BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472249
Length=1118
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20190.1 | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA 1... 1511 0.0
> AT1G20190.1 | Symbols: ATEXPA11, EXP11, ATEXP11, ATHEXP ALPHA
1.14, EXPA11 | expansin 11 | chr1:6998489-6999817 REVERSE LENGTH=1139
Length=1139
Score = 1511 bits (818), Expect = 0.0
Identities = 1039/1137 (91%), Gaps = 49/1137 (4%)
Strand=Plus/Plus
Query 1 TACTACACTAATTTACACTCACTTCCCACCTTTATTTAAACAACTCTC-TCTCCTTCACT 59
||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 2 TACTACATTAGTTTACACTCGCTTCCCACCTTTATTTAAACAACTCTCACCTCCTTCACT 61
Query 60 CGatcatcatcatcatcatcatcatAATCTCTTTCTTTGTTCGAAAAATTATAATCATGT 119
|||||||||||||||||||| || | | || ||| ||| |||| | ||||||||||
Sbjct 62 CGATCATCATCATCATCATC-TC-T--T-TC-TTC----TTCCAAAAGTCATAATCATGT 111
Query 120 CAAAGTCTCTAGCTGGCTTGGCGGTTTTGGCCACTCTTTTTATTGCGGTTAACGCGTTTA 179
|||||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||
Sbjct 112 CAAAGTCTCTAGCTGGATTGGCGGTTTTGGCCGCTCTTTTTATTGCGGTTGATGCGTTTA 171
Query 180 AGCCTTCTGGTTTAACTAATGGTCACGCTACGTTCTATGGAGGAAGTGACGCTTCTGGAA 239
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 172 GGCCTTCTGGTTTAACTAATGGTCACGCTACATTCTATGGAGGAAGTGACGCTTCTGGAA 231
Query 240 CAATGGGTGGAGCTTGTGGGTACGGAGATCTTTACTCGGCGGGGTACGGGACAATGACAG 299
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 232 CAATGGGTGGAGCTTGTGGTTACGGAGATCTTTACTCGGCGGGGTACGGGACAATGACGG 291
Query 300 CGGCGTTAAGCACGGCTCTCTTTAACGACGGAGCTTCTTGCGGCGAATGCTATAGGATAA 359
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct 292 CGGCGTTAAGCACGGCTCTGTTCAACGACGGAGCTTCTTGCGGAGAATGCTATAGGATAA 351
Query 360 CGTGTGATTACGCGGCGGACTCACGGTGGTGCTTGAAAGGAGCTTCTGTGGTTATTACAG 419
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGTGTGATCACGCGGCGGACTCACGGTGGTGCTTGAAAGGAGCTTCTGTGGTTATTACAG 411
Query 420 CCACTAACTTTTGCCCACCAAACTTTGCCTTGCCTAATAACAACGGTGGTTGGTGCAATC 479
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 412 CCACTAACTTTTGCCCACCAAACTTTGCTTTGCCTAACAACAACGGTGGTTGGTGCAATC 471
Query 480 CGCCGCTCAAACATTTCGATATGGCACAACCCGCTTGGGAAAAGATCGGAATTTACAGAG 539
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 472 CGCCGCTTAAACATTTCGACATGGCACAACCCGCTTGGGAAAAGATCGGAATTTACAGAG 531
Query 540 GAGGAATTGTTCCCGTCGTTTTCCAAAGAGTAAGCTGTTACAAGAAAGGAGGAGTGAGAT 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 532 GAGGAATCGTTCCCGTCGTTTTCCAAAGAGTAAGCTGTTACAAGAAAGGAGGAGTTAGAT 591
Query 600 TCAGAATAAACGGAAGAGACTACTTCGAGCTAGTCAACATTCAAAATGTAGGAGGAGCAG 659
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 592 TCAGAATAAACGGAAGAGACTACTTCGAGCTAGTGAATATTCAAAATGTAGGAGGAGCAG 651
Query 660 GTTCGATTAAATCTGTCTCCATCAAAGGATCAAAGACTGGTTGGTTAGCCATGTCTCGTA 719
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GTTCTATTAAATCTGTATCCATCAAAGGATCAAAGACTGGTTGGTTAGCCATGTCTCGTA 711
Query 720 ATTGGGGAGCTAATTGGCAATCAAATGCTTATCTCGATGGTCAATCTCTCTCTTTCTCCA 779
| |||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||
Sbjct 712 ACTGGGGAGCTAATTGGCAATCGAATGCTTATCTAGATGGTCAAGCTCTCTCTTTCTCCA 771
Query 780 TTACCACTACCGATGGTGCTACAAGAGTCTTCCTCAATGTTGTTCCTTCTTCCTGGTCTT 839
|||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 772 TTACCACTACTGATGGTGCTACTAGAGTCTTTCTCAATGTTGTTCCTTCTTCTTGGTCTT 831
Query 840 TTGGACAGATTTATTCTTCCAGCGTTCAGTTTTAAGttttttttttttttttttGTGGGT 899
||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 832 TTGGACAGATTTATTCTTCCAACGTTCAGTTTTAAGTTTTTTTTTTT-------GT---T 881
Query 900 TCTGTCTGAAATATTATTGGCAGTGGTCGCGCTCTGAGTCTGTTTCTTAACTCCCTGAGC 959
| ||| |||||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 882 T-TGTATGAAATATCATTGGCAGTGGTCGCGCTTTGAGTCTGTTTCTTTTCTCCCTGAGC 940
Query 960 GACCCGCC-TCTT------------CT---GGTTTGATGGGTCTGTTAATACAGAAGACC 1003
|||||||| |||| || ||| ||||||||||||||||||| ||||||
Sbjct 941 GACCCGCCCTCTTTGTTTTTTTTATCTTATGGTATGATGGGTCTGTTAATACAAAAGACC 1000
Query 1004 CGATTTGATTTGAGGAAAATATGATTATATGAAATGTATTGTATATTTGTATTTGAATGT 1063
|||| |||||||||| | |||||||||||||| || |||| | ||||||||||||
Sbjct 1001 CGATATGATTTGAGGGTA-TATGATTATATGAA--GT---GTAT-T--GTATTTGAATGT 1051
Query 1064 TTCAAACTCGAAAA-GATTCTGTAGCAAAAGGAGTTT-AACACATTTGTACTTGGTT 1118
|||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 1052 TTCAGACTCGAAAAAGATTCTGTAGCAAAAGGAGTTTTAACACATTTGTACTTGGTT 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54818995140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5