BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472273 Length=1304 Score E Sequences producing significant alignments: (Bits) Value AT1G20450.1 | Symbols: LTI29, LTI45, ERD10 | Dehydrin family pr... 1271 0.0 AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated 47... 322 6e-87 > AT1G20450.1 | Symbols: LTI29, LTI45, ERD10 | Dehydrin family protein | chr1:7088003-7089606 REVERSE LENGTH=1514 Length=1514 Score = 1271 bits (688), Expect = 0.0 Identities = 1040/1196 (87%), Gaps = 80/1196 (7%) Strand=Plus/Plus Query 153 TAAGAAATAGTATACGTCCTTTGCCATATTTTaaaaaaaaaaTAATTAAAATCTTTAACA 212 |||||||||||| ||||||||||||||| ||| |||||| ||| | |||||||||||| Sbjct 264 TAAGAAATAGTAAACGTCCTTTGCCATAATTT---AAAAAACTAA-TGAAATCTTTAACA 319 Query 213 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTTCTT--CGCACTATAAAACCCCACTCAT 270 |||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||| Sbjct 320 GCGTGTGACCTCCGCGTTGGCCTGGACCCTCTACTTCACACACTATAAAGTCCCACTCAT 379 Query 271 CACAATAATATTCATCACACAGCTCTTGAAAACCATCATAAAGAAACTTACAGCTCAAAT 330 ||||| ||||||||||||||||||||||||||||||| ||||| |||| | ||||||||| Sbjct 380 CACAACAATATTCATCACACAGCTCTTGAAAACCATCTTAAAGCAACTCAAAGCTCAAAT 439 Query 331 CGAAATTTTGAATA-TTTCTCTTTATCATTCTCGTTAAGCGTTAATTAAACCGATTCAAG 389 ||||| ||| || |||||||||||||||| || ||| | | || || ||| ||||| Sbjct 440 CGAAA-TTT--CTAGTTTCTCTTTATCATTCACGCTAA--G-T-GTTCAATCGAATCAAG 492 Query 390 ATTAACTATGGCAGAAGAGTACAAGAACAACGTTCC--AG-AGGA-A----TCA---T-C 437 ||||| ||||||||||||||||||||||| |||||| || |||| | | | | | Sbjct 493 ATTAAGTATGGCAGAAGAGTACAAGAACACCGTTCCAGAGCAGGAGACCCCTAAGGTTGC 552 Query 438 AAC--------CA-CGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTTGAAGAA 488 ||| || || |||| ||| ||||||| |||||||||||||||||||||||||| Sbjct 553 AACAGAGGAATCATCGGCGCCAGAGATTAAGGAGCGGGGAATGTTCGATTTCTTGAAGAA 612 Query 489 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAGCACAAGAC 548 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 613 AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTTGAGCACAAGAC 672 Query 549 TCAGATCTCTGAACCAGAGCCGTTTGTGGCCAAGCACGAAGAAGAGGAACTGAAGGAACA 608 ||||||||||||||||||| ||||||||||||||||| | | | ||| | ||||||| Sbjct 673 TCAGATCTCTGAACCAGAGTCGTTTGTGGCCAAGCAC---G-A-A-GAA--G-AGGAACA 723 Query 609 AAAGCCTACTCTCCTTGAGAAGCTTCACCAGAAACACGAGGAGGAAGAAGAAAACAAG-C 667 ||||||||||| || ||| ||||||||||||| |||||||||||||||||||||||| | Sbjct 724 TAAGCCTACTCTTCTCGAGCAGCTTCACCAGAAGCACGAGGAGGAAGAAGAAAACAAGCC 783 Query 668 ATGGTCTCCTCGACAAACTCCACCGTTCCAACAGCTCTTCTT-C-C-TC---TG-T--ag 718 | |||||||||||||||||||||| |||||||||||||||| | | || || | || Sbjct 784 A-AGTCTCCTCGACAAACTCCACCGATCCAACAGCTCTTCTTCCTCTTCGAGTGATGAAG 842 Query 719 aaggtgaagacggtgagaagagaaagaagaagaaggaaaagaaaaagatcgttgaaggag 778 ||||||||||||||||| | || ||||||||| || ||||||| ||||| |||||||||| Sbjct 843 AAGGTGAAGACGGTGAG-A-AG-AAGAAGAAGGAGAAAAAGAAGAAGATTGTTGAAGGAG 899 Query 779 ---atgtgaaaacagaggaagaggagaaCCAAGGAGTAATGGACAAGATCAAGGAGAAGT 