BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472299
Length=1715
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20650.1 | Symbols: | Protein kinase superfamily protein | ... 2455 0.0
> AT1G20650.1 | Symbols: | Protein kinase superfamily protein
| chr1:7158244-7160526 REVERSE LENGTH=1828
Length=1828
Score = 2455 bits (1329), Expect = 0.0
Identities = 1619/1748 (93%), Gaps = 64/1748 (4%)
Strand=Plus/Plus
Query 18 TACTGTTTAAACCttttttttttttttttttttttttGATCCTTGTCATTTTTTGTCGTG 77
|||||||||||||| ||||||| || || || | |||||||||||||||||||||||
Sbjct 80 TACTGTTTAAACCTCAGTTTTTTTGTTGTTGTTATAAGATCCTTGTCATTTTTTGTCGTG 139
Query 78 ATTAGATGGAATTTGTATAATTTTAGTAACTCTTCA----tttttt-ttttAACAATA-A 131
|||||||| ||||||||||||||||||||||||||| |||||| |||||| |||| |
Sbjct 140 ATTAGATGTAATTTGTATAATTTTAGTAACTCTTCAGTTTTTTTTTGTTTTAAAAATATA 199
Query 132 TTTT-TCTCTCTCTGTCTTCCTGCAATCTATCG-C-G--GATTCAATAA-TTCGCTTTAC 185
|||| |||||||||||||||||||||||||||| | | |||||||||| ||||||||||
Sbjct 200 TTTTCTCTCTCTCTGTCTTCCTGCAATCTATCGCCGGCCGATTCAATAATTTCGCTTTAC 259
Query 186 TCTGCCAAAAAAGTTTGTTCTTTTGTTTTCTGGGATTATCCAAGGAGAAGAAACAGA-GA 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 260 TCTGCCAAAAAAGTTTGTTCTTTTGTTTTCTGGGATTATCCAAAGAGAAGAAACAGAGGA 319
Query 245 AATCAATCTCTTTCTTAGTTTCAGACCCAAAATCC-------T--AG----G-TT-TTTA 289
||||||||||||| |||||||||||||| |||||| | || | || ||||
Sbjct 320 AATCAATCTCTTTTTTAGTTTCAGACCCTAAATCCTAGGTTTTGAAGTTTTGTTTCTTTA 379
Query 290 GTAATTTTGTCAGGTTTTGTGTCTGGTGTTGGGA-TTTTCGGAGCTTGGTTTTCTCAAAA 348
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 380 GTAATTTTGTCAGGTTTTGTGTCTGGTGTTGGGATTTTTCGGAGCTTGG-TTTCT--TGA 436
Query 349 ACCAGCTCCATTTTCT----A----------AAA---CCATTGTTGTAA-TCCTGAAG-A 389
|||||||||||||||| | ||| |||||||||||| || | ||| |
Sbjct 437 ACCAGCTCCATTTTCTAAAAATTCCTTCTTTAAATCCCCATTGTTGTAAGTCTTAAAGAA 496
Query 390 AAAAGAAGATGACTTGTTGTTTCTCTTGTTTGAATCCTCGAACCAAGGACATAAGAGTCG 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 AAAAGAAGATGACTTGTTGTTTCTCTTGTTTGAATCCTCGAACCAAGGACATAAGAGTCG 556
Query 450 ACATTGATAACGCTCGATGCAACTCTCGTTACCAAACCGATTCGTCAGTTCATGGAAGTG 509
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 557 ACATTGATAACGCTCGATGCAACTCTCGTTACCAAACCGATTCATCAGTTCATGGAAGTG 616
Query 510 ATACAACAGGAACAGAGTCGATTTCGGGTATTTTAGTAAACGGTAAAGTGAATAGTCCGA 569
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 617 ATACAACAGGAACAGAGTCGATTTCGGGTATCTTAGTAAATGGTAAAGTGAATAGTCCGA 676
Query 570 TACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTACAAGAAATT 629
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 677 TACCTGGTGGTGGAGCTCGGAGCTTCACGTTCAAGGAGTTAGCTGCAGCTACAAGAAACT 736
Query 630 TCCGGGAAGTGAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTTAG 689
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TCCGGGAAGTTAATTTGCTCGGAGAAGGAGGTTTTGGCAGAGTTTATAAGGGACGTTTAG 796
Query 690 ATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGTCTTCAAGGCAACCGAG 749
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 797 ATTCAGGACAAGTAGTGGCTATTAAGCAATTGAATCCAGATGGGCTTCAAGGGAACCGAG 856
Query 750 AATTTATAGTAGAAGTTCTTATGCTTAGCTTATTGCATCATCCGAATCTTGTTACATTGA 809
| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 857 AGTTTATAGTAGAAGTTCTTATGCTTAGCTTATTGCATCATCCCAATCTCGTTACATTGA 916
