BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472301
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mo... 1232 0.0
AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | high mobility group... 468 4e-131
> AT1G20693.1 | Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high
mobility group B2 | chr1:7176775-7178820 FORWARD LENGTH=954
Length=954
Score = 1232 bits (667), Expect = 0.0
Identities = 806/867 (93%), Gaps = 34/867 (4%)
Strand=Plus/Plus
Query 1 TTTCGTGCGAAATTTCAA-TTTTTT-CAATATCCTTTATTGATTGACCAAAGATATTTTA 58
|||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||
Sbjct 5 TTTCGTGCGAAATTTCAATTTTTTTGCAATATCCTTTATTGATTGACCGAAGATATTTTA 64
Query 59 CAAGCCTTTCTCCACTAAGCCCTTCTCTCTTC-TCTCTTGGCTTCTCACTTGAATCTCCC 117
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 65 CAAGCCTTTCTCCACTAAGCCCTTCTCTCTTCTTCTCTTGGCCTCTCACTTGAATCTCCC 124
Query 118 TCAAATTGATCAATCACAAATTCcttcttcttctctctctctcttctcGATCCCTACGAA 177
|||| ||||||||||||||||||||||| ||||||||||| || ||| |||||| |||
Sbjct 125 ACAAAGCGATCAATCACAAATTCCTTCTTC-TCTCTCTCTCT-TT-TCG-TCCCTAAGAA 180
Query 178 TCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGACC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTGACC 240
Query 238 AAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCAGCTGCTAAGGATCCAAACAAACCA 297
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 241 AAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCTGCTGCTAAGGACCCCAACAAACCA 300
Query 298 AAGAGGCCAGCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAGAAG 357
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGAGGCCAGCCAGTGCTTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAGAAG 360
Query 358 GAAAACCCCAAGAACAAGTCTGTTGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGGAAA 417
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 361 GAAAACCCCAAGAACAAGTCTGTAGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGGAAG 420
Query 418 TCCTTGTCAGATTCTGAGAAAGCTCCTTATGTAGCTAAGGCTGAGAAACGCAAGGTTGAA 477
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 421 TCCTTGTCTGATTCTGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAA 480
Query 478 TATGAGAAGAACATTAAAGCATACAACAAGAAACTGGAGGAAGGTCCAAAGGAAGATGAG 537
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 481 TATGAGAAGAACATTAAAGCTTACAACAAGAAACTGGAGGAAGGTCCAAAAGAAGATGAG 540
Query 538 GAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAGTGAA 600
Query 598 GAGGA------CGATGACTAA-----TG---GT----AGCATTAGTATAGATGGCTGCAA 639
||||| |||||||||| || || |||||||||||||||||||||||
Sbjct 601 GAGGAGGAGGACGATGACTAAGAAGCTGAATGTTGGTAGCATTAGTATAGATGGCTGCAA 660
Query 640 AGATCTCTCTGTTTTTATTTTATTTTACTTGAAATGTTGATGGGGCTGATTAAAA-GGGT 698
| |||||||||||||||| || | |||||||||||| | |||||||||||||| ||||
Sbjct 661 AAATCTCTCTGTTTTTATCTT-T---ACTTGAAATGTTAACGGGGCTGATTAAAATGGGT 716
Query 699 CTTTCTTTT-ATCTTGT-AT-TG-CCACAATCTCCCACTAAAGCCCTTTGGATGGAGAAA 754
||||||||| ||||| | || | |||||||||| |||||||||||| || |||||||||
Sbjct 717 CTTTCTTTTTATCTTTTTATATTTCCACAATCTCTCACTAAAGCCCTCTGAATGGAGAAA 776
Query 755 GTGAATTGTAGAATGTTTAGATGGTGAAAGTGAGACTTGCAGCTCTGTACTCTTTGCTCT 814
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 777 GTGAATTGTAGAATGTTTAGATGGTGAAAGAGAGACTTGCAGCTCTGTACTCTTTGCTTT 836
Query 815 ATAAAACGATTTAGTTTTCTTTTCTCA 841
|||||||||||||||||||||||||||
Sbjct 837 ATAAAACGATTTAGTTTTCTTTTCTCA 863
> AT1G20696.2 | Symbols: HMGB3, NFD3, NFD03 | high mobility group
B3 | chr1:7179453-7181499 FORWARD LENGTH=931
Length=931
Score = 468 bits (253), Expect = 4e-131
Identities = 377/436 (86%), Gaps = 12/436 (3%)
Strand=Plus/Plus
Query 175 GAATCAATTATGAAAGGAGCTAAATCAAAGACTGAAACCAGGAGCTCCAAGCTCTCTGTG 234
||||| || ||||||||||||||||| ||| |||||||||||||| | ||||||||||||
Sbjct 173 GAATCGATCATGAAAGGAGCTAAATCTAAGGCTGAAACCAGGAGCACAAAGCTCTCTGTG 232
Query 235 ACCAAGAAGCCGGCTAAAGGAGCAGGGCGTGGCAAAGCAGCTGCTAAGGATCCAAACAAA 294
|| |||||||| ||| |||| | | || ||||| |||||||| ||||||||||||
Sbjct 233 ACTAAGAAGCCTGCT-AAGG-G-A--GC----CAAAGGTGCTGCTAAAGATCCAAACAAA 283
Query 295 CCAAAGAGGCCAGCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGAGACTTTCAAG 354
|| |||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 284 CCTAAGAGGCCTTCCAGTGCCTTCTTCGTTTTCATGGAAGATTTCCGTGTGACGTACAAG 343
Query 355 AAGGAAAACCCCAAGAACAAGTCTGTTGCTACTGTTGGAAAAGCTGCTGGAGACAAGTGG 414
|||| |||| |||||||||||||||||| ||||||| ||||||| ||| || ||||||
Sbjct 344 GAGGAGCACCCTAAGAACAAGTCTGTTGCTGCTGTTGGCAAAGCTGGTGGTGAAAAGTGG 403
Query 415 AAATCCTTGTCAGATTCTGAGAAAGCTCCTTATGTAGCTAAGGCTGAGAAACGCAAGGTT 474
||||||||||| || |||||||| ||||||||||| ||||||||||| || |||||||||
Sbjct 404 AAATCCTTGTCTGACTCTGAGAAGGCTCCTTATGTGGCTAAGGCTGACAAGCGCAAGGTT 463
Query 475 GAATATGAGAAGAACATTAAAGCATACAACAAGAAACTGGAGGAAG-GTCCAAAGGAAGA 533
|| |||||||||||||| ||||| |||||||||||| ||| || | || ||||||||
Sbjct 464 GAGTATGAGAAGAACATGAAAGCCTACAACAAGAAATTGGT--AATTGCCCTAAGGAAGA 521
Query 534 TGAGGAATCTGACAAGTCAGTGTCAGAGGTCAATGACGAGGATGATGCTGAGGATGGTAG 593
||||||||||||||||||||| |||||||| || || |||||||||||||||||||| ||
Sbjct 522 TGAGGAATCTGACAAGTCAGTTTCAGAGGTTAACGATGAGGATGATGCTGAGGATGGCAG 581
Query 594 TGAAGAGGACGATGAC 609
||||||||| || |||
Sbjct 582 TGAAGAGGAGGAAGAC 597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41041298099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5