BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg472316
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20810.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans i... 1256 0.0
> AT1G20810.1 | Symbols: | FKBP-like peptidyl-prolyl cis-trans
isomerase family protein | chr1:7232006-7233566 FORWARD LENGTH=917
Length=917
Score = 1256 bits (680), Expect = 0.0
Identities = 829/899 (92%), Gaps = 18/899 (2%)
Strand=Plus/Plus
Query 1 CTTCTTCATCAATGGCTTCCATTAGTAGCTTACACAGTTGGGCATCTAATCAACACTCTC 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 9 CTTCTTCATCAATGGCTTCCATTAGTAGCTTACACAGATGGGCATCTAATCAACACTCTC 68
Query 61 GTCTTCCTCG-A--A--TC-ATTTCTGAGGCTGACCAATCTCGACCCATTAAACAATTCG 114
|||||||||| | | || |||||||||||||||||||||||||||||||| ||| |||
Sbjct 69 GTCTTCCTCGAATCACTTCTATTTCTGAGGCTGACCAATCTCGACCCATTAACCAAGTCG 128
Query 115 TTGTCTTTCCGGTTCCCATATCAAGAAGAGACGCGAGTATCATCCTTCTCGGCTCGCTTC 174
| | |||| ||||||| ||||| ||||||||||||||||| || |||||| ||||| |||
Sbjct 129 TCGCCTTTTCGGTTCCTATATCCAGAAGAGACGCGAGTATTATTCTTCTCAGCTCGATTC 188
Query 175 CATTGACGAGCTTCTTTGTTCTACCGCCGAGCTCTTCGGAAGCGAGAGAGAGACGGAGCA 234
||||||| |||||||| |||||| | ||||||||||| ||||| ||||||||||| ||||
Sbjct 189 CATTGACAAGCTTCTTCGTTCTAACACCGAGCTCTTCCGAAGCTAGAGAGAGACGTAGCA 248
Query 235 GAAAAGTTATCCCTCTCGAGGAATATTCCACTGGCCCTGAAGGGTTGAAATTCTATGACA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 GAAAAGTTATCCCTCTCGAGGAATATTCCACTGGCCCTGAAGGGTTGAAATTCTATGACA 308
Query 295 TTGAGGAAGGCAAAGGTCCAGTAGCCACAAAGGGATCAACTGCTCAGGTGCATTTCGATT 354
||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||
Sbjct 309 TTGAGGAAGGCAAAGGTCCAGTAGCAACAGAGGGATCAACTGCTCAGGTGCATTTTGATT 368
Query 355 GCCGTTACAGAAGCATCACTGCAATTTCTACCCGAGAATCCAAGCTTTTAGCTGGAAATC 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 369 GCCGTTACAGAAGCATCACTGCAATTTCTACCCGAGAATCCAAGCTTTTAGCTGGAAACC 428
Query 415 GTAGTATTGCTCAGCCTTACGAGTTCAAGGTGGGATCAACGCCAGGAAAGGAAAGGAAGC 474
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 429 GTAGTATTGCTCAGCCTTACGAGTTCAAGGTGGGATCTACGCCAGGAAAGGAAAGGAAGC 488
Query 475 GTGAATTCGTTGACAATCCAAACGGGTTGTTCTCTGCACAGGCTGCACCAAAACCTCCTC 534
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 489 GTGAATTCGTTGATAATCCAAATGGGTTATTCTCTGCACAGGCTGCACCAAAACCTCCTC 548
Query 535 CAGCAATGTATTACATAACTGAAGGAATGAAAGTCGGAGGCAAGAGAACGGTGATTGTTC 594
|||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CAGCAATGTATTTCATTACCGAAGGAATGAAAGTCGGAGGCAAGAGAACGGTGATTGTTC 608
Query 595 CTCCAGAAGCTGGTTATGGTCAGAAAGGAATGAATGAGATACCGCCTGGAGCTACATTTG 654
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 609 CTCCTGAAGCTGGTTATGGTCAGAAAGGAATGAATGAGATACCGCCTGGAGCTACTTTTG 668
Query 655 AGTTAAACATAGAGCTGCTTCAGGTGACTCCTCCCCCAGAAGAGTAGTGAACACTGATAA 714
||||||||||||||||||||| |||||||||||| ||||||||| ||||||| || ||||
Sbjct 669 AGTTAAACATAGAGCTGCTTCGGGTGACTCCTCCACCAGAAGAGAAGTGAACGCTAATAA 728
Query 715 GAGAAATTTGAAGCATTGTCCCAA-GTCCCAATATTTGTCTAAAGATAACAAAGGAGAAA 773
||||| |||||||| || || ||||||| |||||| ||||||| ||||||||||||
Sbjct 729 GAGAAGTTTGAAGC-TTCAAGCATTGTCCCAACATTTGTGTAAAGATGACAAAGGAGAAA 787
Query 774 AGAGAGAAAGATGTAAATTTTGGAGTACTGTATTTA-TTTGGTGTCTGGTTG-TTATACA 831
|||||||||||||||||||||||||| | | || | |||| |||||||||| |||||||
Sbjct 788 AGAGAGAAAGATGTAAATTTTGGAGT--T-T-TT-AGTTTG-TGTCTGGTTGGTTATACA 841
Query 832 CCAAACTCTGGTACACTGAAAGAACCGAGGAATATTTGCTGGACGAAAATTTGTTAAAA 890
||||||||||||||| | ||| ||||| | | |||||| ||||| ||||||||||||||
Sbjct 842 CCAAACTCTGGTACAGTTAAATAACCG-GTA-TATTTGTTGGACTAAAATTTGTTAAAA 898
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5