835 |||||||||||| |||||| ||||| |||||||||||||||| ||| |||||||||| Sbjct 900 ATCATGTGAAAACAGTGGAAGAAGAGAATCAAGGAGTAATGGACAGGATTAAGGAGAAGT 959 Query 836 TTCCA-TACGGCGAGAAACCAGAGGGTCATGATGTACCAGAGGTCACCACCATGCCAGCA 894 ||||| | ||| |||||||||| |||| |||||||||||| |||||||||||||||||| Sbjct 960 TTCCACT-CGGAGAGAAACCAGGGGGTGATGATGTACCAGTCGTCACCACCATGCCAGCA 1018 Query 895 CCACATTCGGTAGAGGATAAAAAACCAGAGGAAGAAGAGAAGAAAGGATTAATGGATAAG 954 |||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||| Sbjct 1019 CCACATTCGGTAGAGGATCACAAACCAGAGGAAGAAGAGAAGAAAGGGTTTATGGATAAG 1078 Query 955 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAGGTGGTCAACAGC 1014 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | Sbjct 1079 ATCAAGGAGAAGCTTCCAGGCCACAGCAAGAAACCAGAGGATTCACAAGTCGTCAACACC 1138 Query 1015 GCACCGCTGGTTGAAACAGCAACACCGATCGCGGAGCATCC-GGAGGAGAAGAAGGGGTT 1073 |||||||||||||||||||||||||||| || || ||||| ||||||||||||||| || Sbjct 1139 ACACCGCTGGTTGAAACAGCAACACCGATTGCTGA-CATCCCGGAGGAGAAGAAGGGATT 1197 Query 1074 TATGGATAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACTAGTGgagaggaaga 1133 |||||| ||||||||||||||||||||||||||||| |||||||| | |||||||||||| Sbjct 1198 TATGGACAAGATCAAAGAGAAGCTTCCAGGTTATCACGCCAAGACCACTGGAGAGGAAGA 1257 Query 1134 gaagaaagataaagagtctctg-t-aagagaaaaagatga-aagaatgaataataatgat 1190 ||||||||| ||| ||| |||| | |||||||||| |||| |||| |||||||||||||| Sbjct 1258 GAAGAAAGA-AAA-AGTGTCTGATTAAGAGAAAAATATGATAAGAGTGAATAATAATGAT 1315 Query 1191 gTGGGAGTGGAACATT-TGTTGTGttttttttttttAATGTTGATCATTATCTCtttttt 1249 |||||||||| || || |||||| ||||| |||||| |||||||||| |||||||| | Sbjct 1316 GTGGGAGTGGGAC-TTATGTTGT-TTTTTGTTTTTT---GTTGATCATTGTCTCTTTTAT 1370 Query 1250 tttGTATTT-TAAGCTGTGTTATCCAAGTTTGTGTTTAGTGTTAGACCATTTGTGT 1304 ||||| ||| || ||||| | ||||||||||||||||| |||||| ||||||||| Sbjct 1371 TTTGTCTTTCTA-GCTGT-TC-TCCAAGTTTGTGTTTAGAGTTAGATCATTTGTGT 1423 Score = 167 bits (90), Expect = 3e-40 Identities = 135/155 (87%), Gaps = 10/155 (6%) Strand=Plus/Plus Query 1 ACCAAACTTCTATACATTTCCCGTGAAATAAAAGTACATGACTATGCAAATATCTAATTA 60 |||||||||| |||| | ||||||||| ||||||||||| ||||||||||||||||| || Sbjct 79 ACCAAACTTCCATACGTCTCCCGTGAACTAAAAGTACATTACTATGCAAATATCTAA-TA 137 Query 61 GTATTAGTTAAATCTTTAATCTGTATATTAAAAACATAAATCCTTAAATTAAGAAAAAGA 120 || |||||| ||| | ||| ||||||||||||||||||||||||||||||||||| | Sbjct 138 -TA--AGTTAACTCTAT-ATCAATATATTAAAAACATAAATCCTTAAATTAAGAAAAA-A 192 Query 121 -A-GGTGGTGATTTCAT-GATATTTATCCACCGAC 152 | || ||||||||||| |||||| |||||||||| Sbjct 193 TATGG-GGTGATTTCATTGATATTCATCCACCGAC 226 > AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated 47 | chr1:7084409-7085772 REVERSE LENGTH=1219 Length=1219 Score = 322 bits (174), Expect = 6e-87 Identities = 642/849 (76%), Gaps = 107/849 (13%) Strand=Plus/Plus Query 425 CAGAGGAATCATCAACCACGACGCCGGAGGTTAAGGAACGGGGAATGTTCGATTTCTT-- 482 ||||||||||| || | ||||| | ||||||| ||| || ||| |||| |||||||| Sbjct 164 CAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATTGTTTGATTTCTTGG 223 Query 483 -GAAGAA-AAAGGAGGAAGTTAAACCTCAAGAAACGACGACTCTCGCGTCTGAGTTCGAG 540 |||||| || |||||||| ||||||||||| || ||||| |||| |||||||||||| Sbjct 224 GGAAGAAGGAA-GAGGAAGTGAAACCTCAAGAGACAACGACGCTCGAGTCTGAGTTCGAT 282 Query 541 CACAAGACTCAGATCTCTGAACCAGAGCCGTTTG-TGGCCAAGCACGAAGAAGAGGAACT 599 || ||| |||||||||||||||| | | ||| | | || ||||||| |||| ||| Sbjct 283 CATAAGGCTCAGATCTCTGAACC-G-G-AGTTAGCT-GCGGAGCACGAGGAAG-TGAA-- 335 Query 600 GAAGGAACAAAAGCCTACTCTCCTTGAGAAGCTTCACCAG-AAACA-CGAGGAGGAAGAA 657 | | |||| ||| |||||| || ||| ||||||| || ||| | |||||| || || Sbjct 336 GGA-GAAC--AAGATTACTCTGCTAGAGGAGCTTCA--AGAAAAGACCGAGGAAGATGAG 390 Query 658 GAAAACAAGCATGGTCTCCTCGACAAA-CTCCACCGTTCCAACAGCTCTTCTTCCTCTGT 716 || ||||||| | || || |||| ||| || ||||| ||||||||||||||||||||| | Sbjct 391 GAGAACAAGCCTAGTGTCATCGA-AAAGCTTCACCGATCCAACAGCTCTTCTTCCTCT-T 448 Query 717 agaag-g-tgaagacggtgagaagagaaagaagaagaaggaaaagaaaaagatcgttgaa 774 | || | |||||| |||||| || ||||||| |||| | ||||| |||||||||||| Sbjct 449 CG-AGCGATGAAGAAGGTGAG--GA-AAAGAAGGAGAA-G--AAGAAGAAGATCGTTGAA 501 Query 775 ggagatgtgaaaacagaggaagaggagaaCCAAGGAGTAATGGACAAGATCAAGGAGAAG 834 ||||| | | | | | | | || | ||||| || |||| ||||||||||||||| Sbjct 502 GGAGA-G-G-----A-A-G-ATA--AG-A--AAGGACTAGTGGAGAAGATCAAGGAGAAG 546 Query 835 TTTCC---ATACGGCGAGAA-ACCAG-AG-GGTCATGATGTACCAGAGGT-CACCACCAT 887 | || | || ||| || | ||| || || |||||||||||| | ||| ||||| Sbjct 547 CTCCCAGGACACCACGACAAGA-CAGCAGAGG--ATGATGTACCAG-TTTCCACTACCAT 602 Query 888 GCCAGCACCACAT-TCGGTAGA--G-GAT--A-AAAAACCA-GAGGAAGAAGAGAAGAAA 939 || | |||| | |||| ||| | | | | | |||| || |||||||||||| Sbjct 603 CCCGGTACCA-GTGTCGG-AGAGTGTGGTGGAGCATGACCATCCCGAGGAAGAGAAGAAA 660 Query 940 GGATTAATGGATAAGATCAAGGAGAAGCTTCCAGGCCA-CA-G-CAAGAAACCAGAGGAT 996 |||||| | || |||||||||||||||||||| || || || | | ||||| |||||||| Sbjct 661 GGATTAGTTGAGAAGATCAAGGAGAAGCTTCCTGGTCACCACGACGAGAAAGCAGAGGAT 720 Query 997 TCA-CAGGTGGTCAACAG--CGCACCGCTGGTTGAAAC--AGCA--------A--C-AC- 1039 ||| ||| | ||| || | | | ||| |||||| ||| |||| | | || Sbjct 721 TCACCAGCT-GTC-AC-GTCCACGCCGTTGGTTGTAACGGAGCATCCGGTGGAGCCTACG 777 Query 1040 -C-GA---T-C-GCGGAGCATCCGGAGGAGAAGAAGGGG-TTTATGGATAAGATCAAAGA 1091 | || | | | ||| ||||||||||||||||||||| ||| |||| ||||||||||| Sbjct 778 ACGGAGCTTCCAGTGGAACATCCGGAGGAGAAGAAGGGGATTT-TGGAAAAGATCAAAGA 836 Query 1092 GAAGCTTCCAGGTTATCATGCCAAGACTAGTGgagaggaagagaagaaagataaagagtc 1151 ||||||||||||||||||||||||||| | || |||||||| ||||||||| |||||||| Sbjct 837 GAAGCTTCCAGGTTATCATGCCAAGACCACTGAAGAGGAAGTGAAGAAAGAAAAAGAGTC 896 Query 1152 tc-tg-taagagaaaaa-gatgaaagaatgaataataatgatgTGGGAGTGGAACATTTG 1208 | || | | || |||| | | |||||||||||||| ||||||||||||| ||||| | Sbjct 897 TGATGATTA-AGCAAAATGGTTAAAGAATGAATAAT---GATGTGGGAGTGGGACATTCG 952 Query 1209 TTGTGtttt 1217 |||||||| Sbjct 953 CTGTGTTTT 961 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64156296510 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5