Query 810 TTGGTTACTGTACTTCTGGTGATCAGAGACTTCTTGTCTATGAATACATGCCAATGGGAA 869
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 917 TCGGTTACTGTACTTCTGGTGATCAAAGACTTCTTGTCTATGAATACATGCCAATGGGAA 976
Query 870 GCTTAGAAGATCACCTTTTTGATCTCGAGTCCAATCAAGAACCATTAAGTTGGAATACTC 929
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 977 GCTTAGAAGATCACCTTTTTGATCTTGAGTCTAATCAAGAACCATTAAGCTGGAATACTC 1036
Query 930 GAATGAAAATCGCGGTTGGTGCAGCTCGCGGAATAGAGTATCTTCACTGCACAGCTAACC 989
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1037 GAATGAAAATCGCGGTTGGTGCAGCTCGAGGAATAGAGTATCTTCACTGCACAGCTAACC 1096
Query 990 CGCCAGTGATTTACCGCGACTTGAAATCTGCAAACATATTGTTAGACAAAGAGTTCAGCC 1049
|||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1097 CGCCAGTGATTTACCGTGATTTGAAATCCGCAAACATATTGTTAGATAAAGAGTTCAGTC 1156
Query 1050 CAAAACTCTCGGATTTCGGATTGGCGAAACTCGGTCCAGTAGGTGATCGAACTCATGTAT 1109
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1157 CAAAACTCTCGGATTTCGGATTGGCGAAACTCGGTCCAGTTGGTGATCGAACTCATGTAT 1216
Query 1110 CGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCCGAATACGCAATGAGCGGGAAGT 1169
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1217 CGACTCGTGTCATGGGAACTTACGGTTACTGTGCTCCTGAATACGCAATGAGCGGGAAAT 1276
Query 1170 TAACTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATTACTGGGA 1229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TAACTGTTAAATCGGATATCTACTGCTTCGGTGTAGTGTTGCTTGAGCTGATTACTGGGA 1336
Query 1230 GAAAAGCTATTGATTTGAG-TCAAAAGCAAGGCGAGCAGAATCTTGTTACTTGGTCACGT 1288
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 GAAAAGCTATTGATTT-AGGTCAAAAGCAAGGCGAGCAGAATCTTGTTACTTGGTCACGT 1395
Query 1289 CCATACCTCAAGGATCAGAAGAAGTTTGGACATTTAGTGGATCCGTCTCTTCGAGGAAAA 1348
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1396 CCATACCTCAAGGATCAGAAGAAGTTTGGACATTTAGTGGATCCGTCTCTACGAGGAAAA 1455
Query 1349 TACCCAAGACGGTGTTTAAACTATGCGATTGCGATAATCGCAATGTGTCTTAACGAAGAA 1408
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 1456 TACCCAAGACGGTGTTTAAACTATGCGATTGCGATTATTGCAATGTGTCTTAATGAAGAA 1515
Query 1409 GCTCATTATCGACCATTCATAGGTGACATAGTTGTGGCACTTGAGTACTTAGCCGCACAG 1468
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1516 GCTCATTATCGACCGTTCATAGGTGACATAGTTGTGGCACTAGAGTACTTAGCCGCACAG 1575
Query 1469 AGCCGATCTCATGAAGCTCGAAACGTCTCATCCCCGTCACCAGAGGTTACAAGAACGCCG 1528
||| |||||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct 1576 AGCAGATCTCATGAAGCTCGAAACGTCTCATCACCGTCACCAGAGATTTCAAGAACGCCG 1635
Query 1529 CGACGAGACTTGTAAAACACACAAACAGTCTTGAGCTTTTGTTAAGAATTTCAGTTTGAT 1588
||||||||||||||||| || |||| | | ||||||| ||||||||||||||| |
Sbjct 1636 CGACGAGACTTGTAAAA-ACTCAAAAA--C---AGCTTTT---AAGAATTTCAGTTTGGT 1686
Query 1589 GTTATGTAAAAATGtttttttttttttttttC-CTGGAAAACAATATATATTTGGTAAAT 1647
||| |||||||||| |||||||| ||| |||| | | |||||||||||| ||||||||||
Sbjct 1687 GTTGTGTAAAAATGGTTTTTTTTGTTTCTTTCTCAG-AAAACAATATATGTTTGGTAAAT 1745
Query 1648 GTTTTGTTTTTAGTTTCTTTTACTTGATGTATATGACAATTATGGAAACAATTAAAGTTC 1707
|||| ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1746 GTTTCGTTATTAGTCTCTTTTACTTGATGTATATGGCAATTATGGAAACAATTAAAGTTC 1805
Query 1708 TTTTATAT 1715
||||||||
Sbjct 1806 TTTTATAT 1813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84788720505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5