BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg472278 Length=1824 Score E Sequences producing significant alignments: (Bits) Value AT1G20510.1 | Symbols: OPCL1 | OPC-8:0 CoA ligase1 | chr1:71034... 2811 0.0 > AT1G20510.1 | Symbols: OPCL1 | OPC-8:0 CoA ligase1 | chr1:7103454-7105881 REVERSE LENGTH=1857 Length=1857 Score = 2811 bits (1522), Expect = 0.0 Identities = 1642/1702 (96%), Gaps = 0/1702 (0%) Strand=Plus/Plus Query 1 GTCAAGTTACATAGAAACAAAATCCATGGCTTCAGTGAATTCTCGAAGTGGTTTCTGCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCAAGTTACATAGAAACAAAATCCATGGCTTCAGTGAATTCTCGAAGTGGTTTCTGCAA 60 Query 61 CTCAAACTCAACATTCTACAGCAAACGAACACCAATCCCACTCCCGCCAAATCCATCACT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTCAAACTCAACATTCTACAGCAAACGAACACCAATCCCACTCCCGCCAAATCCATCACT 120 Query 121 CGACGTCACTACTTTCATATCTTCACAAGCTCATCGCGGACGTATCGCCTTCATCGACGC 180 |||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| Sbjct 121 CGACGTCACTACTTTCATTTCTTCACAAGCTCATCGTGGCCGTATCGCCTTCATCGACGC 180 Query 181 TTCCACTGGTCAAAACCTCACCTTCTCCGAGCTATGGCGTGCCGTGGAATCCGTCGCCGA 240 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 181 TTCCACAGGTCAAAACCTCACCTTCACCGAGCTATGGCGTGCCGTGGAATCCGTCGCCGA 240 Query 241 TTGCCTCTCCAACATGGGGATTCGCAAAGGCCACGTCGTCCTCCTCCTCTCTCCAAACTC 300 ||| |||||| | || ||||||||||||||||||||||||||||||||||| |||||||| Sbjct 241 TTGTCTCTCCGAGATAGGGATTCGCAAAGGCCACGTCGTCCTCCTCCTCTCCCCAAACTC 300 Query 301 AATTTTATTCCCCGTCGTTTGTCTCTCCGTCATGTCACTAGGCGCAATCATCACCACCAC 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AATTTTATTCCCCGTCGTTTGTCTCTCCGTCATGTCACTAGGCGCAATCATCACCACCAC 360 Query 361 GAATCCTCTCAACACTTCAAACGAAATCGCTAAACAGATTAAGGACTCAAATCCAGTCCT 420 |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct 361 GAATCCACTCAACACTTCAAACGAGATCGCTAAACAGATTAAGGATTCAAATCCAGTCCT 420 Query 421 CGCCTTCACCACGTCGCAGCTCCTCCCGAAAATCGCCGCCGCAGCAAAGAAGCTCCCGAT 480 |||||||||||| |||||||| |||||||||||| ||||||| ||||||||||||||||| Sbjct 421 CGCCTTCACCACATCGCAGCTTCTCCCGAAAATCTCCGCCGCCGCAAAGAAGCTCCCGAT 480 Query 481 CGTTCTCATGGACGAGGAACGAGTTGACTCAGTGGGTAAAGTAAGAAGATTAATGGAGAT 540 ||| || |||||||||||||||||||||||||||||| | || |||||||| ||||||| Sbjct 481 CGTGCTTATGGACGAGGAACGAGTTGACTCAGTGGGTGATGTGAGAAGATTGGTGGAGAT 540 Query 541 GATGAAGAAGGAACCGAGTGGGAACCGAGTCATGGAGCGAGTTGACCAGGATGATACAGC 600 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || Sbjct 541 GATGAAGAAGGAACCGAGTGGGAACCGAGTCAAGGAGCGAGTTGACCAGGATGATACGGC 600 Query 601 GACTTTGCTTTACTCGTCAGGAACCACCGGAATGAGCAAAGGAGTGATCTCGTCTCACCG 660 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 601 GACTTTGCTTTACTCTTCAGGAACCACGGGAATGAGCAAAGGAGTGATCTCGTCTCACCG 660 Query 661 TAACTTAATCGCGATGGTTCAAACCATCGTGAATCGATTTGGATCTGACGATGGAGAGCA 720 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 661 TAACTTAATCGCGATGGTTCAAACCATCGTGAATCGATTTGGATCTGATGATGGAGAGCA 720 Query 721 ACGATTCATCTGCACCGTTCCTATGTTTCATATCTACGGTTTAGCTGCGTTCGCCACTGG 780 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 721 ACGATTCATCTGCACTGTTCCTATGTTTCACATCTACGGTTTAGCTGCGTTCGCTACTGG 780 Query 781 ATTACTCGCTTACGGATCTACGATCATCGTTCTCTCTAAATTCGAGATGCACGAGATGAT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 ATTACTCGCTTACGGATCTACGATCATCGTTCTCTCTAAATTCGAGATGCACGAGATGAT 840 Query 841 GTCGGCGATTGGTAAGTATCAAGCCACGTGTTTGCCTCTCGTGCCTCCGATTCTTGTGGC 900 ||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 841 GTCAGCGATTGGCAAGTATCAAGCCACGTCTTTGCCTCTCGTGCCTCCGATTCTTGTGGC 900 