BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472262
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20340.1 | Symbols: DRT112, PETE2 | Cupredoxin superfamily p... 1194 0.0
> AT1G20340.1 | Symbols: DRT112, PETE2 | Cupredoxin superfamily
protein | chr1:7042429-7043363 REVERSE LENGTH=935
Length=935
Score = 1194 bits (646), Expect = 0.0
Identities = 798/867 (92%), Gaps = 27/867 (3%)
Strand=Plus/Plus
Query 1 CCACATAAAAACTCATAAACCTCTATCGAACCAAAGCTAAAC-----AC----GA-CCAA 50
||||||||||||||||||| ||| |||||||||||||||||| || | ||||
Sbjct 1 CCACATAAAAACTCATAAA-CTCGATCGAACCAAAGCTAAACGAAAAACTTAAAACCCAA 59
Query 51 ATCTTAT--C-ACTCT-AAAGAATCTTCATCATGGCCTCAGTAACCTCAGCCACCGTCGC 106
||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 ATCTTATCACTACTCTAAAAGAATCTTCATCATGGCCTCAGTAACCTCAGCCACCGTTGC 119
Query 107 AATCCCATCTTTCACCGGTCTTAAAGCCTCAACCATCAAATCCTCTGCCACCGTTAGAAT 166
|||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||||
Sbjct 120 AATCCCATCTTTCACCGGCCTTAAAGCCTCAACCATCAAATCATCCGCCACCGTCAGAAT 179
Query 167 CCAGACTGCTGCTGTTGCATCACCGAAGCTCACAGTGAAGTCATCTCTAAAGAACTTCGG 226
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 CCAAACTGCTGCTGTTGCATCACCGAAGCTTACAGTGAAGTCATCTCTAAAGAACTTCGG 239
Query 227 AGTCGCGGCCGTAGCGGCTGCAGCTTCAATTGCTTTGGCCGGAAACGCCATGGCAATAGA 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTCGCGGCCGTAGCGGCTGCAGCTTCAATTGCTTTGGCCGGAAACGCCATGGCAATAGA 299
Query 287 GGTTCTATTGGGAGGAGGAGATGGTTCGTTAGCTTTTGTTCCCAACGACTTCTCTGTAGC 346
||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||
Sbjct 300 AGTTCTCTTGGGAGGAGGGGATGGGTCGTTAGCTTTTATTCCCAACGACTTCTCTATAGC 359
Query 347 GAAAGGAGAGAAGATTGTGTTCAAGAACAATGCTGGATTCCCACACAATGTTGTCTTCGA 406
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 360 TAAAGGAGAGAAGATTGTGTTCAAGAACAACGCTGGATACCCACACAATGTTGTCTTCGA 419
Query 407 TGAAGACGAGATCCCAAGTGGCGTCGATGTGGCCAAGATCTCGATGGACGAGCAAGATCT 466
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 TGAAGACGAGATCCCAAGTGGCGTCGACGTGGCCAAGATCTCGATGGACGAGCAAGATCT 479
Query 467 ACTCAACGCTGCCGGAGAGACGTACGAGGTTGCTTTGACCGAGCCTGGGACTTACAGCTT 526
|||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 ACTCAACGGTGCGGGAGAGACGTACGAGGTTGCTTTGACCGAGCCAGGGACTTACAGCTT 539
Query 527 CTACTGTGCGCCGCATCAGGGTGCTGGTATGGTCGGTAAAGTCACCGTTAACTAAAATGT 586
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CTACTGTGCGCCACATCAGGGTGCTGGTATGGTCGGTAAAGTCACCGTTAACTAAAATGT 599
Query 587 GTTTGTGAGTAAGTGAGAGAGTCTCGGACTCAAGTAGAGGCTCTTCTTTCACATTCTTAC 646
|| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 600 GTGTGTGAGTAAGTGAGGGAGTCTCGGACTCAATTAGAGGCTCTTCTTTCACATTCTTAC 659
Query 647 ATTATTACATAAAGTGTTTTGTAATTCTAAAGAGTGTTGAATCGAATGGACCGTGATTGT 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATTATTACATAAAGTGTTTTGTAATTCTAAAGAGTGTTGAATCGAATGGACCGTGATTGT 719
Query 707 TGTA--A-TGTGACTGGTTCCATAAATGATTTT-CTTGGTTTATAAATTATATGTAGT-T 761
||| | |||||||||||||||||||| |||| ||||||||||| | || ||||| |
Sbjct 720 TGTTGTACTGTGACTGGTTCCATAAATGGTTTTTCTTGGTTTATA--T-AT--GTAGTCT 774
Query 762 TCGTGTCTCACCCTAAAGTTCTGATTAATC-AAGTAGAAAAGACAAATGTTTGAATAAGC 820
| |||||| |||| ||||| |||||||| |||||| |||| || |||||||||||||
Sbjct 775 TA-TGTCTCGCCCTGAAGTTATGATTAATTTAAGTAGGAAAGTGAACTGTTTGAATAAGC 833
Query 821 GCTTCGCATAGGGGTAATTAGTTTGAT 847
|||| ||||| |||| |||||| |||
Sbjct 834 GCTTTTCATAGAGGTATTTAGTTAGAT 860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5