BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472228
Length=1372
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20020.1 | Symbols: ATLFNR2, FNR2 | ferredoxin-NADP(+)-oxido... 2274 0.0
> AT1G20020.1 | Symbols: ATLFNR2, FNR2 | ferredoxin-NADP(+)-oxidoreductase
2 | chr1:6942717-6945018 FORWARD LENGTH=1394
Length=1394
Score = 2274 bits (1231), Expect = 0.0
Identities = 1329/1376 (97%), Gaps = 8/1376 (1%)
Strand=Plus/Plus
Query 1 ACGAGATACTCTCTTC-TACAAACCTCATCCACCCAAACACAAATGtcttctaatccttc 59
|||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ACGAGATACTCTCTTCTTA-AAACCTCATCCACCCAAACACAAATGTCTTGTAATCCTTC 59
Query 60 tcttatctttctccttctgattcctttttatattcctctgattttttctctcaatttgat 119
|||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 60 TCTTATCTTTCTCCTTGTGATTCCTTTTTATATTCCTCTGATATTTTCTCTCAGTTTGAT 119
Query 120 ttcatttGCTCTGCAATGGCTACTACCATGAATGCTGCTGTTTCTCTCACATCTTCAAAC 179
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 120 CTCATTTGCTCTGCAATGGCGACTACCATGAATGCTGCTGTTTCTCTCACATCTTCAAAC 179
Query 180 TCTTCTTCGTTTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTAGTAAG 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 180 TCTTCTTCTTTTCCCGCTACAAGTTGTGCCATTGCTCCTGAAAGGATCAGGTTTACTAAG 239
Query 240 GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAAGTAAAAGAGTGTTTTCCATAAGA 299
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 240 GGTGCTTTTTACTACAAAAGCAACAATGTAGTGACAGGTAAAAGAGTGTTTTCCATAAAA 299
Query 300 GCACAAATCACAACAGAAACAGATACTCCTACTCCTGCCAAGAAAGTTGAGAAAGTGTCA 359
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 300 GCACAAATCACAACAGAAACAGATACTCCTACTCCTGCAAAGAAAGTAGAGAAAGTGTCA 359
Query 360 AAGAAGAATGAGGAAGGTGTGATTGTTAATAGGTACAGACCAAAGGAGCCTTACACTGGA 419
|||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 360 AAGAAGAACGAGGAAGGTGTGATTGTTAACAGGTACAGACCAAAAGAGCCTTACACTGGA 419
Query 420 AAATGCCTTCTCAACACCAAAATCACAGCTGATGATGCTCCTGGAGAGACCTGGCACATG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AAATGCCTTCTCAACACCAAAATCACAGCTGATGATGCTCCTGGAGAGACCTGGCACATG 479
Query 480 GTTTTGAGCCATGAAGGAGAAATCCCGTACAGAGAAGGACAATCTGTTGGTGTGATTGCA 539
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTTTCAGCCATCAAGGAGAAATCCCGTACAGAGAAGGACAATCTGTTGGTGTGATTGCA 539
Query 540 GATGGAATTGACAAGAATGGAAAGCCTCACAAGGTCAGACTTTACTCGATAGCGAGCAGC 599
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 540 GATGGAATTGACAAGAATGGAAAGCCTCACAAGGTCAGACTTTACTCCATTGCAAGCAGC 599
Query 600 GCTCTTGGAGATCTCGGCAATTCTGAAACCGTTTCTTTGTGTGTGAAAAGACTTGTCTAT 659
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 600 GCTCTTGGAGATCTCGGCAATTCTGAAACCGTTTCTTTGTGTGTTAAAAGACTTGTTTAT 659
Query 660 ACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTGTGATTTGGCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACTAATGACCAAGGAGAGACTGTTAAAGGAGTTTGCTCAAATTTCTTGTGTGATTTGGCA 719
Query 720 CCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAGAAATGCTTATGCCAAAGGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CCCGGAAGTGATGTTAAGCTGACTGGTCCTGTAGGCAAAGAAATGCTTATGCCAAAGGAT 779
Query 780 CCAAACGCCACTGTTATTATGCTTGCCACAGGGACAGGAATTGCTCCTTTCCGGTCTTTC 839
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CCAAACGCCACCGTTATTATGCTTGCCACAGGGACAGGAATTGCTCCTTTCAGGTCTTTC 839
Query 840 TTATGGAAGATGTTCTTTGAGAAACATGATGACTACAAGTTCAATGGCTTAGCTTGGTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTATGGAAGATGTTCTTTGAGAAACATGATGACTACAAGTTCAATGGCTTAGCTTGGTTG 899
Query 900 TTCTTGGGTGTACCAACCACTAGCTCATTGCTCTACCAAGAGGAGTTTGATAAGATGAAA 959
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 900 TTCTTGGGTGTACCAACCACTAGCTCTTTGCTCTACCAAGAGGAGTTTGATAAGATGAAA 959
Query 960 GCAAAGGCCCCCGAGAACTTCAGGGTGGATTACGCGATAAGCAGAGAACAAGCGAACGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GCAAAGGCCCCCGAGAACTTCAGGGTGGATTACGCGATAAGCAGAGAACAAGCGAACGAT 1019
Query 1020 AAAGGAGAGAAAATGTATATCCAGACTCGGATGGCGCAGTACGCAGCTGAACTATGGGAG 1079
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1020 AAAGGAGAGAAAATGTATATCCAGACTCGGATGGCGCAATACGCAGCTGAGTTATGGGAG 1079
Query 1080 TTGTTGAAGAAAGACAACACTTTTGTTTACATGTGTGGACTCAAGGGAATGGAGAAAGGA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTGTTGAAGAAAGACAACACTTTTGTTTACATGTGTGGACTCAAGGGAATGGAGAAAGGA 1139
Query 1140 ATTGATGACATTATGGTCTCATTGGCTGCAAATGACGGTATTGACTGGTTTGACTATAAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1140 ATTGATGACATTATGGTCTCATTGGCTGCAAATGACGGTATTGACTGGTTTGATTACAAG 1199
Query 1200 AAGCAGTTGAAGAAGGCAGAGCAATGGAACGTTGAAGTCTACTGATCAGAA-GCCCTATG 1258
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||
Sbjct 1200 AAGCAGTTGAAGAAGGCAGAGCAATGGAACGTTGAAGTCTACTGATCAAAAAGCCTT-TG 1258
Query 1259 ACATT-CTATAGCAA-GTATAGCTGAACAAAACTGTAATTCTCTGCTTCCGAAATTCTGT 1316
||||| || |||||| |||||||||||||||||||||||| || ||||| ||| ||||||
Sbjct 1259 ACATTTCTGTAGCAAAGTATAGCTGAACAAAACTGTAATTTTC-GCTTCTGAATTTCTGT 1317
Query 1317 AATGTGAAGATAAGtttttttAGATATATTATACTaaaaaaaGAGTTCTTTAATCA 1372
| | |||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1318 ATTTTGAAGATAAGTTTTTT-AGATATGTTATACTAAAAAAAGAGTTCTTTAATCA 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67569933570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5