Query 901 GATGGTCAACGGCGCTGATCAGATTAAGGCTAAGTATGATTTGAGCTCTCTGCATACGGT 960 |||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||| || Sbjct 901 GATGGTTAACGGTGCAGATCAGATTAAGGCTAAGTATGATTTGAGCTCTATGCATACTGT 960 Query 961 TTTATGCGGCGGAGCTCCGTTGAGTAAGGAAGTGACTGAAGGATTCGCGGAGAAGTATCC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 TTTATGCGGCGGAGCTCCGTTGAGTAAGGAAGTGACTGAAGGATTCGCGGAGAAGTATCC 1020 Query 1021 GACGGTTAAGATTTTGCAAGGCTATGGGTTGACTGAGTCAACGGGTATAGGAGCTTCAAC 1080 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 1021 GACGGTTAAGATTTTACAAGGTTATGGGTTGACTGAGTCAACGGGTATAGGAGCTTCTAC 1080 Query 1081 GGATACTGTAGAGGAAAGTCGGAGATACGGTACCGCCGGGAAATTGTCGGCAAGTATGGA 1140 ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1081 GGATACTGTTGAGGAAAGTCGGAGATACGGTACCGCTGGGAAATTGTCGGCAAGTATGGA 1140 Query 1141 AGGGAGGATTGTGGATCCGGTTACTGGTCAGATTCTTGGACCGAACCAAACCGGTGAGCT 1200 |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1141 AGGGAGGATTGTTGATCCGGTTACTGGTCAGATTCTTGGACCGAAACAAACCGGTGAGCT 1200 Query 1201 TTGGCTCAAGGGTCCTTCCATAATGAAAGGTTATTTCAGCAATGAGGAAGCTACGAGCTC 1260 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1201 TTGGCTCAAGGGTCCTTCCATAATGAAAGGTTATTTCAGCAATGAGGAAGCTACGAGTTC 1260 Query 1261 GACTCTTGATTCTGAAGGATGGTTAAGAACTGGAGATCTTTGCTATATCGATGAAGATGG 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 GACTCTTGATTCTGAAGGATGGTTAAGAACTGGAGATCTTTGCTATATCGATGAAGATGG 1320 Query 1321 ATTCATATTCGTTGTTGATCGGTTAAAGGAACTGATCAAGTACAAGGGTTACCAGGTTGC 1380 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1321 ATTCATATTCGTGGTTGATCGGTTAAAGGAACTGATCAAGTACAAGGGTTATCAGGTTGC 1380 Query 1381 TCCAGCTGAGCTAGAGGCTTTGTTGCTTACTCATCCTGAAATCACTGATGCCGCAGTGAT 1440 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1381 TCCAGCTGAGCTAGAGGCTTTGTTGCTTACTCATCCTGAAATCACTGATGCTGCAGTGAT 1440 Query 1441 CCCGTTTCCGGACAAAGAAGTGGGGCAATTTCCAATGGCATACGTCGTAAGGAAAACTGG 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 CCCGTTTCCGGACAAAGAAGTGGGGCAATTTCCAATGGCATACGTCGTAAGGAAAACTGG 1500 Query 1501 GAGCAGCTTATCAGAGAAGTCGATAATGGAGTTTGTAGCGAAACAAGTAGCACCATACAA 1560 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1501 GAGCAGCTTATCAGAGAAGACAATAATGGAGTTTGTAGCGAAACAAGTAGCACCATACAA 1560 Query 1561 GAGAATACGAAAAGTTGCTTTCGTATCTTCCATACCAAAGAACCCTTCAGGCAAGATACT 1620 ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 1561 GAGGATACGAAAAGTTGCTTTCGTATCTTCAATACCAAAGAACCCTTCAGGCAAGATTCT 1620 Query 1621 ACGCAAGGATCTCATCAAGCTAGCAACTTCCAACTCCAAGCTTTGAAATTGTTATGAGAG 1680 |||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1621 ACGCAAAGATCTCATCAAGATAGCAACTTCCAACTCCAAGCTTTGAAATTATTATGAGAG 1680 Query 1681 CCAATCTCCATGTATTATTTAT 1702 ||||||||||||||||||||| Sbjct 1681 TCAATCTCCATGTATTATTTAT 1702 Score = 154 bits (83), Expect = 3e-36 Identities = 112/125 (90%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 1700 TATGCATCCATGTTGAAGTATAACCATGTGGTCTCAAAACACAGAAGATTACACATAAAT 1759 ||||||||||||||||| ||| ||||||||||| |||||||||||||||||||| | || Sbjct 1738 TATGCATCCATGTTGAAATATGACCATGTGGTCCCAAAACACAGAAGATTACAC--ACAT 1795 Query 1760 AATGTGGAGACCAGTATATGGTTTATGTAATAGAGTATATGTTCAAAACATGTTTATGAT 1819 || | | | ||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1796 AA-AT-G-G-CCACTATATGGTTTATGTAATAGAGTATATGTTCAAAACATGTTTCTGAT 1851 Query 1820 CAAAT 1824 ||||| Sbjct 1852 CAAAT 1856 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 90260579910 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5