTGGATCCATGTTTTTGTCT 1694 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88152157020 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5